Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86807 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47016 * 299.99571 * 3 2 1 6 6 H 1.48494 * 109.47032 * 59.99775 * 3 2 1 7 7 C 1.39866 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00330 * 163.23121 * 7 2 1 9 9 C 1.41202 * 119.99524 * 343.22964 * 7 2 1 10 10 C 1.40794 * 120.56115 * 155.70994 * 9 7 2 11 11 N 1.31473 * 120.38571 * 180.02562 * 10 9 7 12 12 C 1.32742 * 121.74225 * 0.02562 * 11 10 9 13 13 N 1.38404 * 119.43896 * 179.72501 * 12 11 10 14 14 C 1.46503 * 119.99952 * 359.97438 * 13 12 11 15 15 H 1.08997 * 107.99932 * 321.78800 * 14 13 12 16 16 C 1.51703 * 108.12628 * 78.37751 * 14 13 12 17 17 O 1.21230 * 121.24067 * 301.73942 * 16 14 13 18 18 N 1.34999 * 117.52537 * 121.80581 * 16 14 13 19 19 C 1.33791 * 121.96892 * 359.92185 * 18 16 14 20 20 O 1.21504 * 117.61165 * 180.02562 * 19 18 16 21 21 N 1.33794 * 124.78021 * 0.06215 * 19 18 16 22 22 C 1.34991 * 121.96499 * 359.97438 * 21 19 18 23 23 S 1.59902 * 121.23801 * 180.02562 * 22 21 19 24 24 C 1.39795 * 121.12569 * 359.97438 * 12 11 10 25 25 Cl 1.73596 * 120.26331 * 179.97438 * 24 12 11 26 26 C 1.36663 * 119.47344 * 0.02562 * 24 12 11 27 27 H 0.97004 * 120.00064 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.80701 * 0.04224 * 10 9 7 29 29 H 0.96997 * 120.00594 * 179.97438 * 13 12 11 30 30 H 0.96997 * 119.01677 * 179.97438 * 18 16 14 31 31 H 0.96991 * 119.01880 * 179.97438 * 21 19 18 32 32 H 1.08001 * 120.80052 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8842 2.3965 1.2124 7 6 2.0084 -1.2112 0.0005 8 1 3.0539 -1.2312 -0.2693 9 6 1.3474 -2.4079 0.3539 10 6 1.8243 -3.6511 -0.1035 11 7 1.2059 -4.7632 0.2272 12 6 0.1225 -4.7582 0.9942 13 7 -0.4941 -5.9568 1.3082 14 6 0.0492 -7.2167 0.7947 15 1 0.3983 -7.0430 -0.2231 16 6 1.2491 -7.5938 1.6429 17 8 2.2016 -6.8515 1.7500 18 7 1.2174 -8.7873 2.2730 19 6 0.1739 -9.6177 2.1654 20 8 0.2288 -10.6719 2.7669 21 7 -0.9253 -9.3723 1.4432 22 6 -1.0786 -8.2298 0.7407 23 16 -2.4002 -7.9543 -0.1162 24 6 -0.4093 -3.5625 1.4859 25 17 -1.8277 -3.5820 2.4866 26 6 0.1956 -2.3781 1.1716 27 1 -0.4850 0.8401 -0.0004 28 1 2.7034 -3.6915 -0.7295 29 1 -1.2860 -5.9628 1.8683 30 1 1.9734 -9.0504 2.8208 31 1 -1.6331 -10.0352 1.4237 32 1 -0.1968 -1.4418 1.5402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160858047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = -16.802296 kcal Electronic energy + Delta-G solvation = -24272.077707 eV Core-core repulsion = 20384.976161 eV Total energy + Delta-G solvation = -3887.101547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.018 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44821 -40.86256 -40.18996 -38.61368 -37.32571 -36.76174 -36.01836 -35.35330 -32.38565 -31.92696 -29.79870 -27.29919 -26.57427 -25.18327 -23.83825 -23.07658 -21.23162 -20.77100 -19.90975 -19.31520 -18.79993 -18.32550 -18.17904 -17.49881 -16.85418 -16.71532 -16.23049 -16.05465 -15.80979 -15.57158 -15.03904 -14.86353 -14.49463 -13.89394 -13.63490 -13.42862 -13.27368 -13.20008 -12.88319 -12.71709 -12.47066 -12.34793 -12.15553 -11.98760 -11.67819 -11.62995 -11.31240 -10.76349 -10.31846 -10.09723 -9.99477 -9.22305 -8.82257 -8.56906 -6.23824 -1.33764 0.41696 0.43774 0.64566 0.96515 1.04498 1.38285 1.44731 1.48720 1.51070 1.58792 1.66047 1.98144 2.23482 2.37491 2.72912 3.15214 3.65866 3.74675 4.01282 4.23210 4.46517 4.75245 4.85125 4.96243 5.03580 5.16639 5.27914 5.62636 5.73642 5.76035 6.01452 6.10387 6.40609 6.47068 6.55981 6.77637 6.83977 7.61920 8.32062 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.003422 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.589590 B = 8180.264340 C = 8797.200547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.477 4.477 8 H 0.087 0.913 9 C 0.022 3.978 10 C 0.009 3.991 11 N -0.481 5.481 12 C 0.281 3.719 13 N -0.702 5.702 14 C 0.157 3.843 15 H 0.150 0.850 16 C 0.518 3.482 17 O -0.462 6.462 18 N -0.656 5.656 19 C 0.717 3.283 20 O -0.540 6.540 21 N -0.594 5.594 22 C 0.242 3.758 23 S -0.252 6.252 24 C -0.096 4.096 25 Cl -0.085 7.085 26 C -0.109 4.109 27 H 0.290 0.710 28 H 0.147 0.853 29 H 0.412 0.588 30 H 0.439 0.561 31 H 0.456 0.544 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -13.065 2.726 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.507 4.507 8 H 0.105 0.895 9 C 0.016 3.984 10 C -0.150 4.150 11 N -0.195 5.195 12 C 0.048 3.952 13 N -0.346 5.346 14 C 0.041 3.959 15 H 0.167 0.833 16 C 0.300 3.700 17 O -0.327 6.327 18 N -0.329 5.329 19 C 0.413 3.587 20 O -0.414 6.414 21 N -0.246 5.246 22 C 0.010 3.990 23 S -0.120 6.120 24 C -0.128 4.128 25 Cl -0.057 7.057 26 C -0.136 4.136 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.251 0.749 30 H 0.283 0.717 31 H 0.304 0.696 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.864 -13.653 2.198 14.122 hybrid contribution 0.546 1.161 1.361 1.870 sum -2.318 -12.492 3.559 13.194 Atomic orbital electron populations 1.69839 1.08857 1.30756 1.35438 1.26688 0.95444 1.04404 0.91325 0.85159 0.79571 0.76369 0.78698 1.17990 1.19309 1.19328 1.19666 0.98225 0.91454 1.41342 0.89510 1.18614 0.92927 0.94739 0.92088 1.22518 1.02110 0.86865 1.03511 1.66679 1.06980 1.31817 1.14018 1.17277 0.93547 0.84000 1.00373 1.43336 1.32825 0.99368 1.59108 1.20841 0.88250 0.85009 1.01792 0.83315 1.21846 0.88910 0.80066 0.79194 1.90902 1.34307 1.49445 1.58084 1.44436 1.21033 1.18311 1.49103 1.15599 0.80287 0.83392 0.79431 1.91113 1.79918 1.23900 1.46448 1.43909 1.19524 1.19254 1.41937 1.24817 0.99672 0.86978 0.87550 1.91136 1.11661 1.79473 1.29706 1.20885 0.93562 0.94601 1.03798 1.98251 1.39991 1.98636 1.68789 1.21214 0.97987 0.95783 0.98623 0.89939 0.83613 0.74857 0.71662 0.69588 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.22 10.91 21.82 0.24 -39.98 16 2 C 0.04 1.72 5.18 85.23 0.44 2.16 16 3 Si 0.98 35.86 29.59 68.60 2.03 37.89 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.48 -23.56 9.07 23.39 0.21 -23.35 16 8 H 0.09 4.09 7.90 -2.91 -0.02 4.07 16 9 C 0.02 1.09 5.59 -21.18 -0.12 0.97 16 10 C 0.01 0.43 10.97 85.37 0.94 1.37 16 11 N -0.48 -20.82 7.95 -191.08 -1.52 -22.34 16 12 C 0.28 11.46 7.08 133.33 0.94 12.40 16 13 N -0.70 -22.19 4.88 -328.29 -1.60 -23.79 16 14 C 0.16 4.07 2.70 44.14 0.12 4.19 16 15 H 0.15 4.20 7.54 -2.39 -0.02 4.18 16 16 C 0.52 13.57 7.67 87.94 0.67 14.25 16 17 O -0.46 -16.05 16.36 -2.88 -0.05 -16.09 16 18 N -0.66 -12.56 5.14 -441.29 -2.27 -14.83 16 19 C 0.72 12.91 8.48 179.67 1.52 14.43 16 20 O -0.54 -11.79 17.83 -3.73 -0.07 -11.85 16 21 N -0.59 -8.89 5.13 -321.49 -1.65 -10.54 16 22 C 0.24 4.75 6.33 87.94 0.56 5.30 16 23 S -0.25 -5.57 29.93 -56.49 -1.69 -7.27 16 24 C -0.10 -4.18 6.32 22.28 0.14 -4.04 16 25 Cl -0.08 -3.07 27.56 -2.72 -0.07 -3.14 16 26 C -0.11 -5.33 8.52 22.65 0.19 -5.14 16 27 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 28 H 0.15 6.26 8.06 -2.91 -0.02 6.24 16 29 H 0.41 12.10 7.15 -92.71 -0.66 11.43 16 30 H 0.44 7.07 8.80 -92.71 -0.82 6.26 16 31 H 0.46 4.72 8.62 -92.72 -0.80 3.92 16 32 H 0.13 6.47 6.20 -2.91 -0.02 6.46 16 Total: -1.00 -58.83 317.08 -2.04 -60.87 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -1.01 Total: 28.53 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 5.62 Total: 22.55 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -6.80 Total: -111.48 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.11 Total: -27.95 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.69 Total: -7.27 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.07 Total: -3.14 kcal Total: -58.83 -2.04 -60.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160858047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.067 kcal (2) G-P(sol) polarization free energy of solvation -58.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds