Wall clock time and date at job start Sat Apr 11 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47426 * 270.00482 * 3 2 1 5 5 H 1.48503 * 109.47048 * 30.00762 * 3 2 1 6 6 H 1.48503 * 109.47030 * 150.00410 * 3 2 1 7 7 C 1.37882 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99897 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00177 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40216 * 66.46307 * 9 7 2 11 11 O 1.42098 * 106.40384 * 293.54255 * 9 7 2 12 12 N 1.65595 * 107.21806 * 180.02562 * 9 7 2 13 13 C 1.46500 * 119.99999 * 65.00563 * 12 9 7 14 14 C 1.50704 * 109.47398 * 165.00049 * 13 12 9 15 15 C 1.38830 * 120.34988 * 269.97389 * 14 13 12 16 16 C 1.38381 * 118.48403 * 180.02562 * 15 14 13 17 17 C 1.38925 * 119.10900 * 0.02562 * 16 15 14 18 18 O 1.35677 * 119.68043 * 180.02562 * 17 16 15 19 19 C 1.42901 * 116.99404 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46863 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.46949 * 59.99695 * 20 19 18 22 22 F 1.39898 * 109.47033 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46979 * 300.00261 * 20 19 18 24 24 N 1.32247 * 120.62932 * 0.02562 * 17 16 15 25 25 C 1.31964 * 121.65048 * 359.97438 * 24 17 16 26 26 H 0.97001 * 120.00066 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00270 * 244.99746 * 12 9 7 28 28 H 1.08997 * 109.47439 * 44.99701 * 13 12 9 29 29 H 1.09006 * 109.46623 * 284.99550 * 13 12 9 30 30 H 1.08005 * 120.75911 * 0.04359 * 15 14 13 31 31 H 1.08001 * 120.44529 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47131 * 300.00061 * 19 18 17 33 33 H 1.08997 * 109.47268 * 60.00924 * 19 18 17 34 34 H 1.08004 * 119.58141 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7951 -1.2500 11 8 0.4518 -2.7956 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1392 -4.1089 1.1494 14 6 3.7946 -5.4641 1.0772 15 6 3.1958 -6.5655 1.6735 16 6 3.8316 -7.7914 1.5840 17 6 5.0405 -7.8778 0.9050 18 8 5.6736 -9.0740 0.8097 19 6 6.9127 -9.0973 0.0983 20 6 7.4727 -10.5211 0.0960 21 9 6.5609 -11.3798 -0.5272 22 9 8.6861 -10.5438 -0.5999 23 9 7.6834 -10.9415 1.4137 24 7 5.5801 -6.8051 0.3506 25 6 4.9977 -5.6230 0.4193 26 1 -0.4850 0.8400 0.0004 27 1 2.3171 -4.5325 -0.7618 28 1 2.5621 -4.0331 2.0709 29 1 3.9053 -3.3336 1.1356 30 1 2.2551 -6.4680 2.1951 31 1 3.3938 -8.6692 2.0359 32 1 6.7484 -8.7702 -0.9284 33 1 7.6230 -8.4280 0.5837 34 1 5.4678 -4.7692 -0.0460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:32 Heat of formation + Delta-G solvation = -274.739006 kcal Electronic energy + Delta-G solvation = -26286.797210 eV Core-core repulsion = 21509.485127 eV Total energy + Delta-G solvation = -4777.312083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.054 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22671 -48.76866 -48.70880 -41.80695 -39.45369 -37.36050 -36.25471 -36.07038 -35.10959 -33.45186 -32.24199 -30.58151 -28.19608 -26.57952 -25.34916 -23.93366 -23.01512 -20.99564 -20.23368 -19.76455 -19.32818 -19.09322 -18.97868 -18.25434 -17.55362 -17.36373 -17.22290 -16.68344 -15.97945 -15.75750 -15.68866 -15.58341 -15.44608 -15.16802 -15.14408 -14.87591 -14.86136 -14.79877 -14.45459 -14.11759 -14.09133 -13.87224 -13.27849 -13.15712 -12.97426 -12.84860 -12.49733 -12.44828 -12.36223 -12.26368 -12.21367 -11.20400 -10.97801 -10.93447 -10.73549 -10.16391 -9.59110 -8.70361 -7.42064 -0.04654 0.17874 0.50473 1.08092 1.38916 1.39768 1.54905 1.89415 2.25014 2.62443 2.63062 2.64610 2.88108 3.07820 3.16471 3.28759 3.65644 3.79573 3.94652 3.96135 3.98104 4.08848 4.16504 4.50809 4.62370 4.65668 4.80954 4.90480 5.12845 5.30228 5.32248 5.36255 5.92968 5.96762 6.40112 6.68345 6.84810 8.25605 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.002138 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.846573 B =13090.737834 C =13517.571503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.243 1.243 7 C -1.036 5.036 8 H 0.126 0.874 9 S 2.723 3.277 10 O -1.047 7.047 11 O -1.041 7.041 12 N -1.117 6.117 13 C 0.168 3.832 14 C -0.176 4.176 15 C -0.025 4.025 16 C -0.181 4.181 17 C 0.308 3.692 18 O -0.303 6.303 19 C 0.028 3.972 20 C 0.468 3.532 21 F -0.183 7.183 22 F -0.169 7.169 23 F -0.182 7.182 24 N -0.547 5.547 25 C 0.156 3.844 26 H 0.297 0.703 27 H 0.414 0.586 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 -16.269 2.402 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.166 1.166 7 C -1.169 5.169 8 H 0.144 0.856 9 S 2.824 3.176 10 O -1.037 7.037 11 O -1.031 7.031 12 N -0.877 5.877 13 C 0.042 3.958 14 C -0.180 4.180 15 C -0.051 4.051 16 C -0.201 4.201 17 C 0.129 3.871 18 O -0.211 6.211 19 C -0.049 4.049 20 C 0.413 3.587 21 F -0.164 7.164 22 F -0.150 7.150 23 F -0.163 7.163 24 N -0.270 5.270 25 C 0.000 4.000 26 H 0.107 0.893 27 H 0.247 0.753 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.176 0.824 31 H 0.181 0.819 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 16.448 -16.621 2.245 23.491 hybrid contribution -0.040 0.687 -0.113 0.697 sum 16.408 -15.934 2.133 22.971 Atomic orbital electron populations 1.69997 1.08820 1.32197 1.41716 1.25988 0.95292 1.05380 0.87678 0.85143 0.79321 0.75010 0.79794 1.18328 1.19264 1.16632 1.30914 1.07424 1.12324 1.66264 0.85593 0.99806 0.72521 0.73902 0.71400 1.93318 1.74885 1.88412 1.47118 1.93306 1.74447 1.88218 1.47088 1.55450 1.54966 1.49637 1.27611 1.20053 0.93136 0.93952 0.88666 1.20757 0.97756 0.96277 1.03178 1.21697 0.99026 0.90409 0.93956 1.21247 0.94433 1.00352 1.04108 1.19861 0.90232 0.84141 0.92820 1.86159 1.35246 1.27913 1.71738 1.23722 0.87181 0.91597 1.02429 1.20141 0.76093 0.88730 0.73695 1.93221 1.66950 1.73535 1.82722 1.93235 1.45637 1.96800 1.79359 1.93220 1.94883 1.91832 1.36400 1.67330 1.36339 0.99836 1.23471 1.22685 0.91054 0.93606 0.92634 0.89289 0.75265 0.90208 0.89162 0.82352 0.81931 0.85826 0.85557 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.88 13.19 21.45 0.28 -51.60 16 2 C 0.07 3.69 5.46 84.66 0.46 4.15 16 3 Si 0.99 39.37 29.54 68.60 2.03 41.40 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.24 -8.85 7.11 99.48 0.71 -8.14 16 7 C -1.04 -53.00 9.72 67.74 0.66 -52.34 16 8 H 0.13 5.61 7.81 -2.91 -0.02 5.58 16 9 S 2.72 136.16 5.02 -56.49 -0.28 135.87 16 10 O -1.05 -60.06 18.02 -128.00 -2.31 -62.36 16 11 O -1.04 -58.15 17.49 -128.00 -2.24 -60.39 16 12 N -1.12 -38.66 5.99 -190.78 -1.14 -39.81 16 13 C 0.17 4.63 6.37 85.63 0.55 5.18 16 14 C -0.18 -3.88 5.29 -19.77 -0.10 -3.98 16 15 C -0.02 -0.50 9.85 22.45 0.22 -0.28 16 16 C -0.18 -3.37 10.04 22.47 0.23 -3.15 16 17 C 0.31 6.24 7.49 84.80 0.63 6.88 16 18 O -0.30 -5.69 10.00 -89.95 -0.90 -6.59 16 19 C 0.03 0.39 5.27 71.98 0.38 0.77 16 20 C 0.47 7.07 3.32 71.98 0.24 7.30 16 21 F -0.18 -3.28 17.26 44.97 0.78 -2.50 16 22 F -0.17 -2.46 17.32 44.97 0.78 -1.68 16 23 F -0.18 -3.17 17.26 44.97 0.78 -2.40 16 24 N -0.55 -11.17 9.22 -308.95 -2.85 -14.02 16 25 C 0.16 3.11 10.85 84.63 0.92 4.03 16 26 H 0.30 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.41 12.55 8.64 -96.74 -0.84 11.72 16 28 H 0.08 2.33 7.70 -2.39 -0.02 2.31 16 29 H 0.09 2.19 8.09 -2.38 -0.02 2.17 16 30 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 33 H 0.13 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -74.32 336.23 -0.55 -74.87 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.34 Total: 20.64 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.18 Total: -31.45 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.71 Total: -105.42 kcal Atomic # 8 Polarization: -123.90 SS G_CDS: -5.44 Total: -129.34 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 2.33 Total: -6.58 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 16 Polarization: 136.16 SS G_CDS: -0.28 Total: 135.87 kcal Total: -74.32 -0.55 -74.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.867 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds