Wall clock time and date at job start Sat Apr 11 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47426 * 270.00482 * 3 2 1 5 5 H 1.48503 * 109.47048 * 30.00762 * 3 2 1 6 6 H 1.48503 * 109.47030 * 150.00410 * 3 2 1 7 7 C 1.37882 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99897 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00177 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40216 * 66.46307 * 9 7 2 11 11 O 1.42098 * 106.40384 * 293.54255 * 9 7 2 12 12 N 1.65595 * 107.21806 * 180.02562 * 9 7 2 13 13 C 1.46500 * 119.99999 * 65.00563 * 12 9 7 14 14 C 1.50704 * 109.47398 * 165.00049 * 13 12 9 15 15 C 1.38830 * 120.34988 * 269.97389 * 14 13 12 16 16 C 1.38381 * 118.48403 * 180.02562 * 15 14 13 17 17 C 1.38925 * 119.10900 * 0.02562 * 16 15 14 18 18 O 1.35677 * 119.68043 * 180.02562 * 17 16 15 19 19 C 1.42901 * 116.99404 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46863 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.46949 * 59.99695 * 20 19 18 22 22 F 1.39898 * 109.47033 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46979 * 300.00261 * 20 19 18 24 24 N 1.32247 * 120.62932 * 0.02562 * 17 16 15 25 25 C 1.31964 * 121.65048 * 359.97438 * 24 17 16 26 26 H 0.97001 * 120.00066 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00270 * 244.99746 * 12 9 7 28 28 H 1.08997 * 109.47439 * 44.99701 * 13 12 9 29 29 H 1.09006 * 109.46623 * 284.99550 * 13 12 9 30 30 H 1.08005 * 120.75911 * 0.04359 * 15 14 13 31 31 H 1.08001 * 120.44529 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47131 * 300.00061 * 19 18 17 33 33 H 1.08997 * 109.47268 * 60.00924 * 19 18 17 34 34 H 1.08004 * 119.58141 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7951 -1.2500 11 8 0.4518 -2.7956 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1392 -4.1089 1.1494 14 6 3.7946 -5.4641 1.0772 15 6 3.1958 -6.5655 1.6735 16 6 3.8316 -7.7914 1.5840 17 6 5.0405 -7.8778 0.9050 18 8 5.6736 -9.0740 0.8097 19 6 6.9127 -9.0973 0.0983 20 6 7.4727 -10.5211 0.0960 21 9 6.5609 -11.3798 -0.5272 22 9 8.6861 -10.5438 -0.5999 23 9 7.6834 -10.9415 1.4137 24 7 5.5801 -6.8051 0.3506 25 6 4.9977 -5.6230 0.4193 26 1 -0.4850 0.8400 0.0004 27 1 2.3171 -4.5325 -0.7618 28 1 2.5621 -4.0331 2.0709 29 1 3.9053 -3.3336 1.1356 30 1 2.2551 -6.4680 2.1951 31 1 3.3938 -8.6692 2.0359 32 1 6.7484 -8.7702 -0.9284 33 1 7.6230 -8.4280 0.5837 34 1 5.4678 -4.7692 -0.0460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:33 Heat of formation + Delta-G solvation = -246.743427 kcal Electronic energy + Delta-G solvation = -26285.583231 eV Core-core repulsion = 21509.485127 eV Total energy + Delta-G solvation = -4776.098104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.54134 -48.09603 -47.99595 -40.97949 -38.63078 -35.37668 -34.91930 -34.00041 -33.12254 -32.58712 -31.34226 -29.72608 -26.17619 -25.49257 -24.58461 -23.18475 -22.06433 -19.50095 -19.08684 -19.07573 -18.39512 -18.24805 -17.51762 -16.70910 -16.48799 -16.45667 -15.81773 -14.98749 -14.91806 -14.83185 -14.78127 -14.57180 -14.45367 -14.17103 -14.16356 -14.05094 -13.98935 -13.73478 -13.33614 -13.22902 -12.80510 -12.24444 -12.03303 -11.99734 -11.71999 -11.29937 -11.24660 -10.64200 -10.57561 -10.34083 -10.25029 -10.06370 -9.88158 -9.28447 -9.10877 -8.72632 -8.57348 -6.74095 -5.36413 0.87685 1.02357 1.77832 2.30357 2.59336 3.04084 3.11426 3.16673 3.28230 3.48701 3.56486 3.82836 4.00953 4.03552 4.56333 4.59087 4.63048 4.66908 4.77707 4.81319 4.85048 5.00861 5.37603 5.64369 5.68474 5.82402 5.90595 6.14388 6.22597 6.40795 6.70285 6.76532 7.28005 7.52769 7.79903 7.92372 8.85191 10.20109 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.002138 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.846573 B =13090.737834 C =13517.571503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.005 7.005 11 O -1.006 7.006 12 N -1.134 6.134 13 C 0.173 3.827 14 C -0.167 4.167 15 C -0.023 4.023 16 C -0.181 4.181 17 C 0.312 3.688 18 O -0.295 6.295 19 C 0.028 3.972 20 C 0.463 3.537 21 F -0.175 7.175 22 F -0.172 7.172 23 F -0.175 7.175 24 N -0.542 5.542 25 C 0.154 3.846 26 H 0.291 0.709 27 H 0.403 0.597 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.670 -16.372 2.277 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.995 6.995 11 O -0.996 6.996 12 N -0.889 5.889 13 C 0.046 3.954 14 C -0.171 4.171 15 C -0.049 4.049 16 C -0.201 4.201 17 C 0.134 3.866 18 O -0.203 6.203 19 C -0.049 4.049 20 C 0.408 3.592 21 F -0.156 7.156 22 F -0.153 7.153 23 F -0.157 7.157 24 N -0.264 5.264 25 C -0.002 4.002 26 H 0.101 0.899 27 H 0.233 0.767 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.264 -16.689 2.123 22.057 hybrid contribution 0.567 0.881 -0.086 1.051 sum 14.831 -15.808 2.037 21.771 Atomic orbital electron populations 1.69892 1.06792 1.30773 1.39973 1.24745 0.94455 1.00841 0.88508 0.86163 0.80133 0.80095 0.79148 1.19253 1.20024 1.18663 1.30525 1.06061 1.11783 1.66980 0.87932 1.00431 0.72047 0.73204 0.72841 1.93383 1.72948 1.87573 1.45627 1.93357 1.72790 1.87483 1.45952 1.56111 1.55559 1.51201 1.26005 1.19865 0.93425 0.91628 0.90498 1.21007 0.97121 0.97428 1.01503 1.21532 0.98712 0.90410 0.94266 1.21052 0.94685 0.99960 1.04406 1.19639 0.89962 0.83981 0.93034 1.86181 1.34388 1.28211 1.71488 1.23571 0.87754 0.91740 1.01865 1.20133 0.76184 0.88763 0.74094 1.93236 1.66609 1.73171 1.82589 1.93229 1.45807 1.96818 1.79451 1.93233 1.94845 1.91719 1.35871 1.67277 1.36219 0.99768 1.23159 1.22427 0.91442 0.93090 0.93253 0.89862 0.76687 0.89447 0.90807 0.83190 0.83758 0.86858 0.86883 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.10 13.19 55.43 0.73 -23.37 16 2 C 0.13 3.56 5.46 -17.82 -0.10 3.46 16 3 Si 0.92 19.80 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -1.02 -26.41 9.72 30.60 0.30 -26.11 16 8 H 0.10 2.38 7.81 -52.49 -0.41 1.97 16 9 S 2.71 67.24 5.02 -107.50 -0.54 66.70 16 10 O -1.00 -28.21 18.02 -57.17 -1.03 -29.24 16 11 O -1.01 -27.54 17.49 -57.17 -1.00 -28.54 16 12 N -1.13 -20.06 5.99 -11.65 -0.07 -20.12 16 13 C 0.17 2.50 6.37 -5.19 -0.03 2.47 16 14 C -0.17 -1.99 5.29 -104.47 -0.55 -2.54 16 15 C -0.02 -0.25 9.85 -39.31 -0.39 -0.64 16 16 C -0.18 -1.86 10.04 -39.27 -0.39 -2.25 16 17 C 0.31 3.49 7.49 -17.12 -0.13 3.36 16 18 O -0.29 -3.05 10.00 -18.73 -0.19 -3.24 16 19 C 0.03 0.23 5.27 37.16 0.20 0.42 16 20 C 0.46 3.83 3.32 37.16 0.12 3.95 16 21 F -0.17 -1.67 17.26 2.25 0.04 -1.63 16 22 F -0.17 -1.38 17.32 2.25 0.04 -1.34 16 23 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 24 N -0.54 -6.15 9.22 -13.33 -0.12 -6.27 16 25 C 0.15 1.71 10.85 -17.57 -0.19 1.52 16 26 H 0.29 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.40 6.29 8.64 -34.47 -0.30 6.00 16 28 H 0.09 1.30 7.70 -51.93 -0.40 0.90 16 29 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.11 0.81 8.10 -51.93 -0.42 0.38 16 33 H 0.11 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -34.49 336.23 -6.00 -40.48 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -2.77 Total: 4.69 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.17 Total: -16.36 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.54 Total: -49.76 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -2.22 Total: -61.02 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.12 Total: -4.57 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 67.24 SS G_CDS: -0.54 Total: 66.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.49 -6.00 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.259 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds