Wall clock time and date at job start Sat Apr 11 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47465 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00332 * 2 1 3 5 5 H 1.08003 * 119.99567 * 119.99940 * 4 2 1 6 6 C 1.37872 * 120.00007 * 299.99779 * 4 2 1 7 7 N 1.31518 * 119.99757 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46927 * 89.99821 * 8 6 4 10 10 H 1.48494 * 109.47185 * 209.99539 * 8 6 4 11 11 H 1.48494 * 109.46891 * 329.99949 * 8 6 4 12 12 C 1.50707 * 109.47056 * 240.00536 * 2 1 3 13 13 O 1.21273 * 119.99798 * 240.00062 * 12 2 1 14 14 N 1.34777 * 119.99732 * 59.99401 * 12 2 1 15 15 N 1.40101 * 119.99870 * 180.02562 * 14 12 2 16 16 C 1.34773 * 120.00240 * 180.02562 * 15 14 12 17 17 O 1.21563 * 119.99913 * 359.97438 * 16 15 14 18 18 C 1.47799 * 120.00275 * 179.72241 * 16 15 14 19 19 C 1.39609 * 120.12879 * 0.02562 * 18 16 15 20 20 C 1.37912 * 119.85833 * 179.76100 * 19 18 16 21 21 C 1.38477 * 120.13753 * 0.48867 * 20 19 18 22 22 Br 1.89100 * 119.86649 * 179.74021 * 21 20 19 23 23 C 1.38480 * 120.27062 * 359.76650 * 21 20 19 24 24 C 1.37911 * 120.13201 * 359.97438 * 23 21 20 25 25 H 1.09003 * 109.46864 * 299.99630 * 1 2 3 26 26 H 1.09001 * 109.47749 * 59.99626 * 1 2 3 27 27 H 1.09003 * 109.47465 * 180.02562 * 1 2 3 28 28 H 0.97008 * 119.99511 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 30 30 H 0.97000 * 119.99648 * 359.97438 * 15 14 12 31 31 H 1.07996 * 120.07595 * 0.02562 * 19 18 16 32 32 H 1.07997 * 119.93301 * 180.22862 * 20 19 18 33 33 H 1.07996 * 119.93744 * 179.97438 * 23 21 20 34 34 H 1.07997 * 120.06991 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 2.1375 -0.8598 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1763 1.4922 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1194 14 7 1.7065 -0.2498 -2.4546 15 7 2.1731 -0.9104 -3.5986 16 6 1.8478 -0.4496 -4.8227 17 8 1.1492 0.5390 -4.9341 18 6 2.3450 -1.1430 -6.0295 19 6 3.1514 -2.2758 -5.9047 20 6 3.6082 -2.9213 -7.0346 21 6 3.2770 -2.4421 -8.2909 22 35 3.9136 -3.3289 -9.8350 23 6 2.4819 -1.3158 -8.4211 24 6 2.0146 -0.6647 -7.2988 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9029 -0.5286 4.4375 29 1 1.1491 0.5391 -2.5436 30 1 2.7308 -1.6990 -3.5097 31 1 3.4134 -2.6484 -4.9255 32 1 4.2290 -3.7999 -6.9394 33 1 2.2272 -0.9465 -9.4035 34 1 1.3949 0.2138 -7.4015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328071420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:30 Heat of formation + Delta-G solvation = -4.109007 kcal Electronic energy + Delta-G solvation = -20312.090387 eV Core-core repulsion = 16871.899049 eV Total energy + Delta-G solvation = -3440.191338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66295 -39.34501 -38.30299 -35.19241 -34.02307 -33.11540 -31.91422 -31.49786 -30.64057 -29.30423 -25.24712 -24.30832 -23.35903 -22.76892 -21.26125 -20.12675 -18.12299 -17.77050 -16.86528 -16.30075 -15.78681 -15.60875 -15.45143 -15.03891 -14.82035 -14.30819 -14.23188 -13.96989 -13.57841 -13.37326 -12.88562 -12.38815 -12.25326 -11.81831 -11.79082 -11.38377 -11.23292 -10.95164 -10.77134 -10.72815 -10.46843 -10.33362 -9.72868 -9.58777 -9.25746 -9.22800 -9.10859 -8.66897 -8.14492 -6.14047 -4.16221 0.15884 0.78997 1.09049 1.96824 2.36850 3.17503 3.21555 3.27112 3.32583 3.41273 3.96748 4.21276 4.30378 4.35639 4.58683 4.74218 4.83453 5.05588 5.14888 5.41529 5.50135 5.60515 5.64221 5.77676 6.01627 6.15088 6.17571 6.29157 6.57426 6.82689 6.86308 7.02559 7.39541 7.82700 7.94397 8.41825 8.80609 9.03324 9.43128 10.98355 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.039379 B = 0.002051 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.873847 B =13646.294927 C =14266.473710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 H 0.060 0.940 4 C -0.511 4.511 5 H 0.095 0.905 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.266 1.266 12 C 0.531 3.469 13 O -0.528 6.528 14 N -0.539 5.539 15 N -0.513 5.513 16 C 0.552 3.448 17 O -0.539 6.539 18 C -0.106 4.106 19 C -0.080 4.080 20 C -0.095 4.095 21 C -0.069 4.069 22 Br -0.044 7.044 23 C -0.098 4.098 24 C -0.051 4.051 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.428 0.572 30 H 0.429 0.571 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 -2.651 -28.720 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 H 0.078 0.922 4 C -0.549 4.549 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.191 1.191 12 C 0.320 3.680 13 O -0.400 6.400 14 N -0.291 5.291 15 N -0.258 5.258 16 C 0.339 3.661 17 O -0.416 6.416 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.149 4.149 22 Br 0.041 6.959 23 C -0.118 4.118 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.270 0.730 30 H 0.272 0.728 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.852 -3.035 -29.032 29.249 hybrid contribution -0.722 0.923 0.577 1.306 sum 1.130 -2.112 -28.455 28.556 Atomic orbital electron populations 1.22191 0.96815 1.01941 0.99794 1.19314 0.93552 0.97752 0.90702 0.92241 1.20857 1.32723 1.14379 0.86928 0.88683 1.24948 0.95711 0.96598 0.95653 1.69871 1.45044 1.40038 0.97951 0.86928 0.80743 0.83676 0.77356 1.20334 1.22135 1.19060 1.21895 0.79212 0.84841 0.82008 1.90601 1.37460 1.26275 1.85676 1.45734 1.55269 1.31348 0.96747 1.44693 1.52189 1.30324 0.98606 1.18182 0.81370 0.84729 0.81859 1.90802 1.38574 1.26032 1.86240 1.19868 1.00787 0.97135 0.93334 1.21439 0.95301 0.93847 0.99376 1.21094 0.99800 1.00348 0.90242 1.22094 1.01886 0.98228 0.92692 1.96777 1.87089 1.77396 1.34605 1.21129 0.96797 0.94066 0.99811 1.21282 0.96834 0.99044 0.89937 0.92810 0.94483 0.92026 0.92361 0.72987 0.72812 0.84263 0.83997 0.84061 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.57 37.15 0.32 -2.64 16 2 C 0.01 0.22 2.23 -92.92 -0.21 0.02 16 3 H 0.06 1.27 7.20 -51.93 -0.37 0.90 16 4 C -0.51 -14.13 8.96 -34.44 -0.31 -14.44 16 5 H 0.10 2.99 7.00 -52.48 -0.37 2.62 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.88 20.60 24.37 -169.99 -4.14 16.45 16 9 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.27 -5.74 6.53 56.52 0.37 -5.37 16 12 C 0.53 10.98 7.27 -10.98 -0.08 10.90 16 13 O -0.53 -12.46 15.30 5.56 0.09 -12.38 16 14 N -0.54 -8.99 6.15 31.22 0.19 -8.80 16 15 N -0.51 -7.34 6.21 30.52 0.19 -7.16 16 16 C 0.55 7.42 7.89 -12.35 -0.10 7.32 16 17 O -0.54 -8.61 16.18 5.31 0.09 -8.52 16 18 C -0.11 -1.10 5.87 -104.97 -0.62 -1.72 16 19 C -0.08 -0.69 9.54 -39.19 -0.37 -1.06 16 20 C -0.10 -0.74 9.77 -39.61 -0.39 -1.12 16 21 C -0.07 -0.55 6.23 -39.40 -0.25 -0.79 16 22 Br -0.04 -0.32 33.69 -68.01 -2.29 -2.61 16 23 C -0.10 -0.75 9.77 -39.61 -0.39 -1.14 16 24 C -0.05 -0.46 9.59 -39.19 -0.38 -0.84 16 25 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 26 H 0.04 0.59 7.56 -51.93 -0.39 0.19 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.43 6.59 7.42 -182.60 -1.35 5.23 16 30 H 0.43 5.59 6.03 -182.60 -1.10 4.49 16 31 H 0.14 1.02 6.40 -52.49 -0.34 0.69 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.15 1.28 7.65 -52.49 -0.40 0.88 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -32.78 312.60 -8.20 -40.98 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.95 Total: 6.87 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.86 Total: -3.57 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.16 Total: -41.93 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.14 Total: 16.45 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.29 Total: -2.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.78 -8.20 -40.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328071420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds