Wall clock time and date at job start Sat Apr 11 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43204 * 119.99625 * 206.00827 * 3 2 1 5 5 N 3.51033 * 140.69241 * 206.01104 * 2 1 3 6 6 C 1.41148 * 120.00341 * 26.01247 * 3 2 1 7 7 C 1.38991 * 119.99669 * 353.36034 * 6 3 2 8 8 H 1.08006 * 119.99702 * 123.03621 * 7 6 3 9 9 C 1.40822 * 120.00171 * 303.03218 * 7 6 3 10 10 N 1.30340 * 119.99886 * 173.52205 * 9 7 6 11 11 Si 1.86795 * 119.99905 * 353.52524 * 9 7 6 12 12 H 1.48499 * 109.47318 * 89.99475 * 11 9 7 13 13 H 1.48500 * 109.46920 * 209.99561 * 11 9 7 14 14 H 1.48502 * 109.47143 * 329.99098 * 11 9 7 15 15 N 1.38227 * 120.00095 * 173.36080 * 6 3 2 16 16 S 1.65603 * 119.99828 * 177.84087 * 15 6 3 17 17 O 1.42098 * 106.39894 * 177.51679 * 16 15 6 18 18 O 1.42092 * 106.40406 * 310.43864 * 16 15 6 19 19 C 1.76204 * 107.21730 * 63.97881 * 16 15 6 20 20 N 1.31855 * 119.60697 * 261.88504 * 19 16 15 21 21 C 1.31829 * 121.77523 * 179.75497 * 20 19 16 22 22 C 1.38476 * 120.77985 * 0.51923 * 21 20 19 23 23 F 1.35102 * 120.43283 * 179.76338 * 22 21 20 24 24 C 1.38802 * 119.13823 * 359.74863 * 22 21 20 25 25 C 1.38429 * 119.60602 * 82.15673 * 19 16 15 26 26 F 1.35098 * 120.43240 * 359.97438 * 25 19 16 27 27 H 0.96998 * 119.99716 * 180.02562 * 10 9 7 28 28 H 0.96996 * 119.99622 * 357.56793 * 15 6 3 29 29 H 1.08002 * 119.61493 * 180.24736 * 21 20 19 30 30 H 1.07996 * 120.80692 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2835 1.1156 0.5438 5 7 3.8522 1.9985 0.9752 6 6 3.2744 -1.0976 -0.5361 7 6 2.5869 -2.2370 -0.9371 8 1 2.6814 -2.5957 -1.9515 9 6 1.7673 -2.9239 -0.0209 10 7 1.0252 -3.9157 -0.4266 11 14 1.7435 -2.4137 1.7758 12 1 0.6915 -1.3867 1.9849 13 1 1.4541 -3.5984 2.6230 14 1 3.0662 -1.8504 2.1480 15 7 4.6497 -1.0398 -0.6622 16 16 5.4837 -2.3481 -1.2412 17 8 6.8485 -1.9576 -1.3051 18 8 5.0309 -3.4727 -0.5000 19 6 4.9614 -2.6053 -2.9042 20 7 4.0431 -3.5148 -3.1654 21 6 3.6177 -3.7392 -4.3928 22 6 4.1334 -3.0274 -5.4628 23 9 3.6956 -3.2665 -6.7184 24 6 5.1056 -2.0649 -5.2286 25 6 5.5240 -1.8540 -3.9217 26 9 6.4679 -0.9275 -3.6466 27 1 0.4604 -4.3885 0.2044 28 1 5.1257 -0.2316 -0.4153 29 1 2.8611 -4.4901 -4.5664 30 1 5.5260 -1.4938 -6.0431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190207741.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:27 Heat of formation + Delta-G solvation = -59.676225 kcal Electronic energy + Delta-G solvation = -27137.097955 eV Core-core repulsion = 22696.340575 eV Total energy + Delta-G solvation = -4440.757380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.55696 -50.38263 -41.21238 -39.50424 -38.38029 -37.07990 -36.91606 -36.86089 -35.24387 -33.72891 -32.24175 -31.95529 -28.91263 -25.87947 -25.06211 -23.67641 -21.63954 -20.60170 -19.94558 -19.62808 -19.45938 -19.12927 -18.79153 -17.80577 -17.51586 -17.22145 -16.96065 -16.69303 -16.35328 -16.09991 -15.56501 -15.30689 -15.14154 -14.64934 -14.63731 -14.54578 -14.30422 -14.07748 -13.95995 -13.77062 -13.66063 -13.52137 -13.26858 -13.14428 -13.03003 -12.94724 -12.67021 -12.48412 -12.37597 -11.98057 -11.21065 -11.15099 -10.95938 -10.54744 -9.20734 -9.02124 -7.19981 -1.16673 -0.85886 -0.38935 0.29483 1.28472 1.35968 1.41397 1.55723 1.76669 1.94109 2.02082 2.10353 2.26370 2.28914 2.44374 2.50692 2.59136 2.83536 3.08881 3.31711 3.38563 3.58271 3.65971 3.96704 3.99356 4.10733 4.16627 4.56253 4.97750 5.13304 5.13763 5.63336 5.90679 6.08519 6.20665 6.38686 6.83329 7.08117 7.94120 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.005813 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.126337 B = 4815.495861 C = 5411.767941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.320 3.680 3 C -0.268 4.268 4 C 0.306 3.694 5 N -0.506 5.506 6 C 0.403 3.597 7 C -0.481 4.481 8 H 0.144 0.856 9 C 0.107 3.893 10 N -0.765 5.765 11 Si 0.886 3.114 12 H -0.255 1.255 13 H -0.261 1.261 14 H -0.234 1.234 15 N -1.031 6.031 16 S 2.703 3.297 17 O -0.952 6.952 18 O -0.922 6.922 19 C -0.504 4.504 20 N -0.335 5.335 21 C 0.050 3.950 22 C 0.153 3.847 23 F -0.101 7.101 24 C -0.153 4.153 25 C 0.162 3.838 26 F -0.101 7.101 27 H 0.306 0.694 28 H 0.427 0.573 29 H 0.209 0.791 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 -3.102 -11.424 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C 0.010 3.990 3 C -0.288 4.288 4 C -0.004 4.004 5 N -0.187 5.187 6 C 0.293 3.707 7 C -0.514 4.514 8 H 0.161 0.839 9 C -0.122 4.122 10 N -0.386 5.386 11 Si 0.707 3.293 12 H -0.180 1.180 13 H -0.186 1.186 14 H -0.157 1.157 15 N -0.774 5.774 16 S 2.791 3.209 17 O -0.941 6.941 18 O -0.912 6.912 19 C -0.722 4.722 20 N -0.043 5.043 21 C -0.114 4.114 22 C 0.130 3.870 23 F -0.079 7.079 24 C -0.180 4.180 25 C 0.138 3.862 26 F -0.079 7.079 27 H 0.118 0.882 28 H 0.264 0.736 29 H 0.226 0.774 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.066 -3.052 -9.700 12.383 hybrid contribution 0.140 0.841 -0.791 1.163 sum 7.206 -2.211 -10.491 12.918 Atomic orbital electron populations 1.81069 1.12535 1.10417 1.15456 1.24469 0.91436 0.91937 0.91120 1.12934 0.83260 0.95808 1.36807 1.25071 0.92804 0.91747 0.90729 1.81120 1.09652 1.11729 1.16212 1.16964 0.80490 0.90409 0.82838 1.19665 1.22913 1.06414 1.02384 0.83934 1.26030 0.90634 0.93040 1.02485 1.69231 1.15052 1.14497 1.39799 0.86563 0.82732 0.80095 0.79945 1.17978 1.18591 1.15653 1.54438 1.15050 1.34638 1.73269 1.02146 0.72070 0.73114 0.73525 1.93644 1.30414 1.83100 1.86983 1.93618 1.81023 1.48816 1.67729 1.33441 1.09022 1.06068 1.23701 1.67934 1.04018 1.10198 1.22191 1.23867 1.00859 1.00785 0.85924 1.18696 0.92994 0.94348 0.80971 1.91639 1.87290 1.92616 1.36387 1.21990 0.98730 1.00282 0.96994 1.18092 0.87104 0.87087 0.93884 1.91692 1.60397 1.61662 1.94142 0.88223 0.73564 0.77408 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.15 18.10 19.01 0.34 -23.81 16 2 C 0.32 14.26 10.88 88.33 0.96 15.22 16 3 C -0.27 -10.92 4.36 -20.07 -0.09 -11.01 16 4 C 0.31 12.10 14.11 88.34 1.25 13.35 16 5 N -0.51 -20.41 18.53 19.00 0.35 -20.06 16 6 C 0.40 15.82 5.22 39.03 0.20 16.03 16 7 C -0.48 -20.45 6.35 23.08 0.15 -20.30 16 8 H 0.14 5.89 4.77 -2.91 -0.01 5.88 16 9 C 0.11 4.80 5.03 85.55 0.43 5.23 16 10 N -0.76 -34.66 13.90 21.98 0.31 -34.35 16 11 Si 0.89 37.62 24.63 68.60 1.69 39.31 16 12 H -0.26 -11.31 5.99 99.48 0.60 -10.71 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 14 H -0.23 -9.65 7.10 99.48 0.71 -8.95 16 15 N -1.03 -35.09 5.74 -50.80 -0.29 -35.38 16 16 S 2.70 92.34 5.23 -56.49 -0.30 92.05 16 17 O -0.95 -32.49 16.51 -128.00 -2.11 -34.61 16 18 O -0.92 -37.11 16.33 -128.00 -2.09 -39.20 16 19 C -0.50 -15.15 6.01 84.73 0.51 -14.64 16 20 N -0.33 -10.26 7.61 -192.96 -1.47 -11.73 16 21 C 0.05 1.14 11.17 84.75 0.95 2.09 16 22 C 0.15 2.76 7.34 22.46 0.16 2.93 16 23 F -0.10 -1.60 17.28 44.97 0.78 -0.82 16 24 C -0.15 -2.66 10.15 22.55 0.23 -2.43 16 25 C 0.16 3.94 7.22 22.46 0.16 4.10 16 26 F -0.10 -2.50 15.61 44.97 0.70 -1.80 16 27 H 0.31 12.80 8.29 -92.71 -0.77 12.03 16 28 H 0.43 12.70 7.69 -96.74 -0.74 11.96 16 29 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -57.15 304.38 3.26 -53.89 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.44 Total: 5.94 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 4.91 Total: 10.57 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -0.76 Total: -125.33 kcal Atomic # 8 Polarization: -69.60 SS G_CDS: -4.20 Total: -73.80 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 1.48 Total: -2.62 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.69 Total: 39.31 kcal Atomic # 16 Polarization: 92.34 SS G_CDS: -0.30 Total: 92.05 kcal Total: -57.15 3.26 -53.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190207741.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.782 kcal (2) G-P(sol) polarization free energy of solvation -57.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds