Wall clock time and date at job start Sat Apr 11 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00263 * 3 2 1 5 5 H 1.48500 * 109.47294 * 30.00103 * 3 2 1 6 6 H 1.48502 * 109.47644 * 150.00171 * 3 2 1 7 7 C 1.38992 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36955 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99717 * 179.97438 * 9 7 2 11 11 O 1.21624 * 120.00286 * 0.02562 * 10 9 7 12 12 C 1.47444 * 119.99848 * 179.97438 * 10 9 7 13 13 C 1.36672 * 125.77882 * 180.02562 * 12 10 9 14 14 N 1.34840 * 106.82391 * 180.02562 * 13 12 10 15 15 C 1.46497 * 126.58714 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47212 * 124.99902 * 15 14 13 17 17 C 1.38241 * 119.99300 * 99.99181 * 16 15 14 18 18 C 1.38205 * 120.02377 * 179.70221 * 17 16 15 19 19 C 1.38374 * 120.01574 * 0.28236 * 18 17 16 20 20 Cl 1.73598 * 120.00996 * 179.97438 * 19 18 17 21 21 C 1.38316 * 119.98666 * 359.97438 * 19 18 17 22 22 C 1.38340 * 119.99588 * 280.25342 * 16 15 14 23 23 Cl 1.73601 * 120.00358 * 359.97438 * 22 16 15 24 24 N 1.40201 * 106.81733 * 0.22420 * 14 13 12 25 25 N 1.28768 * 108.38623 * 359.61636 * 24 14 13 26 26 H 0.96993 * 120.00705 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99943 * 0.02562 * 9 7 2 28 28 H 1.07996 * 126.58657 * 0.02562 * 13 12 10 29 29 H 1.08999 * 109.47742 * 4.99989 * 15 14 13 30 30 H 1.09004 * 109.47242 * 244.99425 * 15 14 13 31 31 H 1.08002 * 119.99029 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.98851 * 180.30234 * 18 17 16 33 33 H 1.08002 * 120.01193 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4403 0.7000 7 6 2.0090 -1.2037 -0.0005 8 1 3.0890 -1.2036 -0.0010 9 7 1.3243 -2.3898 -0.0005 10 6 1.9982 -3.5569 -0.0016 11 8 3.2144 -3.5568 -0.0021 12 6 1.2611 -4.8338 -0.0010 13 6 1.8218 -6.0802 -0.0014 14 7 0.8049 -6.9657 -0.0012 15 6 0.9189 -8.4262 -0.0021 16 6 0.1462 -8.9910 1.1620 17 6 -1.1167 -9.5169 0.9633 18 6 -1.8233 -10.0407 2.0293 19 6 -1.2694 -10.0336 3.2973 20 17 -2.1573 -10.6910 4.6364 21 6 -0.0080 -9.5027 3.4977 22 6 0.6987 -8.9782 2.4303 23 17 2.2822 -8.3121 2.6807 24 7 -0.3823 -6.2199 -0.0059 25 7 -0.0763 -4.9691 -0.0005 26 1 -0.4851 0.8399 0.0004 27 1 0.3543 -2.3898 -0.0005 28 1 2.8767 -6.3114 -0.0019 29 1 1.9678 -8.7089 0.0866 30 1 0.5134 -8.8218 -0.9334 31 1 -1.5495 -9.5225 -0.0262 32 1 -2.8079 -10.4559 1.8725 33 1 0.4246 -9.4967 4.4873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292650187.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:08 Heat of formation + Delta-G solvation = 72.606516 kcal Electronic energy + Delta-G solvation = -23209.580533 eV Core-core repulsion = 19324.312337 eV Total energy + Delta-G solvation = -3885.268196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69854 -40.01502 -37.79892 -37.24383 -36.74081 -34.90766 -33.98057 -31.75325 -31.37183 -31.18061 -30.08760 -27.13634 -25.18105 -23.53815 -22.85917 -22.42979 -21.36500 -19.51403 -18.08078 -17.83586 -17.15410 -16.67834 -16.18598 -15.48910 -15.31443 -14.73913 -14.56571 -14.44385 -14.20211 -14.11422 -13.75698 -13.50916 -13.02503 -12.73464 -12.70759 -12.46507 -12.15331 -11.64581 -11.58497 -11.52042 -11.43452 -11.29762 -11.09937 -10.75845 -10.39121 -10.21852 -10.06788 -9.56564 -9.45746 -9.20076 -8.67405 -8.60960 -7.99245 -6.45243 -3.81917 0.32980 0.59929 1.37905 1.55959 1.82887 2.29363 2.47817 3.01874 3.22730 3.26609 3.32692 3.90278 4.06845 4.15205 4.33578 4.36292 4.49779 4.68885 4.76296 4.81028 4.96036 4.96724 5.17536 5.36033 5.37301 5.46751 5.58368 5.61527 5.78853 5.91620 6.01120 6.63664 6.68324 7.51429 8.01882 8.41936 8.63084 9.12462 9.53560 10.04665 10.71122 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002504 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.279539 B =11179.129601 C =11489.980722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.300 4.300 8 H 0.108 0.892 9 N -0.530 5.530 10 C 0.505 3.495 11 O -0.600 6.600 12 C -0.056 4.056 13 C 0.070 3.930 14 N -0.369 5.369 15 C 0.167 3.833 16 C -0.099 4.099 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.014 4.014 20 Cl -0.056 7.056 21 C -0.106 4.106 22 C -0.006 4.006 23 Cl -0.043 7.043 24 N -0.077 5.077 25 N -0.210 5.210 26 H 0.275 0.725 27 H 0.402 0.598 28 H 0.195 0.805 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -24.968 4.224 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.126 0.874 9 N -0.163 5.163 10 C 0.289 3.711 11 O -0.487 6.487 12 C -0.195 4.195 13 C -0.085 4.085 14 N -0.156 5.156 15 C 0.045 3.955 16 C -0.101 4.101 17 C -0.079 4.079 18 C -0.127 4.127 19 C -0.041 4.041 20 Cl -0.027 7.027 21 C -0.125 4.125 22 C -0.034 4.034 23 Cl -0.014 7.014 24 N -0.057 5.057 25 N -0.083 5.083 26 H 0.085 0.915 27 H 0.237 0.763 28 H 0.212 0.788 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.767 -24.851 4.361 25.511 hybrid contribution 0.905 0.667 0.260 1.154 sum -2.862 -24.184 4.620 24.787 Atomic orbital electron populations 1.69647 1.06087 1.28594 1.48056 1.25399 0.95659 1.00045 0.96764 0.85796 0.79263 0.80361 0.78517 1.20200 1.20771 1.19194 1.19814 0.93616 0.82029 1.47530 0.87431 1.41773 1.10048 1.04204 1.60255 1.16356 0.86400 0.81540 0.86776 1.90613 1.12532 1.86478 1.59046 1.22030 0.89148 0.96002 1.12356 1.23161 0.95559 0.88894 1.00858 1.50239 1.06514 1.06801 1.52094 1.20670 1.02317 0.75034 0.97435 1.19738 0.96121 1.01068 0.93131 1.21024 0.91940 0.95073 0.99889 1.21174 1.00985 1.00033 0.90460 1.20840 0.93195 1.00345 0.89720 1.98401 1.74771 1.84087 1.45401 1.20900 0.93250 0.98919 0.99451 1.20731 0.89182 0.99578 0.93898 1.98432 1.22558 1.83623 1.96794 1.81867 1.03824 0.96457 1.23515 1.74694 1.13594 1.09558 1.10465 0.91489 0.76295 0.78800 0.86734 0.87287 0.83447 0.83808 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.53 9.68 -14.98 -0.15 -8.68 16 8 H 0.11 3.13 7.15 -52.48 -0.38 2.75 16 9 N -0.53 -14.45 5.28 -11.94 -0.06 -14.52 16 10 C 0.50 12.90 7.77 -12.51 -0.10 12.80 16 11 O -0.60 -16.56 16.44 5.26 0.09 -16.48 16 12 C -0.06 -1.19 6.99 -83.55 -0.58 -1.78 16 13 C 0.07 1.14 11.28 -16.80 -0.19 0.96 16 14 N -0.37 -5.14 3.68 -62.22 -0.23 -5.37 16 15 C 0.17 1.47 6.07 -5.19 -0.03 1.43 16 16 C -0.10 -0.89 5.34 -104.58 -0.56 -1.45 16 17 C -0.06 -0.46 9.67 -39.59 -0.38 -0.84 16 18 C -0.11 -0.80 9.83 -39.54 -0.39 -1.19 16 19 C -0.01 -0.12 6.32 -39.50 -0.25 -0.37 16 20 Cl -0.06 -0.45 28.96 -51.86 -1.50 -1.95 16 21 C -0.11 -0.97 9.62 -39.51 -0.38 -1.35 16 22 C -0.01 -0.06 6.31 -39.50 -0.25 -0.31 16 23 Cl -0.04 -0.46 27.52 -51.86 -1.43 -1.89 16 24 N -0.08 -1.35 13.64 60.35 0.82 -0.53 16 25 N -0.21 -4.39 12.04 32.84 0.40 -3.99 16 26 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.40 10.97 7.58 -40.82 -0.31 10.66 16 28 H 0.20 2.68 8.06 -52.49 -0.42 2.25 16 29 H 0.11 0.78 7.31 -51.93 -0.38 0.40 16 30 H 0.11 0.67 8.00 -51.93 -0.42 0.26 16 31 H 0.15 0.81 8.04 -52.49 -0.42 0.39 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -33.40 336.40 -6.80 -40.20 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.30 Total: 7.59 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.35 Total: -0.18 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.65 Total: -48.34 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.93 Total: -3.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.40 -6.80 -40.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650187.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.808 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds