Wall clock time and date at job start Sat Apr 11 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43204 * 119.99625 * 206.00827 * 3 2 1 5 5 N 3.51033 * 140.69241 * 206.01104 * 2 1 3 6 6 C 1.41148 * 120.00341 * 26.01247 * 3 2 1 7 7 C 1.38991 * 119.99669 * 353.36034 * 6 3 2 8 8 H 1.08006 * 119.99702 * 123.03621 * 7 6 3 9 9 C 1.40822 * 120.00171 * 303.03218 * 7 6 3 10 10 N 1.30340 * 119.99886 * 173.52205 * 9 7 6 11 11 Si 1.86795 * 119.99905 * 353.52524 * 9 7 6 12 12 H 1.48499 * 109.47318 * 89.99475 * 11 9 7 13 13 H 1.48500 * 109.46920 * 209.99561 * 11 9 7 14 14 H 1.48502 * 109.47143 * 329.99098 * 11 9 7 15 15 N 1.38227 * 120.00095 * 173.36080 * 6 3 2 16 16 S 1.65603 * 119.99828 * 177.84087 * 15 6 3 17 17 O 1.42098 * 106.39894 * 177.51679 * 16 15 6 18 18 O 1.42092 * 106.40406 * 310.43864 * 16 15 6 19 19 C 1.76204 * 107.21730 * 63.97881 * 16 15 6 20 20 N 1.31855 * 119.60697 * 261.88504 * 19 16 15 21 21 C 1.31829 * 121.77523 * 179.75497 * 20 19 16 22 22 C 1.38476 * 120.77985 * 0.51923 * 21 20 19 23 23 F 1.35102 * 120.43283 * 179.76338 * 22 21 20 24 24 C 1.38802 * 119.13823 * 359.74863 * 22 21 20 25 25 C 1.38429 * 119.60602 * 82.15673 * 19 16 15 26 26 F 1.35098 * 120.43240 * 359.97438 * 25 19 16 27 27 H 0.96998 * 119.99716 * 180.02562 * 10 9 7 28 28 H 0.96996 * 119.99622 * 357.56793 * 15 6 3 29 29 H 1.08002 * 119.61493 * 180.24736 * 21 20 19 30 30 H 1.07996 * 120.80692 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2835 1.1156 0.5438 5 7 3.8522 1.9985 0.9752 6 6 3.2744 -1.0976 -0.5361 7 6 2.5869 -2.2370 -0.9371 8 1 2.6814 -2.5957 -1.9515 9 6 1.7673 -2.9239 -0.0209 10 7 1.0252 -3.9157 -0.4266 11 14 1.7435 -2.4137 1.7758 12 1 0.6915 -1.3867 1.9849 13 1 1.4541 -3.5984 2.6230 14 1 3.0662 -1.8504 2.1480 15 7 4.6497 -1.0398 -0.6622 16 16 5.4837 -2.3481 -1.2412 17 8 6.8485 -1.9576 -1.3051 18 8 5.0309 -3.4727 -0.5000 19 6 4.9614 -2.6053 -2.9042 20 7 4.0431 -3.5148 -3.1654 21 6 3.6177 -3.7392 -4.3928 22 6 4.1334 -3.0274 -5.4628 23 9 3.6956 -3.2665 -6.7184 24 6 5.1056 -2.0649 -5.2286 25 6 5.5240 -1.8540 -3.9217 26 9 6.4679 -0.9275 -3.6466 27 1 0.4604 -4.3885 0.2044 28 1 5.1257 -0.2316 -0.4153 29 1 2.8611 -4.4901 -4.5664 30 1 5.5260 -1.4938 -6.0431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190207741.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:28 Heat of formation + Delta-G solvation = -40.062295 kcal Electronic energy + Delta-G solvation = -27136.247431 eV Core-core repulsion = 22696.340575 eV Total energy + Delta-G solvation = -4439.906856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.54211 -49.51453 -40.18857 -37.90713 -36.93893 -35.61777 -35.27616 -35.10859 -33.58767 -32.74900 -31.21504 -30.33628 -27.24873 -24.86306 -24.05797 -22.06361 -20.15506 -19.13745 -18.63421 -18.56069 -18.30787 -17.79028 -17.24121 -16.64769 -16.33882 -16.13663 -15.76733 -15.30829 -15.14504 -14.99247 -14.49396 -13.87449 -13.65858 -13.50174 -13.14596 -13.08897 -12.93905 -12.66819 -12.29486 -12.15385 -12.05562 -11.92684 -11.80365 -11.65519 -11.41872 -11.35764 -11.27189 -10.79163 -10.75277 -10.39260 -10.16774 -9.86565 -9.53388 -9.47593 -7.55927 -7.33432 -5.51958 -0.05679 0.40881 0.54370 1.93379 2.74837 2.99997 3.07409 3.11310 3.17074 3.25711 3.45735 3.51943 3.72953 3.78209 3.81282 3.86110 4.00894 4.21847 4.28387 4.51765 4.75453 4.80405 4.96474 5.07037 5.12404 5.42225 5.49322 5.84269 6.03880 6.56919 6.74680 7.16911 7.24764 7.45862 7.70576 8.05171 8.50081 8.83567 9.59907 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.005813 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.126337 B = 4815.495861 C = 5411.767941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.315 3.685 3 C -0.264 4.264 4 C 0.297 3.703 5 N -0.502 5.502 6 C 0.386 3.614 7 C -0.463 4.463 8 H 0.138 0.862 9 C 0.123 3.877 10 N -0.744 5.744 11 Si 0.881 3.119 12 H -0.244 1.244 13 H -0.273 1.273 14 H -0.239 1.239 15 N -1.035 6.035 16 S 2.690 3.310 17 O -0.947 6.947 18 O -0.890 6.890 19 C -0.484 4.484 20 N -0.298 5.298 21 C 0.052 3.948 22 C 0.133 3.867 23 F -0.114 7.114 24 C -0.170 4.170 25 C 0.165 3.835 26 F -0.099 7.099 27 H 0.301 0.699 28 H 0.417 0.583 29 H 0.189 0.811 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -3.374 -9.588 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C 0.004 3.996 3 C -0.284 4.284 4 C -0.012 4.012 5 N -0.183 5.183 6 C 0.278 3.722 7 C -0.497 4.497 8 H 0.155 0.845 9 C -0.108 4.108 10 N -0.364 5.364 11 Si 0.702 3.298 12 H -0.168 1.168 13 H -0.198 1.198 14 H -0.161 1.161 15 N -0.778 5.778 16 S 2.776 3.224 17 O -0.937 6.937 18 O -0.880 6.880 19 C -0.701 4.701 20 N -0.006 5.006 21 C -0.112 4.112 22 C 0.110 3.890 23 F -0.092 7.092 24 C -0.198 4.198 25 C 0.141 3.859 26 F -0.077 7.077 27 H 0.112 0.888 28 H 0.252 0.748 29 H 0.206 0.794 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.197 -3.342 -7.925 10.601 hybrid contribution 0.342 0.945 -1.185 1.554 sum 6.539 -2.397 -9.111 11.468 Atomic orbital electron populations 1.81080 1.11800 1.09620 1.14424 1.24243 0.91115 0.92564 0.91676 1.12924 0.83865 0.95320 1.36245 1.25242 0.93015 0.92017 0.90968 1.81109 1.09428 1.11677 1.16044 1.17103 0.79865 0.91144 0.84101 1.19551 1.22356 1.05841 1.01919 0.84494 1.25762 0.90546 0.92821 1.01634 1.69237 1.14150 1.13727 1.39262 0.86637 0.82965 0.79979 0.80191 1.16752 1.19797 1.16132 1.54729 1.15960 1.34193 1.72923 1.02927 0.72487 0.73969 0.73049 1.93654 1.30344 1.83203 1.86494 1.93654 1.80574 1.47931 1.65825 1.34171 1.07152 1.04110 1.24671 1.68034 1.03019 1.09314 1.20237 1.23503 1.00850 1.00404 0.86452 1.18839 0.93834 0.95257 0.81042 1.91595 1.87553 1.92833 1.37202 1.21662 0.99872 1.00946 0.97312 1.18049 0.87158 0.87382 0.93282 1.91694 1.60320 1.61647 1.94018 0.88768 0.74755 0.79412 0.81388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.52 18.10 41.84 0.76 -10.77 16 2 C 0.31 7.06 10.88 -22.47 -0.24 6.82 16 3 C -0.26 -5.47 4.36 -104.94 -0.46 -5.93 16 4 C 0.30 6.05 14.11 -22.49 -0.32 5.73 16 5 N -0.50 -10.46 18.53 41.81 0.77 -9.69 16 6 C 0.39 7.71 5.22 -83.60 -0.44 7.28 16 7 C -0.46 -9.92 6.35 -38.33 -0.24 -10.17 16 8 H 0.14 2.85 4.77 -52.48 -0.25 2.60 16 9 C 0.12 2.77 5.03 -17.21 -0.09 2.68 16 10 N -0.74 -16.83 13.90 55.59 0.77 -16.06 16 11 Si 0.88 18.86 24.63 -169.99 -4.19 14.67 16 12 H -0.24 -5.39 5.99 56.52 0.34 -5.05 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 14 H -0.24 -4.99 7.10 56.52 0.40 -4.59 16 15 N -1.04 -18.03 5.74 32.59 0.19 -17.85 16 16 S 2.69 46.72 5.23 -107.50 -0.56 46.16 16 17 O -0.95 -16.58 16.51 -57.17 -0.94 -17.53 16 18 O -0.89 -17.85 16.33 -57.17 -0.93 -18.78 16 19 C -0.48 -7.59 6.01 -17.47 -0.11 -7.69 16 20 N -0.30 -4.74 7.61 -12.34 -0.09 -4.83 16 21 C 0.05 0.64 11.17 -17.47 -0.20 0.44 16 22 C 0.13 1.43 7.34 -39.29 -0.29 1.14 16 23 F -0.11 -1.12 17.28 2.25 0.04 -1.08 16 24 C -0.17 -1.80 10.15 -39.15 -0.40 -2.20 16 25 C 0.16 2.19 7.22 -39.29 -0.28 1.91 16 26 F -0.10 -1.34 15.61 2.25 0.04 -1.30 16 27 H 0.30 6.26 8.29 -40.82 -0.34 5.92 16 28 H 0.42 6.42 7.69 -34.48 -0.27 6.16 16 29 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -27.18 304.38 -3.18 -30.36 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -0.56 Total: 2.08 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.06 Total: 0.02 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 2.40 Total: -59.19 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.88 Total: -36.31 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.38 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.19 Total: 14.67 kcal Atomic # 16 Polarization: 46.72 SS G_CDS: -0.56 Total: 46.16 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.18 -3.18 -30.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190207741.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.700 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds