Wall clock time and date at job start Sat Apr 11 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46946 * 299.99933 * 3 2 1 6 6 H 1.48501 * 109.46966 * 60.00051 * 3 2 1 7 7 C 1.39930 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 191.87296 * 7 2 1 9 9 C 1.41415 * 119.99624 * 11.87573 * 7 2 1 10 10 C 1.40782 * 120.20336 * 208.70583 * 9 7 2 11 11 C 1.37642 * 119.89378 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32473 * 359.74710 * 11 10 9 13 13 C 1.39297 * 120.42002 * 0.51170 * 12 11 10 14 14 N 1.39685 * 119.94800 * 179.76527 * 13 12 11 15 15 S 1.65600 * 120.00076 * 313.80276 * 14 13 12 16 16 O 1.42094 * 106.40410 * 184.41163 * 15 14 13 17 17 O 1.42105 * 106.40089 * 51.49569 * 15 14 13 18 18 C 1.76205 * 107.22014 * 297.95413 * 15 14 13 19 19 N 1.31856 * 119.60621 * 331.27130 * 18 15 14 20 20 C 1.31835 * 121.77271 * 180.02562 * 19 18 15 21 21 C 1.38476 * 120.78046 * 359.97438 * 20 19 18 22 22 F 1.35106 * 120.42663 * 180.02562 * 21 20 19 23 23 C 1.38794 * 119.14120 * 0.02562 * 21 20 19 24 24 C 1.38441 * 119.60644 * 151.26794 * 18 15 14 25 25 F 1.35096 * 120.42898 * 0.02562 * 24 18 15 26 26 C 1.38308 * 120.09612 * 359.48875 * 13 12 11 27 27 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.05466 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.83965 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.78662 * 180.27439 * 12 11 10 31 31 H 0.96993 * 120.00117 * 133.81007 * 14 13 12 32 32 H 1.08001 * 119.60797 * 180.27557 * 20 19 18 33 33 H 1.07998 * 120.81158 * 179.97438 * 23 21 20 34 34 H 1.08004 * 120.16135 * 180.23077 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0707 -1.2218 0.1930 9 6 1.3236 -2.4235 -0.2510 10 6 1.7910 -3.6295 0.3050 11 6 1.1202 -4.8052 0.0557 12 6 -0.0165 -4.8075 -0.7360 13 6 -0.4876 -3.6229 -1.2972 14 7 -1.6320 -3.6374 -2.0980 15 16 -1.8041 -4.7890 -3.2756 16 8 -3.0026 -4.4753 -3.9715 17 8 -1.5758 -6.0428 -2.6470 18 6 -0.4876 -4.5612 -4.4243 19 7 0.0267 -3.3592 -4.5958 20 6 1.0119 -3.1403 -5.4440 21 6 1.5466 -4.1759 -6.1917 22 9 2.5566 -3.9435 -7.0586 23 6 1.0316 -5.4557 -6.0391 24 6 -0.0055 -5.6464 -5.1361 25 9 -0.5382 -6.8746 -4.9551 26 6 0.1729 -2.4314 -1.0581 27 1 -0.4850 0.8400 -0.0004 28 1 2.6749 -3.6322 0.9256 29 1 1.4793 -5.7298 0.4830 30 1 -0.5386 -5.7344 -0.9224 31 1 -2.3259 -2.9729 -1.9645 32 1 1.4099 -2.1422 -5.5535 33 1 1.4280 -6.2831 -6.6089 34 1 -0.1936 -1.5117 -1.4896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190182807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:21 Heat of formation + Delta-G solvation = -116.320167 kcal Electronic energy + Delta-G solvation = -27130.042380 eV Core-core repulsion = 22790.369077 eV Total energy + Delta-G solvation = -4339.673302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.67932 -50.46089 -41.27029 -39.78241 -38.49222 -37.27160 -36.30532 -34.96428 -33.82195 -32.33837 -31.41715 -29.67762 -27.14540 -25.98385 -25.20689 -22.99918 -22.67626 -21.10376 -19.91688 -19.74838 -19.48383 -18.89345 -18.70804 -17.69933 -17.66019 -17.34023 -16.85459 -16.74845 -16.45869 -16.40223 -16.15085 -15.73272 -15.29946 -14.73803 -14.71462 -14.63097 -14.27826 -14.17645 -13.88627 -13.54676 -13.49597 -13.32818 -12.94666 -12.85475 -12.80664 -12.65247 -12.09604 -11.69418 -11.63874 -11.29392 -11.26478 -11.08929 -10.98651 -10.62852 -9.28394 -9.00959 -8.53297 -6.33532 -1.12910 -0.95149 -0.50929 0.92133 1.11029 1.43877 1.47234 1.52845 1.57145 1.79305 2.16430 2.23116 2.25464 2.52332 2.76338 2.94311 3.21697 3.41808 3.49128 3.69256 3.85369 3.99681 4.29667 4.44705 4.59827 4.83074 4.98960 5.02925 5.19130 5.24313 5.42241 5.54984 5.90807 6.01941 6.03664 6.13481 6.19333 6.40773 6.71891 6.98375 7.02403 8.40535 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.011650 B = 0.004690 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.762787 B = 5968.918748 C = 7027.967445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.237 4.237 11 C -0.081 4.081 12 C -0.271 4.271 13 C 0.150 3.850 14 N -1.029 6.029 15 S 2.716 3.284 16 O -0.966 6.966 17 O -0.948 6.948 18 C -0.499 4.499 19 N -0.358 5.358 20 C 0.052 3.948 21 C 0.148 3.852 22 F -0.099 7.099 23 C -0.147 4.147 24 C 0.156 3.844 25 F -0.104 7.104 26 C -0.163 4.163 27 H 0.287 0.713 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.430 0.570 32 H 0.212 0.788 33 H 0.211 0.789 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -5.098 -12.420 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.258 4.258 11 C -0.100 4.100 12 C -0.293 4.293 13 C 0.055 3.945 14 N -0.783 5.783 15 S 2.803 3.197 16 O -0.956 6.956 17 O -0.937 6.937 18 C -0.718 4.718 19 N -0.066 5.066 20 C -0.112 4.112 21 C 0.126 3.874 22 F -0.077 7.077 23 C -0.174 4.174 24 C 0.133 3.867 25 F -0.083 7.083 26 C -0.186 4.186 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.269 0.731 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.998 -5.094 -12.075 13.143 hybrid contribution 0.923 0.531 -0.558 1.202 sum 1.921 -4.564 -12.633 13.569 Atomic orbital electron populations 1.69833 1.08681 1.30308 1.36571 1.26638 0.95539 1.04105 0.91435 0.85202 0.79390 0.76631 0.78751 1.18282 1.18958 1.19559 1.19789 0.96387 0.91449 1.44609 0.90554 1.17850 0.91771 0.93130 0.88747 1.21313 1.04077 0.93504 1.06870 1.20742 0.94681 0.97421 0.97147 1.21261 1.02894 0.97280 1.07876 1.17220 0.87269 0.94893 0.95105 1.52504 1.28002 1.50971 1.46799 1.01676 0.72485 0.73112 0.72455 1.93580 1.43452 1.84711 1.73882 1.93594 1.85620 1.40754 1.73750 1.33614 1.23209 0.95015 1.19945 1.67888 1.07567 1.18457 1.12727 1.23844 0.93361 1.01900 0.92095 1.18597 0.86182 0.93656 0.88990 1.91646 1.55604 1.94849 1.65616 1.22012 0.96103 0.99496 0.99783 1.17996 0.93538 0.79938 0.95276 1.91671 1.84212 1.38834 1.93535 1.21227 0.98701 0.96021 1.02664 0.90234 0.87903 0.85754 0.85122 0.73133 0.77098 0.77232 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.98 10.90 21.82 0.24 -40.75 16 2 C 0.04 1.78 5.23 85.25 0.45 2.22 16 3 Si 0.98 36.43 29.58 68.60 2.03 38.46 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.49 -25.07 9.06 23.46 0.21 -24.86 16 8 H 0.08 3.76 7.87 -2.91 -0.02 3.74 16 9 C 0.09 4.50 5.54 -21.31 -0.12 4.38 16 10 C -0.24 -11.13 9.79 22.75 0.22 -10.91 16 11 C -0.08 -3.49 10.02 22.20 0.22 -3.26 16 12 C -0.27 -11.85 9.23 22.59 0.21 -11.64 16 13 C 0.15 6.58 6.13 38.16 0.23 6.82 16 14 N -1.03 -38.61 5.69 -51.49 -0.29 -38.90 16 15 S 2.72 96.37 5.44 -56.49 -0.31 96.06 16 16 O -0.97 -36.08 18.02 -128.00 -2.31 -38.39 16 17 O -0.95 -36.23 13.92 -128.00 -1.78 -38.01 16 18 C -0.50 -16.07 6.64 84.74 0.56 -15.51 16 19 N -0.36 -11.20 10.22 -192.94 -1.97 -13.17 16 20 C 0.05 1.24 11.17 84.75 0.95 2.19 16 21 C 0.15 2.90 7.34 22.46 0.16 3.07 16 22 F -0.10 -1.67 17.28 44.97 0.78 -0.89 16 23 C -0.15 -2.83 10.15 22.55 0.23 -2.61 16 24 C 0.16 4.22 7.22 22.46 0.16 4.39 16 25 F -0.10 -2.89 15.85 44.97 0.71 -2.17 16 26 C -0.16 -7.96 8.57 22.85 0.20 -7.76 16 27 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 28 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.13 5.50 5.67 -2.91 -0.02 5.49 16 31 H 0.43 14.52 8.95 -96.76 -0.87 13.65 16 32 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.12 5.86 6.26 -2.91 -0.02 5.84 16 Total: -1.00 -63.18 323.59 1.12 -62.06 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.33 Total: 29.17 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 3.69 Total: -53.47 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.03 Total: -92.81 kcal Atomic # 8 Polarization: -72.31 SS G_CDS: -4.09 Total: -76.40 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 1.49 Total: -3.06 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 16 Polarization: 96.37 SS G_CDS: -0.31 Total: 96.06 kcal Total: -63.18 1.12 -62.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190182807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.262 kcal (2) G-P(sol) polarization free energy of solvation -63.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds