Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47159 * 239.99475 * 3 2 1 5 5 H 1.48498 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46898 * 119.99821 * 3 2 1 7 7 C 1.38649 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99740 * 179.97438 * 7 2 1 9 9 O 1.34793 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00399 * 174.96110 * 9 7 2 11 11 C 1.38939 * 119.98999 * 5.34729 * 10 9 7 12 12 C 1.37969 * 120.00752 * 180.02562 * 11 10 9 13 13 C 1.38997 * 119.99486 * 0.02562 * 12 11 10 14 14 N 1.39734 * 120.00939 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00043 * 35.13525 * 14 13 12 16 16 O 1.21379 * 120.00185 * 355.50078 * 15 14 13 17 17 C 1.49319 * 119.99631 * 175.50116 * 15 14 13 18 18 O 1.21362 * 120.00596 * 359.97438 * 17 15 14 19 19 N 1.34783 * 119.99972 * 180.02562 * 17 15 14 20 20 O 1.41596 * 120.00387 * 179.97438 * 19 17 15 21 21 C 1.42898 * 114.00135 * 180.02562 * 20 19 17 22 22 C 1.50704 * 109.47009 * 180.02562 * 21 20 19 23 23 C 1.31156 * 119.99792 * 135.27817 * 22 21 20 24 24 Cl 1.73601 * 120.00477 * 359.71793 * 23 22 21 25 25 C 1.38997 * 119.98344 * 0.24875 * 13 12 11 26 26 C 1.37971 * 119.99207 * 359.49416 * 25 13 12 27 27 H 0.96998 * 120.00010 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99820 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.00060 * 179.97438 * 12 11 10 30 30 H 0.97006 * 119.99835 * 215.14736 * 14 13 12 31 31 H 0.97006 * 119.99250 * 359.97438 * 19 17 15 32 32 H 1.08996 * 109.47182 * 59.99971 * 21 20 19 33 33 H 1.09003 * 109.47198 * 299.99985 * 21 20 19 34 34 H 1.08000 * 119.99907 * 314.99730 * 22 21 20 35 35 H 1.08000 * 119.99548 * 179.72374 * 23 22 21 36 36 H 1.07996 * 120.00579 * 179.75153 * 25 13 12 37 37 H 1.08003 * 119.99775 * 180.23434 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1035 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0702 -3.5044 -0.1052 11 6 3.4579 -3.4370 -0.0951 12 6 4.2056 -4.5915 -0.2030 13 6 3.5704 -5.8221 -0.3224 14 7 4.3273 -6.9915 -0.4322 15 6 5.4930 -7.1050 0.2348 16 8 5.9258 -6.1623 0.8652 17 6 6.2520 -8.3904 0.1983 18 8 5.8191 -9.3331 -0.4316 19 7 7.4174 -8.5041 0.8657 20 8 8.1369 -9.7231 0.8316 21 6 9.3524 -9.7019 1.5827 22 6 10.0322 -11.0426 1.4762 23 6 11.3229 -11.1075 1.2527 24 17 12.2471 -9.6490 1.0724 25 6 2.1821 -5.8886 -0.3382 26 6 1.4350 -4.7342 -0.2249 27 1 -0.4850 0.8400 -0.0004 28 1 3.9515 -2.4808 -0.0027 29 1 5.2843 -4.5390 -0.1955 30 1 4.0139 -7.7216 -0.9888 31 1 7.7632 -7.7506 1.3695 32 1 9.1297 -9.4890 2.6282 33 1 10.0107 -8.9286 1.1867 34 1 9.4573 -11.9500 1.5883 35 1 11.8108 -12.0683 1.1808 36 1 1.6883 -6.8441 -0.4350 37 1 0.3563 -4.7862 -0.2334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324186812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = -55.956645 kcal Electronic energy + Delta-G solvation = -24963.694258 eV Core-core repulsion = 20735.682324 eV Total energy + Delta-G solvation = -4228.011934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10283 -40.78391 -39.92855 -38.83038 -38.24620 -37.72553 -35.69651 -34.85889 -34.16977 -32.95095 -31.89311 -29.94355 -27.57729 -27.23131 -25.78167 -23.97256 -22.98774 -21.79630 -21.07604 -20.35010 -19.84500 -19.33550 -18.70618 -18.08650 -17.74287 -17.37628 -17.05741 -16.48993 -16.25049 -16.02155 -15.75549 -15.49893 -15.27942 -15.23500 -14.73576 -14.66590 -14.43305 -14.17579 -13.57910 -13.52109 -13.40895 -13.26948 -12.92345 -12.80779 -12.68937 -12.50741 -12.43271 -12.14295 -11.65747 -11.47414 -11.17065 -10.84584 -10.59632 -10.40491 -10.14581 -9.86199 -8.70596 -8.46227 -6.12929 -0.03605 0.08982 0.52959 0.69289 0.84961 1.28064 1.37238 1.46956 1.52733 1.94254 2.01505 2.19071 2.80102 3.05395 3.15838 3.36868 3.50389 3.68278 3.99863 4.07448 4.10185 4.17446 4.46731 4.52949 4.56561 4.64556 4.99924 5.05347 5.07107 5.07508 5.26469 5.33079 5.35385 5.48983 5.62560 5.67951 6.01869 6.05557 6.19524 6.64855 6.80051 6.98406 7.76496 8.75903 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.001773 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.855220 B =15784.915834 C =17085.885416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.224 6.224 10 C 0.114 3.886 11 C -0.228 4.228 12 C -0.066 4.066 13 C 0.048 3.952 14 N -0.611 5.611 15 C 0.520 3.480 16 O -0.522 6.522 17 C 0.532 3.468 18 O -0.524 6.524 19 N -0.559 5.559 20 O -0.147 6.147 21 C 0.041 3.959 22 C -0.147 4.147 23 C -0.079 4.079 24 Cl -0.104 7.104 25 C -0.068 4.068 26 C -0.180 4.180 27 H 0.273 0.727 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.431 0.569 31 H 0.432 0.568 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.165 0.835 35 H 0.188 0.812 36 H 0.166 0.834 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.900 -22.311 2.736 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.130 6.130 10 C 0.062 3.938 11 C -0.248 4.248 12 C -0.086 4.086 13 C -0.045 4.045 14 N -0.259 5.259 15 C 0.301 3.699 16 O -0.398 6.398 17 C 0.313 3.687 18 O -0.399 6.399 19 N -0.262 5.262 20 O -0.151 6.151 21 C -0.036 4.036 22 C -0.167 4.167 23 C -0.123 4.123 24 Cl -0.076 7.076 25 C -0.087 4.087 26 C -0.200 4.200 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.271 0.729 31 H 0.277 0.723 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.205 0.795 36 H 0.183 0.817 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.533 -22.226 2.650 31.059 hybrid contribution 0.408 1.041 0.193 1.135 sum 21.941 -21.184 2.844 30.631 Atomic orbital electron populations 1.70167 1.07894 1.28898 1.48419 1.26539 0.96837 1.02617 0.95807 0.84684 0.77434 0.74472 0.79883 1.18226 1.19609 1.18310 1.21764 0.92530 0.81422 1.53293 0.88120 1.83932 1.35739 1.12485 1.80853 1.19994 0.91264 0.88293 0.94204 1.21112 0.93117 0.99476 1.11100 1.20960 1.00216 0.90227 0.97194 1.17311 0.90433 0.84977 1.11810 1.42643 1.19756 1.17639 1.45832 1.19598 0.82619 0.87269 0.80432 1.90807 1.67455 1.39477 1.42092 1.19745 0.80542 0.88276 0.80115 1.90793 1.67662 1.39654 1.41760 1.46890 1.19470 1.07778 1.52040 1.90598 1.36118 1.14992 1.73432 1.22457 0.84697 0.98435 0.97969 1.22816 0.94504 0.98248 1.01090 1.25025 0.93343 0.92181 1.01756 1.98396 1.74503 1.38952 1.95759 1.20781 0.90876 0.98522 0.98555 1.20305 1.00441 0.89515 1.09711 0.91791 0.85923 0.84596 0.72876 0.72345 0.88402 0.89932 0.81814 0.79533 0.81672 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.24 13.67 21.61 0.30 -54.94 16 2 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 3 Si 1.02 42.39 29.55 68.60 2.03 44.41 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.41 -23.71 9.48 67.92 0.64 -23.07 16 8 H 0.10 5.31 5.19 -2.91 -0.02 5.30 16 9 O -0.22 -13.11 9.75 -22.41 -0.22 -13.33 16 10 C 0.11 5.47 6.65 22.61 0.15 5.62 16 11 C -0.23 -9.96 9.16 22.37 0.20 -9.75 16 12 C -0.07 -2.43 8.68 22.39 0.19 -2.23 16 13 C 0.05 1.49 6.30 38.25 0.24 1.74 16 14 N -0.61 -15.11 5.32 -304.75 -1.62 -16.73 16 15 C 0.52 13.14 7.73 87.23 0.67 13.82 16 16 O -0.52 -15.33 13.91 -3.34 -0.05 -15.38 16 17 C 0.53 12.42 8.03 87.23 0.70 13.12 16 18 O -0.52 -14.50 16.89 14.10 0.24 -14.27 16 19 N -0.56 -10.57 6.38 -174.59 -1.11 -11.68 16 20 O -0.15 -2.70 11.09 -21.39 -0.24 -2.94 16 21 C 0.04 0.45 6.42 71.24 0.46 0.90 16 22 C -0.15 -1.12 9.90 25.49 0.25 -0.86 16 23 C -0.08 -0.50 10.82 67.63 0.73 0.23 16 24 Cl -0.10 -1.12 27.03 -2.72 -0.07 -1.19 16 25 C -0.07 -2.08 9.96 22.39 0.22 -1.85 16 26 C -0.18 -7.09 9.98 22.37 0.22 -6.87 16 27 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.12 5.47 5.63 -2.91 -0.02 5.46 16 29 H 0.14 4.72 6.22 -2.91 -0.02 4.70 16 30 H 0.43 8.45 8.30 -92.70 -0.77 7.68 16 31 H 0.43 6.33 8.01 -92.70 -0.74 5.59 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.92 6.19 -2.39 -0.01 0.90 16 34 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -75.03 351.75 4.07 -70.95 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.34 Total: 24.94 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.16 Total: -9.86 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.44 Total: -83.35 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.26 Total: -45.92 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -75.03 4.07 -70.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324186812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.996 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds