Wall clock time and date at job start Sat Apr 11 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38464 * 119.89300 * 90.00064 * 12 9 7 14 14 C 1.38204 * 120.34432 * 179.97438 * 13 12 9 15 15 C 1.38321 * 120.12025 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.11057 * 180.02562 * 15 14 13 17 17 C 1.39845 * 119.77668 * 0.02562 * 15 14 13 18 18 C 1.47650 * 120.16556 * 180.02562 * 17 15 14 19 19 O 1.21586 * 120.00192 * 359.97438 * 18 17 15 20 20 N 1.34778 * 119.99688 * 179.97438 * 18 17 15 21 21 C 1.39447 * 119.99836 * 179.97438 * 20 18 17 22 22 C 1.35827 * 126.67772 * 359.68643 * 21 20 18 23 23 N 1.33276 * 108.86707 * 179.83045 * 22 21 20 24 24 N 1.28740 * 109.99090 * 0.44901 * 23 22 21 25 25 N 1.36286 * 126.67531 * 180.02562 * 21 20 18 26 26 H 0.96996 * 126.84632 * 359.96757 * 25 21 20 27 27 C 1.37858 * 119.89124 * 269.72169 * 12 9 7 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.82935 * 359.97235 * 13 12 9 30 30 H 1.08002 * 119.94349 * 180.02562 * 14 13 12 31 31 H 0.97006 * 120.00165 * 359.97438 * 20 18 17 32 32 H 1.07997 * 125.56675 * 359.97438 * 22 21 20 33 33 H 1.08004 * 120.05393 * 359.97438 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 6 2.3201 -4.0132 -0.0120 13 6 2.7886 -4.5251 1.1862 14 6 3.7269 -5.5398 1.1926 15 6 4.2041 -6.0516 -0.0006 16 9 5.1208 -7.0439 0.0060 17 6 3.7343 -5.5383 -1.2137 18 6 4.2374 -6.0786 -2.4924 19 8 5.0625 -6.9717 -2.4924 20 7 3.7819 -5.5818 -3.6595 21 6 4.2574 -6.0917 -4.8672 22 6 5.1779 -7.0779 -5.0252 23 7 5.3669 -7.2864 -6.3279 24 7 4.6284 -6.4851 -7.0135 25 7 3.8936 -5.6930 -6.1186 26 1 3.2538 -5.0002 -6.3454 27 6 2.7826 -4.5161 -1.2094 28 1 -0.4850 0.8401 -0.0004 29 1 2.4190 -4.1293 2.1206 30 1 4.0876 -5.9346 2.1310 31 1 3.1233 -4.8696 -3.6595 32 1 5.6738 -7.6083 -4.2258 33 1 2.4116 -4.1182 -2.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362394695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:51 Heat of formation + Delta-G solvation = -32.608960 kcal Electronic energy + Delta-G solvation = -26332.547947 eV Core-core repulsion = 22016.424597 eV Total energy + Delta-G solvation = -4316.123350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.047 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.14996 -42.37449 -40.43234 -38.57261 -35.70374 -35.58175 -34.30907 -33.34861 -32.95729 -31.92813 -30.87824 -29.57733 -26.40401 -25.01344 -23.52282 -23.19109 -22.55572 -20.79544 -19.75060 -18.97732 -18.18697 -17.60458 -17.24624 -16.68946 -16.36376 -16.26576 -16.13686 -15.79677 -15.19020 -14.99952 -14.82328 -14.44569 -14.20078 -14.17125 -13.86570 -13.33116 -13.10242 -12.64189 -12.19678 -12.17849 -11.81178 -11.75356 -11.47820 -11.40598 -11.39169 -10.77043 -10.62403 -10.57693 -10.53545 -10.51961 -10.05993 -9.48161 -9.47577 -9.30736 -9.00863 -8.67835 -6.96124 -5.61862 0.26673 0.71282 1.08118 1.61656 1.73510 2.23306 2.57364 2.86089 2.91574 3.00116 3.05445 3.27276 3.81135 3.87037 3.93066 4.34346 4.40531 4.64659 4.75501 4.78059 4.89404 4.99246 5.01308 5.21955 5.30783 5.47339 5.50606 5.59144 5.83531 5.87857 6.17916 6.45810 6.54231 6.56007 6.71123 7.06209 7.46709 7.67307 7.98862 8.61879 9.98664 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003670 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.189915 B = 7627.227841 C = 8986.200176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.133 3.867 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -1.003 5.003 8 H 0.107 0.893 9 S 2.602 3.398 10 O -0.975 6.975 11 O -0.980 6.980 12 C -0.662 4.662 13 C 0.038 3.962 14 C -0.185 4.185 15 C 0.201 3.799 16 F -0.110 7.110 17 C -0.205 4.205 18 C 0.580 3.420 19 O -0.491 6.491 20 N -0.642 5.642 21 C 0.293 3.707 22 C -0.084 4.084 23 N -0.221 5.221 24 N -0.067 5.067 25 N -0.486 5.486 26 H 0.445 0.555 27 C 0.037 3.963 28 H 0.295 0.705 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.421 0.579 32 H 0.209 0.791 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 -6.509 -2.149 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.086 4.086 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.184 1.184 7 C -1.137 5.137 8 H 0.125 0.875 9 S 2.781 3.219 10 O -0.972 6.972 11 O -0.977 6.977 12 C -0.741 4.741 13 C 0.019 3.981 14 C -0.204 4.204 15 C 0.180 3.820 16 F -0.088 7.088 17 C -0.210 4.210 18 C 0.369 3.631 19 O -0.363 6.363 20 N -0.292 5.292 21 C 0.063 3.937 22 C -0.244 4.244 23 N -0.091 5.091 24 N -0.048 5.048 25 N -0.208 5.208 26 H 0.291 0.709 27 C 0.017 3.983 28 H 0.105 0.895 29 H 0.178 0.822 30 H 0.170 0.830 31 H 0.260 0.740 32 H 0.226 0.774 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.966 -7.746 -3.545 10.400 hybrid contribution 0.304 1.852 0.922 2.091 sum 6.269 -5.894 -2.624 8.996 Atomic orbital electron populations 1.69879 1.06751 1.31218 1.38893 1.24768 0.94585 1.00839 0.88393 0.86090 0.80200 0.79565 0.79419 1.19025 1.19711 1.18434 1.30052 1.05962 1.09593 1.68056 0.87487 1.01362 0.72991 0.73895 0.73676 1.93367 1.71769 1.87450 1.44627 1.93346 1.71915 1.87591 1.44842 1.31878 1.22429 1.22272 0.97521 1.21208 0.88840 0.89731 0.98325 1.21318 1.01375 1.00587 0.97124 1.17764 0.86247 0.84909 0.93058 1.91613 1.62562 1.57421 1.97238 1.19598 1.05793 1.04336 0.91267 1.17948 0.80952 0.81811 0.82389 1.90775 1.30976 1.28303 1.86267 1.42817 1.44568 1.39744 1.02111 1.18807 0.97488 0.96853 0.80522 1.23605 1.03832 1.02507 0.94490 1.74260 1.14856 1.15515 1.04441 1.82018 1.07536 1.04400 1.10822 1.48244 1.36485 1.32926 1.03154 0.70875 1.20980 0.89053 0.89696 0.98530 0.89486 0.82169 0.82974 0.73991 0.77437 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.90 13.19 55.43 0.73 -21.17 16 2 C 0.13 3.27 5.46 -17.82 -0.10 3.17 16 3 Si 0.92 18.24 29.54 -169.99 -5.02 13.22 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -1.00 -23.67 9.58 30.60 0.29 -23.37 16 8 H 0.11 2.27 7.81 -52.49 -0.41 1.86 16 9 S 2.60 57.93 4.65 -107.50 -0.50 57.43 16 10 O -0.97 -24.21 17.15 -57.17 -0.98 -25.19 16 11 O -0.98 -23.65 17.14 -57.17 -0.98 -24.63 16 12 C -0.66 -11.00 5.81 -39.64 -0.23 -11.23 16 13 C 0.04 0.54 9.51 -39.51 -0.38 0.16 16 14 C -0.18 -2.23 10.01 -39.56 -0.40 -2.63 16 15 C 0.20 2.68 7.29 -38.95 -0.28 2.40 16 16 F -0.11 -1.53 15.55 2.25 0.04 -1.50 16 17 C -0.20 -2.75 5.88 -104.92 -0.62 -3.37 16 18 C 0.58 7.54 7.73 -12.42 -0.10 7.44 16 19 O -0.49 -7.33 12.50 5.29 0.07 -7.26 16 20 N -0.64 -6.80 5.37 -12.20 -0.07 -6.86 16 21 C 0.29 3.39 8.16 -152.36 -1.24 2.15 16 22 C -0.08 -1.14 10.76 -17.79 -0.19 -1.33 16 23 N -0.22 -3.17 12.32 30.24 0.37 -2.80 16 24 N -0.07 -0.88 13.90 60.35 0.84 -0.04 16 25 N -0.49 -4.91 7.52 31.28 0.24 -4.68 16 26 H 0.45 2.82 8.96 -182.46 -1.64 1.19 16 27 C 0.04 0.52 9.01 -39.18 -0.35 0.17 16 28 H 0.29 6.90 8.31 -40.82 -0.34 6.57 16 29 H 0.16 2.09 7.60 -52.49 -0.40 1.69 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.42 3.40 6.85 -40.82 -0.28 3.12 16 32 H 0.21 2.84 5.83 -52.49 -0.31 2.53 16 33 H 0.15 1.80 5.95 -52.48 -0.31 1.49 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -32.84 318.73 -6.95 -39.80 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -2.90 Total: 5.32 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -3.59 Total: -26.44 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 2.11 Total: -35.55 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.89 Total: -57.09 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -0.50 Total: 57.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.84 -6.95 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362394695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.188 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds