Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38464 * 119.89300 * 90.00064 * 12 9 7 14 14 C 1.38204 * 120.34432 * 179.97438 * 13 12 9 15 15 C 1.38321 * 120.12025 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.11057 * 180.02562 * 15 14 13 17 17 C 1.39845 * 119.77668 * 0.02562 * 15 14 13 18 18 C 1.47650 * 120.16556 * 180.02562 * 17 15 14 19 19 O 1.21586 * 120.00192 * 359.97438 * 18 17 15 20 20 N 1.34778 * 119.99688 * 179.97438 * 18 17 15 21 21 C 1.39447 * 119.99836 * 179.97438 * 20 18 17 22 22 C 1.35827 * 126.67772 * 359.68643 * 21 20 18 23 23 N 1.33276 * 108.86707 * 179.83045 * 22 21 20 24 24 N 1.28740 * 109.99090 * 0.44901 * 23 22 21 25 25 N 1.36286 * 126.67531 * 180.02562 * 21 20 18 26 26 H 0.96996 * 126.84632 * 359.96757 * 25 21 20 27 27 C 1.37858 * 119.89124 * 269.72169 * 12 9 7 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.82935 * 359.97235 * 13 12 9 30 30 H 1.08002 * 119.94349 * 180.02562 * 14 13 12 31 31 H 0.97006 * 120.00165 * 359.97438 * 20 18 17 32 32 H 1.07997 * 125.56675 * 359.97438 * 22 21 20 33 33 H 1.08004 * 120.05393 * 359.97438 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 6 2.3201 -4.0132 -0.0120 13 6 2.7886 -4.5251 1.1862 14 6 3.7269 -5.5398 1.1926 15 6 4.2041 -6.0516 -0.0006 16 9 5.1208 -7.0439 0.0060 17 6 3.7343 -5.5383 -1.2137 18 6 4.2374 -6.0786 -2.4924 19 8 5.0625 -6.9717 -2.4924 20 7 3.7819 -5.5818 -3.6595 21 6 4.2574 -6.0917 -4.8672 22 6 5.1779 -7.0779 -5.0252 23 7 5.3669 -7.2864 -6.3279 24 7 4.6284 -6.4851 -7.0135 25 7 3.8936 -5.6930 -6.1186 26 1 3.2538 -5.0002 -6.3454 27 6 2.7826 -4.5161 -1.2094 28 1 -0.4850 0.8401 -0.0004 29 1 2.4190 -4.1293 2.1206 30 1 4.0876 -5.9346 2.1310 31 1 3.1233 -4.8696 -3.6595 32 1 5.6738 -7.6083 -4.2258 33 1 2.4116 -4.1182 -2.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362394695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -58.455285 kcal Electronic energy + Delta-G solvation = -26333.668728 eV Core-core repulsion = 22016.424597 eV Total energy + Delta-G solvation = -4317.244131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.047 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -50.23323 -43.35960 -41.48673 -39.68345 -37.42014 -36.68930 -36.12952 -35.16812 -33.93837 -32.99270 -32.04205 -30.58387 -28.24205 -26.07635 -24.59235 -24.22666 -23.65831 -21.85256 -20.90252 -20.50478 -19.36662 -18.90606 -18.46359 -18.12440 -17.48848 -17.38240 -17.31559 -16.85117 -16.78815 -16.10602 -15.87195 -15.82631 -15.77874 -15.43779 -14.94586 -14.52856 -14.36522 -14.01829 -13.70892 -13.26147 -13.19379 -12.98705 -12.83694 -12.82230 -12.46816 -12.41153 -12.36468 -12.27847 -11.80867 -11.48269 -11.43105 -11.22543 -10.90021 -10.55518 -10.34645 -9.67198 -8.75747 -7.48906 -0.83519 -0.41543 0.07194 0.10055 0.67219 1.18158 1.38292 1.40813 1.53819 1.55486 2.00246 2.15873 2.25113 2.59889 2.74550 2.92838 3.30817 3.39621 3.65644 3.68245 3.75249 3.79109 3.86992 3.96201 4.04313 4.37907 4.47693 4.52116 4.62041 4.76275 4.98799 5.16554 5.28421 5.39840 5.71834 5.87416 5.89663 6.48512 6.79353 6.99374 8.21002 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003670 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.189915 B = 7627.227841 C = 8986.200176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.248 1.248 7 C -1.021 5.021 8 H 0.126 0.874 9 S 2.602 3.398 10 O -1.014 7.014 11 O -1.012 7.012 12 C -0.671 4.671 13 C 0.033 3.967 14 C -0.164 4.164 15 C 0.201 3.799 16 F -0.111 7.111 17 C -0.201 4.201 18 C 0.583 3.417 19 O -0.510 6.510 20 N -0.627 5.627 21 C 0.299 3.701 22 C -0.097 4.097 23 N -0.243 5.243 24 N -0.080 5.080 25 N -0.463 5.463 26 H 0.462 0.538 27 C 0.039 3.961 28 H 0.300 0.700 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.434 0.566 32 H 0.204 0.796 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -6.372 -1.963 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.137 4.137 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.171 1.171 7 C -1.155 5.155 8 H 0.144 0.856 9 S 2.788 3.212 10 O -1.011 7.011 11 O -1.009 7.009 12 C -0.757 4.757 13 C 0.014 3.986 14 C -0.183 4.183 15 C 0.180 3.820 16 F -0.089 7.089 17 C -0.206 4.206 18 C 0.372 3.628 19 O -0.384 6.384 20 N -0.279 5.279 21 C 0.068 3.932 22 C -0.257 4.257 23 N -0.112 5.112 24 N -0.061 5.061 25 N -0.188 5.188 26 H 0.312 0.688 27 C 0.020 3.980 28 H 0.110 0.890 29 H 0.186 0.814 30 H 0.208 0.792 31 H 0.276 0.724 32 H 0.221 0.779 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.410 -7.541 -3.386 11.101 hybrid contribution -0.109 1.676 0.872 1.892 sum 7.301 -5.865 -2.514 9.697 Atomic orbital electron populations 1.69971 1.08563 1.32460 1.40734 1.25883 0.95296 1.04858 0.87634 0.85204 0.79274 0.75202 0.80098 1.17892 1.19090 1.17089 1.30504 1.07145 1.10581 1.67228 0.85629 1.00659 0.73607 0.74477 0.72438 1.93313 1.73739 1.88302 1.45786 1.93295 1.73676 1.88351 1.45568 1.30983 1.22973 1.22030 0.99718 1.21384 0.89203 0.90261 0.97758 1.21581 0.99574 0.98892 0.98277 1.17983 0.85922 0.84627 0.93481 1.91622 1.62566 1.57438 1.97255 1.19578 1.05366 1.03910 0.91716 1.17876 0.80697 0.81551 0.82717 1.90783 1.31876 1.29180 1.86540 1.42630 1.44348 1.39638 1.01247 1.18664 0.97045 0.96431 0.81040 1.23622 1.04582 1.03263 0.94265 1.74250 1.15710 1.16340 1.04900 1.81958 1.07981 1.04835 1.11320 1.48146 1.35910 1.32517 1.02211 0.68761 1.21097 0.88873 0.89651 0.98416 0.88975 0.81367 0.79157 0.72434 0.77928 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.24 13.19 21.45 0.28 -46.95 16 2 C 0.08 3.78 5.46 84.66 0.46 4.24 16 3 Si 0.98 36.39 29.54 68.60 2.03 38.41 16 4 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 7 C -1.02 -48.03 9.58 67.74 0.65 -47.38 16 8 H 0.13 5.19 7.81 -2.91 -0.02 5.16 16 9 S 2.60 117.14 4.65 -56.49 -0.26 116.88 16 10 O -1.01 -51.63 17.15 -128.00 -2.20 -53.82 16 11 O -1.01 -49.80 17.14 -128.00 -2.19 -51.99 16 12 C -0.67 -21.55 5.81 22.23 0.13 -21.42 16 13 C 0.03 0.87 9.51 22.32 0.21 1.08 16 14 C -0.16 -3.42 10.01 22.28 0.22 -3.19 16 15 C 0.20 4.78 7.29 22.68 0.17 4.95 16 16 F -0.11 -2.78 15.55 44.97 0.70 -2.08 16 17 C -0.20 -4.92 5.88 -20.06 -0.12 -5.04 16 18 C 0.58 13.97 7.73 86.73 0.67 14.64 16 19 O -0.51 -14.41 12.50 -3.99 -0.05 -14.46 16 20 N -0.63 -11.96 5.37 -310.78 -1.67 -13.63 16 21 C 0.30 6.41 8.16 130.94 1.07 7.48 16 22 C -0.10 -2.51 10.76 83.91 0.90 -1.61 16 23 N -0.24 -6.81 12.32 -58.25 -0.72 -7.53 16 24 N -0.08 -2.02 13.90 37.02 0.51 -1.50 16 25 N -0.46 -8.49 7.52 -54.95 -0.41 -8.90 16 26 H 0.46 4.79 8.96 -213.20 -1.91 2.88 16 27 C 0.04 1.04 9.01 22.53 0.20 1.24 16 28 H 0.30 14.40 8.31 -92.70 -0.77 13.63 16 29 H 0.17 4.15 7.60 -2.91 -0.02 4.13 16 30 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.43 5.98 6.85 -92.70 -0.64 5.35 16 32 H 0.20 5.44 5.83 -2.91 -0.02 5.42 16 33 H 0.17 3.73 5.95 -2.91 -0.02 3.71 16 Total: -1.00 -71.97 318.73 -0.71 -72.68 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -1.30 Total: 17.92 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.57 Total: -45.03 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.00 Total: -78.52 kcal Atomic # 8 Polarization: -115.83 SS G_CDS: -4.44 Total: -120.27 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.70 Total: -2.08 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 117.14 SS G_CDS: -0.26 Total: 116.88 kcal Total: -71.97 -0.71 -72.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362394695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.224 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds