Wall clock time and date at job start Sat Apr 11 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.34665 * 272.36299 * 12 11 10 14 14 C 1.42894 * 114.00234 * 243.92798 * 13 12 11 15 15 C 1.50703 * 109.47334 * 180.02562 * 14 13 12 16 16 C 1.38231 * 119.61621 * 359.72570 * 15 14 13 17 17 C 1.38629 * 119.16199 * 179.75193 * 16 15 14 18 18 C 1.38672 * 118.41780 * 0.51931 * 17 16 15 19 19 C 1.38180 * 119.16457 * 359.71936 * 18 17 16 20 20 C 1.50700 * 119.61756 * 180.02562 * 19 18 17 21 21 Br 1.96604 * 109.47281 * 270.02549 * 20 19 18 22 22 N 1.31851 * 119.62175 * 180.02562 * 15 14 13 23 23 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 28 28 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 29 29 H 1.09007 * 114.16931 * 139.67588 * 12 11 10 30 30 H 1.09001 * 109.47467 * 299.99814 * 14 13 12 31 31 H 1.09001 * 109.47474 * 60.00448 * 14 13 12 32 32 H 1.08003 * 120.41852 * 359.97438 * 16 15 14 33 33 H 1.07993 * 120.78975 * 180.21653 * 17 16 15 34 34 H 1.08001 * 120.41735 * 179.75135 * 18 17 16 35 35 H 1.09002 * 109.46891 * 30.02648 * 20 19 18 36 36 H 1.08995 * 109.46851 * 150.02706 * 20 19 18 37 37 H 1.08997 * 113.47356 * 253.46676 * 23 10 9 38 38 H 1.08999 * 113.47165 * 23.87538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3468 -5.0423 0.3458 14 6 6.0478 -6.0454 1.0837 15 6 5.7723 -7.3982 0.4794 16 6 4.9399 -7.4987 -0.6197 17 6 4.6971 -8.7472 -1.1712 18 6 5.2945 -9.8541 -0.5874 19 6 6.1109 -9.6765 0.5132 20 6 6.7658 -10.8723 1.1554 21 35 5.5860 -11.5941 2.5527 22 7 6.3231 -8.4728 1.0086 23 6 5.4559 -2.6254 -0.2387 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 4.4654 -2.2360 2.0761 28 1 3.5271 -3.7542 1.7430 29 1 6.4047 -3.6238 1.4985 30 1 7.1181 -5.8425 1.0465 31 1 5.7118 -6.0351 2.1205 32 1 4.4874 -6.6153 -1.0456 33 1 4.0540 -8.8557 -2.0320 34 1 5.1243 -10.8424 -0.9882 35 1 6.9450 -11.6376 0.4002 36 1 7.7143 -10.5717 1.6003 37 1 5.7214 -2.9782 -1.2352 38 1 5.9699 -1.7034 0.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222721971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:43 Heat of formation + Delta-G solvation = 38.459333 kcal Electronic energy + Delta-G solvation = -20449.462405 eV Core-core repulsion = 17146.950063 eV Total energy + Delta-G solvation = -3302.512342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60887 -39.68611 -36.79363 -33.77969 -32.91654 -32.67664 -30.78247 -29.68677 -27.55152 -26.39598 -25.55815 -25.19393 -22.67214 -21.91771 -21.33666 -19.54262 -17.01043 -16.81432 -16.73666 -16.26320 -15.71536 -15.54895 -15.17950 -14.57178 -14.40777 -13.96498 -13.86377 -13.78775 -13.24241 -13.10028 -12.74687 -12.45867 -12.24128 -12.19988 -11.86117 -11.49338 -11.21712 -10.82866 -10.52259 -10.36371 -10.22504 -10.03507 -9.98869 -9.78423 -9.69368 -9.40637 -9.34432 -8.95213 -8.57953 -7.95262 -6.04769 -4.01970 0.57662 0.98540 1.59786 3.14586 3.25833 3.33947 3.34814 3.54733 3.90603 4.24300 4.40712 4.47715 4.71369 4.73104 4.78575 4.82105 5.00271 5.09852 5.12996 5.20476 5.25690 5.34616 5.45241 5.49088 5.66895 5.80208 5.91468 6.01378 6.06045 6.11387 6.25632 6.44816 6.50019 6.68744 7.27653 7.33026 7.67633 7.70139 7.85461 8.64268 9.06857 9.56346 11.08741 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.001986 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.732983 B =14094.108330 C =14284.566884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.066 3.934 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.125 3.875 10 N -0.444 5.444 11 C -0.009 4.009 12 C 0.059 3.941 13 O -0.347 6.347 14 C 0.112 3.888 15 C 0.135 3.865 16 C -0.134 4.134 17 C -0.073 4.073 18 C -0.159 4.159 19 C 0.114 3.886 20 C -0.025 4.025 21 Br -0.141 7.141 22 N -0.470 5.470 23 C -0.010 4.010 24 H 0.263 0.737 25 H 0.027 0.973 26 H -0.005 1.005 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.605 -24.239 2.367 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.002 4.002 10 N -0.166 5.166 11 C -0.138 4.138 12 C 0.000 4.000 13 O -0.265 6.265 14 C 0.034 3.966 15 C -0.003 4.003 16 C -0.154 4.154 17 C -0.099 4.099 18 C -0.179 4.179 19 C -0.025 4.025 20 C -0.141 4.141 21 Br -0.061 7.061 22 N -0.181 5.181 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.013 0.987 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.983 -24.642 2.956 30.073 hybrid contribution 0.594 1.674 -0.305 1.802 sum 17.577 -22.968 2.652 29.044 Atomic orbital electron populations 1.69899 1.06116 1.26781 1.51147 1.24941 0.94769 0.98829 0.94971 0.86861 0.80328 0.84114 0.78430 1.20325 1.19280 1.21069 1.20968 0.88557 0.94791 1.49982 0.90161 1.20762 0.98196 0.85749 0.95504 1.69004 1.09946 1.22879 1.14791 1.24261 0.96582 0.99209 0.93790 1.23275 0.97601 0.82217 0.96886 1.87895 1.70264 1.14189 1.54160 1.20955 0.96537 0.84025 0.95046 1.20782 0.93500 0.93125 0.92924 1.22174 0.97693 0.99281 0.96263 1.21672 0.97139 0.92070 0.99035 1.21873 0.98498 1.00295 0.97272 1.20470 0.96661 0.91763 0.93581 1.23422 0.98129 0.96221 0.96300 1.97460 1.68141 1.86139 1.54333 1.66879 1.22914 0.97953 1.30401 1.24099 0.93691 0.96133 1.00010 0.92671 0.95468 0.98733 0.91033 0.89730 0.90565 0.91042 0.90778 0.82772 0.84216 0.84684 0.86597 0.86476 0.89745 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.50 -14.72 9.94 -34.44 -0.34 -15.07 16 8 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.13 3.05 3.64 -4.98 -0.02 3.03 16 10 N -0.44 -9.43 6.32 -246.10 -1.55 -10.99 16 11 C -0.01 -0.16 7.56 -7.54 -0.06 -0.21 16 12 C 0.06 0.84 4.65 -26.20 -0.12 0.72 16 13 O -0.35 -5.03 8.85 -35.23 -0.31 -5.34 16 14 C 0.11 1.32 6.32 36.01 0.23 1.55 16 15 C 0.13 1.66 6.78 -82.59 -0.56 1.10 16 16 C -0.13 -1.60 9.41 -39.44 -0.37 -1.97 16 17 C -0.07 -0.71 10.18 -39.28 -0.40 -1.11 16 18 C -0.16 -1.39 9.74 -39.44 -0.38 -1.77 16 19 C 0.11 1.11 6.09 -82.59 -0.50 0.61 16 20 C -0.02 -0.18 6.89 36.01 0.25 0.07 16 21 Br -0.14 -1.26 33.92 -68.01 -2.31 -3.57 16 22 N -0.47 -5.57 10.19 -5.74 -0.06 -5.63 16 23 C -0.01 -0.16 7.52 -7.54 -0.06 -0.22 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 26 H -0.01 -0.12 6.73 -51.93 -0.35 -0.47 16 27 H 0.07 1.22 7.42 -51.93 -0.39 0.83 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.15 2.00 7.00 -52.48 -0.37 1.63 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.05 7.91 -51.93 -0.41 0.64 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -33.18 340.99 -10.69 -43.87 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.26 Total: -1.68 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.44 Total: -11.43 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.84 Total: -43.83 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.31 Total: -5.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.31 Total: -3.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.18 -10.69 -43.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222721971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.329 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds