Wall clock time and date at job start Sat Apr 11 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.34665 * 272.36299 * 12 11 10 14 14 C 1.42894 * 114.00234 * 243.92798 * 13 12 11 15 15 C 1.50703 * 109.47334 * 180.02562 * 14 13 12 16 16 C 1.38231 * 119.61621 * 359.72570 * 15 14 13 17 17 C 1.38629 * 119.16199 * 179.75193 * 16 15 14 18 18 C 1.38672 * 118.41780 * 0.51931 * 17 16 15 19 19 C 1.38180 * 119.16457 * 359.71936 * 18 17 16 20 20 C 1.50700 * 119.61756 * 180.02562 * 19 18 17 21 21 Br 1.96604 * 109.47281 * 270.02549 * 20 19 18 22 22 N 1.31851 * 119.62175 * 180.02562 * 15 14 13 23 23 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 28 28 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 29 29 H 1.09007 * 114.16931 * 139.67588 * 12 11 10 30 30 H 1.09001 * 109.47467 * 299.99814 * 14 13 12 31 31 H 1.09001 * 109.47474 * 60.00448 * 14 13 12 32 32 H 1.08003 * 120.41852 * 359.97438 * 16 15 14 33 33 H 1.07993 * 120.78975 * 180.21653 * 17 16 15 34 34 H 1.08001 * 120.41735 * 179.75135 * 18 17 16 35 35 H 1.09002 * 109.46891 * 30.02648 * 20 19 18 36 36 H 1.08995 * 109.46851 * 150.02706 * 20 19 18 37 37 H 1.08997 * 113.47356 * 253.46676 * 23 10 9 38 38 H 1.08999 * 113.47165 * 23.87538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3468 -5.0423 0.3458 14 6 6.0478 -6.0454 1.0837 15 6 5.7723 -7.3982 0.4794 16 6 4.9399 -7.4987 -0.6197 17 6 4.6971 -8.7472 -1.1712 18 6 5.2945 -9.8541 -0.5874 19 6 6.1109 -9.6765 0.5132 20 6 6.7658 -10.8723 1.1554 21 35 5.5860 -11.5941 2.5527 22 7 6.3231 -8.4728 1.0086 23 6 5.4559 -2.6254 -0.2387 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 4.4654 -2.2360 2.0761 28 1 3.5271 -3.7542 1.7430 29 1 6.4047 -3.6238 1.4985 30 1 7.1181 -5.8425 1.0465 31 1 5.7118 -6.0351 2.1205 32 1 4.4874 -6.6153 -1.0456 33 1 4.0540 -8.8557 -2.0320 34 1 5.1243 -10.8424 -0.9882 35 1 6.9450 -11.6376 0.4002 36 1 7.7143 -10.5717 1.6003 37 1 5.7214 -2.9782 -1.2352 38 1 5.9699 -1.7034 0.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222721971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:43 Heat of formation + Delta-G solvation = 14.260213 kcal Electronic energy + Delta-G solvation = -20450.511757 eV Core-core repulsion = 17146.950063 eV Total energy + Delta-G solvation = -3303.561694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45261 -40.98135 -37.95700 -34.98848 -34.44579 -33.64967 -31.80642 -31.17799 -28.45209 -27.22162 -27.06250 -26.68220 -23.50508 -23.13139 -22.71535 -20.84306 -18.97419 -17.97696 -17.66275 -17.25646 -16.72105 -16.71902 -16.36950 -16.00948 -15.66996 -15.18468 -14.93546 -14.74309 -14.49722 -14.33133 -13.90828 -13.69159 -13.52959 -13.37138 -13.01403 -12.80952 -12.67221 -12.27561 -12.13783 -11.76443 -11.51022 -11.45379 -11.03305 -10.90405 -10.81072 -10.80143 -10.53302 -10.47415 -9.77155 -9.52547 -8.30392 -6.34967 -0.16253 0.20504 0.95826 1.32793 1.36176 1.46991 2.19951 2.33120 2.76113 3.01843 3.11270 3.37588 3.45785 3.63531 3.78862 3.99122 4.04813 4.20987 4.23780 4.32155 4.40760 4.45664 4.48468 4.52051 4.62754 4.65848 4.69322 4.74670 4.78248 4.88096 4.96389 5.16342 5.25465 5.49312 5.65977 5.75738 5.99419 6.26075 6.60036 6.71239 6.86552 7.28490 8.87223 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.001986 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.732983 B =14094.108330 C =14284.566884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.246 1.246 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.025 0.975 9 C 0.137 3.863 10 N -0.487 5.487 11 C -0.018 4.018 12 C 0.082 3.918 13 O -0.367 6.367 14 C 0.112 3.888 15 C 0.116 3.884 16 C -0.157 4.157 17 C -0.075 4.075 18 C -0.153 4.153 19 C 0.106 3.894 20 C -0.018 4.018 21 Br -0.161 7.161 22 N -0.486 5.486 23 C -0.007 4.007 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.008 0.992 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.650 -24.499 2.387 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.169 1.169 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.043 0.957 9 C 0.009 3.991 10 N -0.209 5.209 11 C -0.147 4.147 12 C 0.024 3.976 13 O -0.285 6.285 14 C 0.035 3.965 15 C -0.021 4.021 16 C -0.177 4.177 17 C -0.101 4.101 18 C -0.174 4.174 19 C -0.033 4.033 20 C -0.133 4.133 21 Br -0.081 7.081 22 N -0.198 5.198 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.050 -24.928 2.978 32.129 hybrid contribution -0.417 1.569 -0.342 1.659 sum 19.633 -23.359 2.636 30.627 Atomic orbital electron populations 1.70079 1.08389 1.28240 1.52534 1.26010 0.95731 1.03593 0.94168 0.85589 0.79396 0.77813 0.79372 1.18761 1.16911 1.20693 1.21243 0.91518 0.92922 1.50146 0.95691 1.20523 0.94685 0.88133 0.95783 1.68899 1.13798 1.20895 1.17358 1.24366 0.98171 0.99601 0.92565 1.23119 0.96864 0.81700 0.95933 1.87889 1.71064 1.14736 1.54796 1.21067 0.97335 0.83366 0.94684 1.20872 0.94209 0.93619 0.93395 1.22126 0.98723 0.99721 0.97135 1.21964 0.97106 0.91538 0.99458 1.22234 0.97223 1.01373 0.96545 1.20983 0.96583 0.91874 0.93825 1.23593 0.97400 0.95966 0.96375 1.97469 1.68929 1.86196 1.55468 1.66910 1.23466 0.98528 1.30862 1.24185 0.90443 0.97923 1.01070 0.92377 0.95394 0.97413 0.89902 0.91932 0.86096 0.89005 0.90585 0.84721 0.82219 0.81468 0.83326 0.85775 0.89497 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 2 C 0.00 0.10 5.47 84.66 0.46 0.57 16 3 Si 0.96 44.15 27.47 68.60 1.88 46.04 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -31.48 9.94 25.60 0.25 -31.22 16 8 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.14 6.62 3.64 85.55 0.31 6.93 16 10 N -0.49 -20.78 6.32 -932.92 -5.89 -26.67 16 11 C -0.02 -0.62 7.56 83.58 0.63 0.01 16 12 C 0.08 2.20 4.65 30.94 0.14 2.34 16 13 O -0.37 -10.42 8.85 -148.98 -1.32 -11.74 16 14 C 0.11 2.54 6.32 71.24 0.45 2.99 16 15 C 0.12 2.83 6.78 42.55 0.29 3.11 16 16 C -0.16 -3.79 9.41 22.36 0.21 -3.58 16 17 C -0.08 -1.38 10.18 22.47 0.23 -1.15 16 18 C -0.15 -2.34 9.74 22.36 0.22 -2.13 16 19 C 0.11 1.87 6.09 42.54 0.26 2.12 16 20 C -0.02 -0.21 6.89 71.24 0.49 0.28 16 21 Br -0.16 -2.63 33.92 -20.37 -0.69 -3.32 16 22 N -0.49 -10.96 10.19 -172.07 -1.75 -12.72 16 23 C -0.01 -0.22 7.52 83.57 0.63 0.40 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.34 7.14 -2.38 -0.02 1.32 16 26 H 0.01 0.37 6.73 -2.39 -0.02 0.35 16 27 H 0.08 2.71 7.42 -2.39 -0.02 2.70 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.12 2.22 7.88 -2.38 -0.02 2.20 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.13 3.71 7.00 -2.91 -0.02 3.69 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 0.74 8.08 -2.39 -0.02 0.72 16 36 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.09 2.47 7.91 -2.39 -0.02 2.45 16 Total: -1.00 -75.97 340.99 -1.89 -77.86 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.00 Total: 10.78 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.58 Total: -19.31 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -7.35 Total: -100.30 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.32 Total: -11.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Atomic # 35 Polarization: -2.63 SS G_CDS: -0.69 Total: -3.32 kcal Total: -75.97 -1.89 -77.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222721971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.122 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds