Wall clock time and date at job start Sat Apr 11 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00263 * 3 2 1 5 5 H 1.48500 * 109.47294 * 30.00103 * 3 2 1 6 6 H 1.48502 * 109.47644 * 150.00171 * 3 2 1 7 7 C 1.38992 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36955 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99717 * 179.97438 * 9 7 2 11 11 O 1.21624 * 120.00286 * 0.02562 * 10 9 7 12 12 C 1.47444 * 119.99848 * 179.97438 * 10 9 7 13 13 C 1.36672 * 125.77882 * 180.02562 * 12 10 9 14 14 N 1.34840 * 106.82391 * 180.02562 * 13 12 10 15 15 C 1.46497 * 126.58714 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47212 * 124.99902 * 15 14 13 17 17 C 1.38241 * 119.99300 * 99.99181 * 16 15 14 18 18 C 1.38205 * 120.02377 * 179.70221 * 17 16 15 19 19 C 1.38374 * 120.01574 * 0.28236 * 18 17 16 20 20 Cl 1.73598 * 120.00996 * 179.97438 * 19 18 17 21 21 C 1.38316 * 119.98666 * 359.97438 * 19 18 17 22 22 C 1.38340 * 119.99588 * 280.25342 * 16 15 14 23 23 Cl 1.73601 * 120.00358 * 359.97438 * 22 16 15 24 24 N 1.40201 * 106.81733 * 0.22420 * 14 13 12 25 25 N 1.28768 * 108.38623 * 359.61636 * 24 14 13 26 26 H 0.96993 * 120.00705 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99943 * 0.02562 * 9 7 2 28 28 H 1.07996 * 126.58657 * 0.02562 * 13 12 10 29 29 H 1.08999 * 109.47742 * 4.99989 * 15 14 13 30 30 H 1.09004 * 109.47242 * 244.99425 * 15 14 13 31 31 H 1.08002 * 119.99029 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.98851 * 180.30234 * 18 17 16 33 33 H 1.08002 * 120.01193 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4403 0.7000 7 6 2.0090 -1.2037 -0.0005 8 1 3.0890 -1.2036 -0.0010 9 7 1.3243 -2.3898 -0.0005 10 6 1.9982 -3.5569 -0.0016 11 8 3.2144 -3.5568 -0.0021 12 6 1.2611 -4.8338 -0.0010 13 6 1.8218 -6.0802 -0.0014 14 7 0.8049 -6.9657 -0.0012 15 6 0.9189 -8.4262 -0.0021 16 6 0.1462 -8.9910 1.1620 17 6 -1.1167 -9.5169 0.9633 18 6 -1.8233 -10.0407 2.0293 19 6 -1.2694 -10.0336 3.2973 20 17 -2.1573 -10.6910 4.6364 21 6 -0.0080 -9.5027 3.4977 22 6 0.6987 -8.9782 2.4303 23 17 2.2822 -8.3121 2.6807 24 7 -0.3823 -6.2199 -0.0059 25 7 -0.0763 -4.9691 -0.0005 26 1 -0.4851 0.8399 0.0004 27 1 0.3543 -2.3898 -0.0005 28 1 2.8767 -6.3114 -0.0019 29 1 1.9678 -8.7089 0.0866 30 1 0.5134 -8.8218 -0.9334 31 1 -1.5495 -9.5225 -0.0262 32 1 -2.8079 -10.4559 1.8725 33 1 0.4246 -9.4967 4.4873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292650187.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:08 Heat of formation + Delta-G solvation = 50.498611 kcal Electronic energy + Delta-G solvation = -23210.539204 eV Core-core repulsion = 19324.312337 eV Total energy + Delta-G solvation = -3886.226867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.08678 -40.71067 -39.78683 -37.94343 -37.45944 -36.06869 -35.92687 -33.34503 -32.62950 -32.02584 -31.54188 -28.12789 -27.08548 -24.34679 -24.05313 -23.72271 -22.44467 -21.15096 -20.05481 -18.89466 -18.33421 -17.45974 -17.16693 -16.97832 -16.59070 -16.33867 -15.98037 -15.50176 -15.43287 -15.07825 -14.98146 -14.77369 -14.65212 -13.98121 -13.54225 -13.43527 -13.29204 -13.11127 -12.92363 -12.74055 -12.46092 -12.23497 -12.19018 -12.09834 -12.05524 -11.98662 -11.55912 -11.29583 -10.66690 -10.23026 -10.10895 -10.04602 -9.85189 -8.49926 -5.98099 -0.37173 -0.04217 0.25367 0.69741 0.83081 1.13016 1.23565 1.43443 1.47494 1.58282 2.29147 2.32969 2.45016 2.98727 3.24832 3.28627 3.45219 3.46630 3.71058 3.87850 4.02377 4.06295 4.15149 4.21201 4.34966 4.48091 4.59399 4.72954 4.90634 4.98124 5.10192 5.38308 5.41341 5.49758 5.93538 6.48997 6.98424 7.07690 7.48982 7.99486 8.67531 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002504 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.279539 B =11179.129601 C =11489.980722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.014 4.014 3 Si 1.004 2.996 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.338 4.338 8 H 0.092 0.908 9 N -0.547 5.547 10 C 0.510 3.490 11 O -0.626 6.626 12 C -0.097 4.097 13 C 0.101 3.899 14 N -0.344 5.344 15 C 0.154 3.846 16 C -0.109 4.109 17 C -0.056 4.056 18 C -0.106 4.106 19 C -0.020 4.020 20 Cl -0.054 7.054 21 C -0.117 4.117 22 C -0.019 4.019 23 Cl -0.057 7.057 24 N -0.075 5.075 25 N -0.240 5.240 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.223 0.777 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -26.693 3.698 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.826 3.174 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.110 0.890 9 N -0.180 5.180 10 C 0.296 3.704 11 O -0.514 6.514 12 C -0.236 4.236 13 C -0.056 4.056 14 N -0.130 5.130 15 C 0.035 3.965 16 C -0.111 4.111 17 C -0.075 4.075 18 C -0.125 4.125 19 C -0.047 4.047 20 Cl -0.025 7.025 21 C -0.136 4.136 22 C -0.047 4.047 23 Cl -0.028 7.028 24 N -0.055 5.055 25 N -0.114 5.114 26 H 0.091 0.909 27 H 0.233 0.767 28 H 0.239 0.761 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.083 -26.631 3.836 27.214 hybrid contribution 0.940 0.877 0.462 1.366 sum -3.143 -25.755 4.297 26.299 Atomic orbital electron populations 1.69729 1.07358 1.29800 1.48496 1.26305 0.96555 1.03061 0.95533 0.84783 0.77901 0.75825 0.78925 1.19203 1.19510 1.19073 1.19873 0.93204 0.83426 1.50206 0.89025 1.41838 1.09767 1.04680 1.61748 1.16931 0.86367 0.82595 0.84508 1.90566 1.13808 1.87381 1.59687 1.21535 0.89766 0.95546 1.16766 1.23432 0.96897 0.87616 0.97632 1.50551 1.04809 1.08549 1.49098 1.21312 1.04444 0.71494 0.99227 1.19825 0.96819 1.01810 0.92684 1.21368 0.91148 0.93874 1.01096 1.21493 1.01818 0.99277 0.89878 1.20994 0.93089 1.00309 0.90339 1.98403 1.74616 1.84018 1.45482 1.21008 0.93697 0.99250 0.99652 1.20877 0.88870 1.00293 0.94633 1.98426 1.23551 1.83917 1.96892 1.81745 1.05066 0.95603 1.23082 1.74665 1.13695 1.11279 1.11723 0.90931 0.76726 0.76072 0.84329 0.83557 0.80883 0.81628 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.88 13.05 21.67 0.28 -51.60 16 2 C -0.01 -0.75 5.50 84.94 0.47 -0.29 16 3 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.34 -19.89 9.68 84.07 0.81 -19.08 16 8 H 0.09 5.55 7.15 -2.91 -0.02 5.53 16 9 N -0.55 -31.03 5.28 -309.95 -1.64 -32.67 16 10 C 0.51 26.77 7.77 86.67 0.67 27.44 16 11 O -0.63 -35.34 16.44 -4.11 -0.07 -35.41 16 12 C -0.10 -4.09 6.99 40.81 0.29 -3.81 16 13 C 0.10 3.12 11.28 83.86 0.95 4.07 16 14 N -0.34 -8.67 3.68 -350.75 -1.29 -9.96 16 15 C 0.15 2.12 6.07 85.63 0.52 2.64 16 16 C -0.11 -1.66 5.34 -19.84 -0.11 -1.77 16 17 C -0.06 -0.66 9.67 22.26 0.22 -0.45 16 18 C -0.11 -1.28 9.83 22.29 0.22 -1.06 16 19 C -0.02 -0.30 6.32 22.32 0.14 -0.16 16 20 Cl -0.05 -0.80 28.96 -2.72 -0.08 -0.88 16 21 C -0.12 -1.98 9.62 22.31 0.21 -1.77 16 22 C -0.02 -0.34 6.31 22.32 0.14 -0.20 16 23 Cl -0.06 -1.13 27.52 -2.72 -0.07 -1.21 16 24 N -0.08 -2.51 13.64 37.02 0.50 -2.00 16 25 N -0.24 -10.05 12.04 -50.00 -0.60 -10.65 16 26 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.40 22.72 7.58 -92.71 -0.70 22.01 16 28 H 0.22 5.52 8.06 -2.91 -0.02 5.50 16 29 H 0.14 1.33 7.31 -2.39 -0.02 1.31 16 30 H 0.15 1.06 8.00 -2.39 -0.02 1.04 16 31 H 0.17 1.11 8.04 -2.91 -0.02 1.09 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.91 336.40 4.09 -70.82 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.50 Total: 22.59 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.53 Total: 5.57 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -2.74 Total: -106.87 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.07 Total: -35.41 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.15 Total: -2.08 kcal Total: -74.91 4.09 -70.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650187.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.316 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds