Wall clock time and date at job start Sat Apr 11 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46837 * 2 1 4 4 C 1.50699 * 109.46834 * 119.99539 * 2 1 3 5 5 H 1.08004 * 119.99586 * 119.99923 * 4 2 1 6 6 C 1.37871 * 120.00629 * 300.00350 * 4 2 1 7 7 N 1.31517 * 119.99700 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00509 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47002 * 89.99846 * 8 6 4 10 10 H 1.48498 * 109.47142 * 209.99811 * 8 6 4 11 11 H 1.48504 * 109.47113 * 330.00035 * 8 6 4 12 12 N 1.46499 * 109.47178 * 239.99409 * 2 1 3 13 13 S 1.65602 * 119.99591 * 95.98864 * 12 2 1 14 14 O 1.42105 * 106.40492 * 311.04504 * 13 12 2 15 15 O 1.42100 * 106.40234 * 178.12061 * 13 12 2 16 16 C 1.76200 * 107.22000 * 64.58120 * 13 12 2 17 17 C 1.36266 * 120.26468 * 244.02894 * 16 13 12 18 18 C 1.39313 * 121.01579 * 179.97438 * 17 16 13 19 19 C 1.36223 * 121.07520 * 359.97438 * 18 17 16 20 20 C 1.40282 * 119.52058 * 0.02562 * 19 18 17 21 21 C 1.40600 * 122.07462 * 179.97438 * 20 19 18 22 22 Cl 1.73602 * 120.07634 * 359.97438 * 21 20 19 23 23 N 1.31359 * 119.84861 * 180.02562 * 21 20 19 24 24 C 1.32638 * 122.75617 * 359.97438 * 23 21 20 25 25 C 1.36129 * 121.90337 * 0.02562 * 24 23 21 26 26 C 1.40188 * 120.25767 * 63.74626 * 16 13 12 27 27 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47575 * 300.00075 * 1 2 3 29 29 H 1.08999 * 109.46812 * 60.00687 * 1 2 3 30 30 H 0.97000 * 120.00454 * 180.02562 * 7 6 4 31 31 H 0.96996 * 120.00633 * 275.98367 * 12 2 1 32 32 H 1.08004 * 119.48746 * 359.97438 * 17 16 13 33 33 H 1.08001 * 119.46017 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.24383 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.04589 * 179.97438 * 24 23 21 36 36 H 1.08002 * 120.65047 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9491 5.1120 11 1 2.4857 -2.5662 3.7121 12 7 2.0184 -0.6907 -1.1961 13 16 2.4354 0.1791 -2.5421 14 8 1.3581 1.0711 -2.7933 15 8 2.9047 -0.7616 -3.4983 16 6 3.8191 1.1801 -2.1084 17 6 3.7141 2.5386 -2.1188 18 6 4.7979 3.3450 -1.7781 19 6 5.9953 2.8007 -1.4237 20 6 6.1410 1.4057 -1.4016 21 6 7.3521 0.7870 -1.0448 22 17 8.7286 1.7531 -0.6137 23 7 7.4400 -0.5236 -1.0393 24 6 6.4229 -1.3124 -1.3595 25 6 5.2093 -0.8114 -1.7189 26 6 5.0350 0.5849 -1.7441 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.7094 1.1619 3.4843 31 1 2.0975 -1.6574 -1.1996 32 1 2.7762 2.9973 -2.3954 33 1 4.6868 4.4192 -1.7953 34 1 6.8265 3.4385 -1.1617 35 1 6.5619 -2.3831 -1.3352 36 1 4.3947 -1.4726 -1.9754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194522656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:35 Heat of formation + Delta-G solvation = -24.695845 kcal Electronic energy + Delta-G solvation = -25403.670331 eV Core-core repulsion = 21619.766838 eV Total energy + Delta-G solvation = -3783.903493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96572 -37.66765 -36.98768 -36.75511 -35.58539 -35.48641 -33.07118 -32.28485 -31.46231 -29.83559 -28.38585 -25.28686 -24.51926 -23.93195 -22.91815 -21.05779 -19.28509 -18.31545 -18.03872 -17.47646 -17.00136 -16.28245 -16.05751 -15.43917 -15.10853 -14.83374 -14.74104 -14.55136 -14.07503 -13.65771 -13.13806 -12.74585 -12.70237 -12.48850 -12.28798 -12.01869 -11.81824 -11.80674 -11.76298 -11.64161 -11.39968 -11.23942 -11.04998 -10.68662 -10.64813 -10.36641 -10.26047 -10.16426 -9.78352 -9.32808 -9.29587 -8.70825 -8.41685 -8.37696 -6.20741 -4.29209 -0.09303 0.72514 0.82695 1.47859 1.55216 2.75115 3.19718 3.27247 3.28708 3.47109 3.74530 4.08802 4.26723 4.28903 4.37451 4.55945 4.65795 4.73941 4.83708 5.11559 5.12544 5.24248 5.43791 5.50748 5.63589 5.80346 5.98061 6.08504 6.20054 6.28286 6.56192 6.73525 6.96748 7.00572 7.49262 7.58736 7.60307 7.70080 7.95099 8.17618 8.73531 9.37818 10.84860 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.005560 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.593167 B = 5035.131132 C = 6411.269165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.276 3.724 3 H 0.040 0.960 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 N -1.097 6.097 13 S 2.689 3.311 14 O -0.958 6.958 15 O -0.975 6.975 16 C -0.663 4.663 17 C 0.028 3.972 18 C -0.138 4.138 19 C -0.036 4.036 20 C -0.115 4.115 21 C 0.222 3.778 22 Cl -0.024 7.024 23 N -0.482 5.482 24 C 0.111 3.889 25 C -0.158 4.158 26 C 0.071 3.929 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.170 0.830 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 3.143 -7.810 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.172 3.828 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.859 5.859 13 S 2.776 3.224 14 O -0.948 6.948 15 O -0.965 6.965 16 C -0.747 4.747 17 C 0.008 3.992 18 C -0.157 4.157 19 C -0.055 4.055 20 C -0.119 4.119 21 C 0.044 3.956 22 Cl 0.005 6.995 23 N -0.193 5.193 24 C -0.032 4.032 25 C -0.178 4.178 26 C 0.065 3.935 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.187 0.813 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.819 3.015 -8.219 13.155 hybrid contribution 0.322 -0.050 1.385 1.423 sum 10.140 2.965 -6.834 12.583 Atomic orbital electron populations 1.22230 0.97879 1.00077 1.01529 1.18540 0.91572 0.92001 0.80651 0.94227 1.21255 1.32096 1.13301 0.89919 0.91751 1.24892 0.94758 0.94988 0.99044 1.69868 1.35922 1.22537 1.24003 0.86514 0.78617 0.80089 0.82340 1.20633 1.21005 1.19723 1.55580 1.80374 1.18262 1.31712 1.02049 0.73563 0.73631 0.73192 1.93570 1.50485 1.66624 1.84095 1.93550 1.82217 1.61266 1.59472 1.31086 1.16793 1.08963 1.17832 1.21061 0.99250 0.91803 0.87093 1.21093 0.92781 1.00966 1.00846 1.21308 0.98290 0.92992 0.92944 1.18503 0.93015 0.95208 1.05127 1.21844 0.87370 0.89957 0.96428 1.98394 1.42299 1.67938 1.90888 1.66745 1.33587 1.04038 1.14898 1.22056 0.87256 0.99698 0.94156 1.22253 1.00568 0.94276 1.00658 1.17275 0.91223 0.92809 0.92171 0.94756 0.88916 0.95593 0.92512 0.75543 0.83000 0.84079 0.83989 0.81337 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.29 37.16 0.35 -3.27 16 2 C 0.28 6.30 2.77 -69.08 -0.19 6.11 16 3 H 0.04 0.96 7.83 -51.93 -0.41 0.56 16 4 C -0.53 -13.04 8.76 -34.44 -0.30 -13.35 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.50 11.32 55.43 0.63 -22.87 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -1.10 -20.68 5.07 -5.88 -0.03 -20.71 16 13 S 2.69 48.13 4.87 -107.50 -0.52 47.60 16 14 O -0.96 -18.99 16.33 -57.17 -0.93 -19.92 16 15 O -0.98 -17.94 16.25 -57.17 -0.93 -18.87 16 16 C -0.66 -11.11 5.72 -39.56 -0.23 -11.34 16 17 C 0.03 0.41 9.48 -39.89 -0.38 0.04 16 18 C -0.14 -1.68 9.94 -39.91 -0.40 -2.08 16 19 C -0.04 -0.45 9.46 -39.54 -0.37 -0.82 16 20 C -0.11 -1.76 5.74 -106.83 -0.61 -2.37 16 21 C 0.22 3.32 7.36 -16.86 -0.12 3.20 16 22 Cl -0.02 -0.29 27.77 -51.86 -1.44 -1.73 16 23 N -0.48 -7.44 10.29 -10.27 -0.11 -7.54 16 24 C 0.11 1.60 11.06 -17.96 -0.20 1.40 16 25 C -0.16 -2.48 9.12 -39.40 -0.36 -2.84 16 26 C 0.07 1.20 5.74 -106.81 -0.61 0.58 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.03 0.56 7.74 -51.93 -0.40 0.15 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.41 6.85 8.84 -34.47 -0.30 6.54 16 32 H 0.15 2.00 7.28 -52.48 -0.38 1.61 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.39 7.07 -52.49 -0.37 1.02 16 35 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.15 2.26 5.72 -52.49 -0.30 1.95 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -30.58 333.43 -10.15 -40.73 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.30 Total: 6.30 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.53 Total: -23.14 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.49 Total: -51.13 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.86 Total: -38.79 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.52 Total: 47.60 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.58 -10.15 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194522656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.032 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds