Wall clock time and date at job start Sat Apr 11 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48509 * 109.47161 * 240.00325 * 3 2 1 5 5 H 1.48499 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47246 * 120.00283 * 3 2 1 7 7 C 1.38818 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99885 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65152 * 0.02575 * 9 7 2 11 11 C 1.54322 * 107.27223 * 181.03573 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.19795 * 11 10 9 13 13 H 1.08999 * 111.00353 * 82.56825 * 12 11 10 14 14 O 1.42901 * 111.00427 * 206.42102 * 12 11 10 15 15 C 1.42903 * 113.99775 * 203.64709 * 14 12 11 16 16 C 1.50704 * 109.46706 * 180.02562 * 15 14 12 17 17 C 1.38229 * 119.61916 * 359.72935 * 16 15 14 18 18 C 1.38628 * 119.15767 * 179.71244 * 17 16 15 19 19 C 1.38668 * 118.42149 * 0.54665 * 18 17 16 20 20 C 1.38187 * 119.16409 * 359.73647 * 19 18 17 21 21 C 1.50701 * 119.61826 * 179.97438 * 20 19 18 22 22 Br 1.96598 * 109.47338 * 269.98048 * 21 20 19 23 23 N 1.31853 * 119.61485 * 180.02562 * 16 15 14 24 24 C 1.47426 * 125.64638 * 180.02562 * 9 7 2 25 25 H 0.97001 * 119.99871 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.88389 * 300.46074 * 10 9 7 27 27 H 1.09003 * 109.87977 * 61.62415 * 10 9 7 28 28 H 1.08999 * 110.71849 * 140.55494 * 11 10 9 29 29 H 1.08995 * 110.72403 * 263.65428 * 11 10 9 30 30 H 1.09000 * 109.47463 * 299.99615 * 15 14 12 31 31 H 1.08997 * 109.47075 * 60.00654 * 15 14 12 32 32 H 1.07992 * 120.41700 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.78622 * 180.25892 * 18 17 16 34 34 H 1.08005 * 120.42370 * 179.75287 * 19 18 17 35 35 H 1.09001 * 109.46809 * 29.97471 * 21 20 19 36 36 H 1.08996 * 109.46844 * 149.97607 * 21 20 19 37 37 H 1.08998 * 110.36718 * 274.73193 * 24 9 7 38 38 H 1.09005 * 110.36600 * 37.05754 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 0.0261 12 6 0.8518 -4.6562 0.6108 13 1 0.8567 -4.5964 1.6992 14 8 1.0247 -6.0055 0.1732 15 6 1.8456 -6.7956 1.0357 16 6 1.9594 -8.1920 0.4805 17 6 1.3062 -8.5155 -0.6940 18 6 1.4223 -9.8011 -1.1994 19 6 2.1851 -10.7206 -0.4954 20 6 2.8043 -10.3262 0.6753 21 6 3.6351 -11.3173 1.4489 22 35 2.4963 -12.2534 2.7496 23 7 2.6761 -9.0926 1.1238 24 6 1.9334 -3.7312 -0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5576 -2.0522 0.8830 27 1 -0.5544 -2.0845 -0.9025 28 1 -1.2985 -4.2515 0.6761 29 1 -0.6348 -4.4174 -0.9809 30 1 2.8379 -6.3494 1.1020 31 1 1.3976 -6.8344 2.0286 32 1 0.7165 -7.7748 -1.2135 33 1 0.9266 -10.0812 -2.1171 34 1 2.2941 -11.7323 -0.8575 35 1 4.0712 -12.0413 0.7606 36 1 4.4314 -10.7912 1.9755 37 1 2.1666 -4.0420 -1.0189 38 1 2.8328 -3.7405 0.6153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222722195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:45 Heat of formation + Delta-G solvation = -0.566630 kcal Electronic energy + Delta-G solvation = -20693.363203 eV Core-core repulsion = 17389.158569 eV Total energy + Delta-G solvation = -3304.204634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38625 -39.85956 -37.65427 -34.70925 -34.07029 -33.59393 -31.55620 -30.99367 -29.10647 -28.12649 -27.15588 -26.22488 -23.43090 -22.74735 -22.00271 -21.80612 -18.99795 -18.07379 -17.58099 -17.23823 -16.70160 -16.55940 -16.28833 -15.86526 -15.41368 -15.15149 -14.92828 -14.36005 -14.18023 -13.96356 -13.87874 -13.69768 -13.38078 -13.03714 -12.92370 -12.72726 -12.65279 -12.32544 -12.07994 -12.04845 -11.78382 -11.45572 -11.03357 -10.90941 -10.80838 -10.71602 -10.57956 -10.45866 -9.76901 -8.93410 -7.86425 -5.23213 -0.15020 0.22619 0.95754 1.46125 1.49669 1.55997 2.21498 2.50624 2.77407 3.17348 3.32331 3.54015 3.76000 3.76727 3.84454 4.04271 4.06502 4.17290 4.22772 4.32677 4.34034 4.43892 4.44384 4.62125 4.67182 4.73312 4.78762 4.94478 5.00090 5.05293 5.19540 5.25754 5.42821 5.62978 5.68058 5.72682 6.12633 6.24137 6.89527 7.07969 7.73990 8.38112 9.23830 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.001990 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.673305 B =14067.978169 C =14322.875836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.186 3.814 11 C -0.122 4.122 12 C 0.094 3.906 13 H 0.079 0.921 14 O -0.374 6.374 15 C 0.112 3.888 16 C 0.117 3.883 17 C -0.154 4.154 18 C -0.071 4.071 19 C -0.153 4.153 20 C 0.105 3.895 21 C -0.020 4.020 22 Br -0.158 7.158 23 N -0.492 5.492 24 C 0.114 3.886 25 H 0.249 0.751 26 H 0.019 0.981 27 H 0.012 0.988 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.025 0.975 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -29.886 1.395 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.061 3.939 11 C -0.160 4.160 12 C 0.035 3.965 13 H 0.097 0.903 14 O -0.292 6.292 15 C 0.035 3.965 16 C -0.021 4.021 17 C -0.174 4.174 18 C -0.097 4.097 19 C -0.173 4.173 20 C -0.034 4.034 21 C -0.135 4.135 22 Br -0.078 7.078 23 N -0.204 5.204 24 C -0.012 4.012 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.043 0.957 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.947 -29.841 2.452 30.347 hybrid contribution 0.172 1.472 -0.793 1.680 sum 5.119 -28.369 1.660 28.875 Atomic orbital electron populations 1.70162 1.06299 1.25547 1.57966 1.25691 0.96690 1.01103 1.02344 0.85114 0.77140 0.78556 0.78276 1.20313 1.21885 1.20145 1.19425 0.91031 0.83584 1.43538 0.89989 1.44644 1.02590 1.00868 1.87260 1.20931 0.83700 0.91003 0.98302 1.22795 0.96518 0.94759 1.01970 1.23092 0.95471 0.79972 0.97959 0.90263 1.87772 1.69919 1.21590 1.49963 1.20960 0.95623 0.86831 0.93065 1.20781 0.94051 0.94262 0.92982 1.22140 1.00105 0.98485 0.96651 1.21995 0.95673 0.91899 1.00098 1.22258 0.97531 1.02339 0.95218 1.20980 0.97543 0.90870 0.93963 1.23593 0.95618 0.97618 0.96655 1.97453 1.71331 1.77931 1.61135 1.66878 1.17319 1.02450 1.33740 1.22077 0.95737 0.85382 0.97988 0.94218 0.96307 0.97021 0.89276 0.90556 0.91075 0.90473 0.83861 0.81496 0.81325 0.83266 0.86242 0.95747 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.54 10.31 21.65 0.22 -57.32 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.25 -14.07 10.28 84.04 0.86 -13.21 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.89 3.39 -692.02 -2.35 -35.24 16 10 C 0.19 9.27 5.37 86.73 0.47 9.74 16 11 C -0.12 -4.55 6.69 31.78 0.21 -4.33 16 12 C 0.09 3.27 3.49 31.98 0.11 3.38 16 13 H 0.08 2.64 7.90 -2.39 -0.02 2.63 16 14 O -0.37 -11.34 8.61 -148.98 -1.28 -12.63 16 15 C 0.11 2.97 6.36 71.24 0.45 3.42 16 16 C 0.12 2.91 6.78 42.55 0.29 3.20 16 17 C -0.15 -3.37 9.41 22.36 0.21 -3.16 16 18 C -0.07 -1.12 10.18 22.47 0.23 -0.89 16 19 C -0.15 -2.14 9.74 22.36 0.22 -1.93 16 20 C 0.11 1.87 6.09 42.54 0.26 2.13 16 21 C -0.02 -0.24 6.89 71.24 0.49 0.25 16 22 Br -0.16 -2.56 33.92 -20.37 -0.69 -3.25 16 23 N -0.49 -11.74 10.19 -172.07 -1.75 -13.49 16 24 C 0.11 4.80 6.97 86.85 0.61 5.40 16 25 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.02 1.03 7.38 -2.39 -0.02 1.01 16 27 H 0.01 0.65 7.51 -2.39 -0.02 0.63 16 28 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 1.93 8.11 -2.39 -0.02 1.92 16 32 H 0.14 3.27 7.00 -2.91 -0.02 3.25 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.15 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -69.02 338.11 2.10 -66.92 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.05 Total: 6.30 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.87 Total: 0.72 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.88 Total: -106.05 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.28 Total: -12.63 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 35 Polarization: -2.56 SS G_CDS: -0.69 Total: -3.25 kcal Total: -69.02 2.10 -66.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222722195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.352 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds