Wall clock time and date at job start Sat Apr 11 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46837 * 2 1 4 4 C 1.50699 * 109.46834 * 119.99539 * 2 1 3 5 5 H 1.08004 * 119.99586 * 119.99923 * 4 2 1 6 6 C 1.37871 * 120.00629 * 300.00350 * 4 2 1 7 7 N 1.31517 * 119.99700 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00509 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47002 * 89.99846 * 8 6 4 10 10 H 1.48498 * 109.47142 * 209.99811 * 8 6 4 11 11 H 1.48504 * 109.47113 * 330.00035 * 8 6 4 12 12 N 1.46499 * 109.47178 * 239.99409 * 2 1 3 13 13 S 1.65602 * 119.99591 * 95.98864 * 12 2 1 14 14 O 1.42105 * 106.40492 * 311.04504 * 13 12 2 15 15 O 1.42100 * 106.40234 * 178.12061 * 13 12 2 16 16 C 1.76200 * 107.22000 * 64.58120 * 13 12 2 17 17 C 1.36266 * 120.26468 * 244.02894 * 16 13 12 18 18 C 1.39313 * 121.01579 * 179.97438 * 17 16 13 19 19 C 1.36223 * 121.07520 * 359.97438 * 18 17 16 20 20 C 1.40282 * 119.52058 * 0.02562 * 19 18 17 21 21 C 1.40600 * 122.07462 * 179.97438 * 20 19 18 22 22 Cl 1.73602 * 120.07634 * 359.97438 * 21 20 19 23 23 N 1.31359 * 119.84861 * 180.02562 * 21 20 19 24 24 C 1.32638 * 122.75617 * 359.97438 * 23 21 20 25 25 C 1.36129 * 121.90337 * 0.02562 * 24 23 21 26 26 C 1.40188 * 120.25767 * 63.74626 * 16 13 12 27 27 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47575 * 300.00075 * 1 2 3 29 29 H 1.08999 * 109.46812 * 60.00687 * 1 2 3 30 30 H 0.97000 * 120.00454 * 180.02562 * 7 6 4 31 31 H 0.96996 * 120.00633 * 275.98367 * 12 2 1 32 32 H 1.08004 * 119.48746 * 359.97438 * 17 16 13 33 33 H 1.08001 * 119.46017 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.24383 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.04589 * 179.97438 * 24 23 21 36 36 H 1.08002 * 120.65047 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9491 5.1120 11 1 2.4857 -2.5662 3.7121 12 7 2.0184 -0.6907 -1.1961 13 16 2.4354 0.1791 -2.5421 14 8 1.3581 1.0711 -2.7933 15 8 2.9047 -0.7616 -3.4983 16 6 3.8191 1.1801 -2.1084 17 6 3.7141 2.5386 -2.1188 18 6 4.7979 3.3450 -1.7781 19 6 5.9953 2.8007 -1.4237 20 6 6.1410 1.4057 -1.4016 21 6 7.3521 0.7870 -1.0448 22 17 8.7286 1.7531 -0.6137 23 7 7.4400 -0.5236 -1.0393 24 6 6.4229 -1.3124 -1.3595 25 6 5.2093 -0.8114 -1.7189 26 6 5.0350 0.5849 -1.7441 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.7094 1.1619 3.4843 31 1 2.0975 -1.6574 -1.1996 32 1 2.7762 2.9973 -2.3954 33 1 4.6868 4.4192 -1.7953 34 1 6.8265 3.4385 -1.1617 35 1 6.5619 -2.3831 -1.3352 36 1 4.3947 -1.4726 -1.9754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194522656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:35 Heat of formation + Delta-G solvation = -44.943044 kcal Electronic energy + Delta-G solvation = -25404.548316 eV Core-core repulsion = 21619.766838 eV Total energy + Delta-G solvation = -3784.781478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06470 -38.78126 -38.35731 -37.88320 -37.30485 -36.98571 -34.27915 -34.03172 -32.57602 -30.92978 -30.14860 -27.22493 -25.62806 -25.03312 -24.07634 -22.85840 -20.66215 -19.43209 -19.37083 -18.95305 -18.29532 -17.75878 -17.37720 -17.07007 -16.47456 -16.09294 -15.95326 -15.72256 -15.44571 -15.07745 -14.53339 -14.18890 -14.02319 -13.85844 -13.60131 -13.51172 -13.31840 -13.13655 -13.10422 -13.00211 -12.85277 -12.85013 -12.45048 -12.40437 -12.22534 -12.03588 -11.89339 -11.34299 -11.13345 -10.90978 -10.59101 -10.44347 -10.14779 -9.47620 -8.14540 -6.27670 -1.21044 -0.57352 -0.38357 0.32729 0.47102 1.42024 1.45176 1.52870 1.68373 2.03215 2.42995 2.53802 2.76587 3.11786 3.15938 3.33691 3.48940 3.50310 3.60850 3.74343 4.00065 4.21973 4.37413 4.40815 4.48437 4.53350 4.80283 4.86875 4.93608 5.04080 5.11458 5.16948 5.20992 5.52707 5.59426 5.74798 6.03050 6.07427 6.39248 6.47399 6.82509 7.41840 8.90689 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.005560 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.593167 B = 5035.131132 C = 6411.269165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.283 3.717 3 H 0.023 0.977 4 C -0.534 4.534 5 H 0.068 0.932 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.266 1.266 12 N -1.097 6.097 13 S 2.705 3.295 14 O -0.981 6.981 15 O -0.983 6.983 16 C -0.688 4.688 17 C 0.024 3.976 18 C -0.136 4.136 19 C -0.028 4.028 20 C -0.133 4.133 21 C 0.217 3.783 22 Cl 0.000 7.000 23 N -0.498 5.498 24 C 0.113 3.887 25 C -0.182 4.182 26 C 0.051 3.949 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.419 0.581 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.200 0.800 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 3.679 -7.577 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.178 3.822 3 H 0.040 0.960 4 C -0.573 4.573 5 H 0.086 0.914 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.208 1.208 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.858 5.858 13 S 2.795 3.205 14 O -0.972 6.972 15 O -0.973 6.973 16 C -0.775 4.775 17 C 0.003 3.997 18 C -0.154 4.154 19 C -0.048 4.048 20 C -0.137 4.137 21 C 0.039 3.961 22 Cl 0.029 6.971 23 N -0.209 5.209 24 C -0.030 4.030 25 C -0.202 4.202 26 C 0.045 3.955 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.254 0.746 32 H 0.179 0.821 33 H 0.202 0.798 34 H 0.191 0.809 35 H 0.216 0.784 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.337 3.514 -8.005 14.316 hybrid contribution -0.059 -0.135 1.268 1.277 sum 11.278 3.379 -6.737 13.565 Atomic orbital electron populations 1.22140 0.98187 1.00171 1.00709 1.18222 0.91265 0.91291 0.81444 0.95960 1.21568 1.31702 1.13334 0.90711 0.91354 1.25566 0.95093 0.95648 1.01515 1.69977 1.36979 1.23685 1.24416 0.85660 0.77801 0.79399 0.79418 1.20823 1.20961 1.18998 1.55363 1.80864 1.18868 1.30739 1.01313 0.73420 0.73189 0.72561 1.93531 1.52159 1.67029 1.84447 1.93531 1.82347 1.61845 1.59568 1.30751 1.16219 1.09729 1.20771 1.21445 1.00652 0.91390 0.86164 1.21537 0.91572 1.02844 0.99439 1.21735 0.99437 0.92201 0.91387 1.18767 0.92847 0.96455 1.05663 1.22121 0.88095 0.90188 0.95724 1.98396 1.40943 1.67221 1.90573 1.66858 1.33941 1.04442 1.15634 1.22548 0.86559 1.01098 0.92746 1.22402 1.01371 0.94285 1.02106 1.17510 0.91710 0.93572 0.92716 0.94160 0.91023 0.95050 0.92592 0.74575 0.82074 0.79841 0.80919 0.78364 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.06 9.29 71.98 0.67 -6.39 16 2 C 0.28 13.00 2.77 44.25 0.12 13.12 16 3 H 0.02 1.11 7.83 -2.39 -0.02 1.09 16 4 C -0.53 -26.38 8.76 25.60 0.22 -26.16 16 5 H 0.07 3.25 7.81 -2.91 -0.02 3.22 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -48.67 11.32 21.45 0.24 -48.43 16 8 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 N -1.10 -41.59 5.07 -172.53 -0.87 -42.46 16 13 S 2.70 97.48 4.87 -56.49 -0.27 97.21 16 14 O -0.98 -39.22 16.33 -128.00 -2.09 -41.31 16 15 O -0.98 -36.35 16.25 -128.00 -2.08 -38.43 16 16 C -0.69 -22.89 5.72 22.28 0.13 -22.76 16 17 C 0.02 0.67 9.48 22.07 0.21 0.88 16 18 C -0.14 -2.93 9.94 22.06 0.22 -2.71 16 19 C -0.03 -0.64 9.46 22.30 0.21 -0.43 16 20 C -0.13 -3.90 5.74 -21.29 -0.12 -4.02 16 21 C 0.22 6.14 7.36 85.34 0.63 6.77 16 22 Cl 0.00 0.00 27.77 -2.72 -0.08 -0.08 16 23 N -0.50 -14.73 10.29 -186.40 -1.92 -16.65 16 24 C 0.11 3.14 11.06 84.08 0.93 4.07 16 25 C -0.18 -5.67 9.12 22.39 0.20 -5.47 16 26 C 0.05 1.69 5.74 -21.28 -0.12 1.57 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 29 H 0.03 1.37 7.74 -2.39 -0.02 1.35 16 30 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 31 H 0.42 14.04 8.84 -96.75 -0.86 13.18 16 32 H 0.16 4.10 7.28 -2.91 -0.02 4.08 16 33 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.17 2.74 7.07 -2.91 -0.02 2.72 16 35 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.15 4.57 5.72 -2.91 -0.02 4.55 16 Total: -1.00 -64.77 333.43 -1.00 -65.76 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.30 Total: 21.38 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.75 Total: -39.95 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -2.55 Total: -107.54 kcal Atomic # 8 Polarization: -75.58 SS G_CDS: -4.17 Total: -79.75 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 97.48 SS G_CDS: -0.27 Total: 97.21 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -64.77 -1.00 -65.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194522656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.821 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds