Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38469 * 119.89113 * 269.72500 * 12 9 7 14 14 C 1.38204 * 120.34026 * 179.72533 * 13 12 9 15 15 C 1.38322 * 120.11376 * 0.54495 * 14 13 12 16 16 F 1.35106 * 120.10569 * 179.70451 * 15 14 13 17 17 C 1.39821 * 119.78542 * 359.73215 * 15 14 13 18 18 C 1.47684 * 120.16950 * 180.02562 * 17 15 14 19 19 O 1.21570 * 120.00349 * 359.97412 * 18 17 15 20 20 N 1.34778 * 120.00128 * 179.97438 * 18 17 15 21 21 N 1.40106 * 120.00113 * 180.02562 * 20 18 17 22 22 C 1.35307 * 125.86582 * 359.71591 * 21 20 18 23 23 C 1.35359 * 106.17431 * 179.85101 * 22 21 20 24 24 N 1.33775 * 106.49278 * 0.40445 * 23 22 21 25 25 N 1.28640 * 108.88792 * 359.74069 * 24 23 22 26 26 C 1.37853 * 119.89327 * 89.99910 * 12 9 7 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.82703 * 359.97438 * 13 12 9 29 29 H 1.07999 * 119.93979 * 180.27814 * 14 13 12 30 30 H 0.97004 * 119.99692 * 359.97438 * 20 18 17 31 31 H 1.08000 * 126.91655 * 359.97438 * 22 21 20 32 32 H 1.07996 * 126.75341 * 180.10839 * 23 22 21 33 33 H 1.08001 * 120.05966 * 359.97336 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.1730 -0.6522 -1.2423 11 8 4.1626 -0.6471 1.2571 12 6 4.2880 -2.8771 0.0124 13 6 4.4928 -3.5321 1.2150 14 6 4.8963 -4.8538 1.2302 15 6 5.1094 -5.5281 0.0414 16 9 5.5097 -6.8184 0.0565 17 6 4.9098 -4.8698 -1.1759 18 6 5.1342 -5.5817 -2.4502 19 8 5.4940 -6.7430 -2.4426 20 7 4.9402 -4.9441 -3.6216 21 7 5.1527 -5.6196 -4.8305 22 6 5.5563 -6.9045 -4.9603 23 6 5.6284 -7.1446 -6.2905 24 7 5.2787 -6.0069 -6.9012 25 7 5.0028 -5.1228 -6.0084 26 6 4.4964 -3.5357 -1.1806 27 1 -0.4849 0.8400 0.0004 28 1 4.3323 -3.0087 2.1459 29 1 5.0498 -5.3598 2.1720 30 1 4.6528 -4.0176 -3.6277 31 1 5.7748 -7.5995 -4.1631 32 1 5.9166 -8.0707 -6.7654 33 1 4.3398 -3.0212 -2.1171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362613938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = 31.355047 kcal Electronic energy + Delta-G solvation = -26476.250169 eV Core-core repulsion = 22162.900506 eV Total energy + Delta-G solvation = -4313.349663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.047 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.30703 -43.58341 -40.63673 -38.75496 -36.07129 -35.98359 -34.76858 -33.25906 -32.76581 -31.36066 -31.07687 -30.75225 -26.65522 -25.22435 -23.71236 -23.38386 -22.82196 -21.35162 -19.46407 -19.01342 -18.37495 -17.73370 -17.31920 -17.09144 -16.92347 -16.51551 -16.09658 -15.59107 -15.26108 -15.20504 -15.07544 -14.72226 -14.44886 -14.04619 -13.71110 -13.53651 -13.39852 -13.09423 -12.65998 -12.15041 -12.02741 -11.99018 -11.61003 -11.32340 -11.31673 -10.95063 -10.92254 -10.75969 -10.61882 -9.88080 -9.82698 -9.64205 -9.52328 -9.48208 -9.39787 -9.13681 -7.00693 -5.61265 0.12334 0.50583 0.56748 1.31859 1.45210 2.09607 2.29937 2.94800 3.04328 3.07454 3.12003 3.25541 3.65315 3.78454 3.82682 4.21562 4.36592 4.41545 4.46876 4.63104 4.79126 4.85925 4.94844 5.04446 5.06891 5.13498 5.32330 5.42807 5.66143 5.71632 5.83293 6.18315 6.24922 6.31438 6.44361 7.25096 7.29402 7.95812 8.16952 8.45994 10.10413 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.003753 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.343004 B = 7458.333406 C = 8916.135946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.154 3.846 3 Si 0.800 3.200 4 H -0.243 1.243 5 H -0.252 1.252 6 H -0.217 1.217 7 C -0.998 4.998 8 H 0.126 0.874 9 S 2.557 3.443 10 O -0.982 6.982 11 O -0.978 6.978 12 C -0.647 4.647 13 C 0.043 3.957 14 C -0.182 4.182 15 C 0.208 3.792 16 F -0.109 7.109 17 C -0.197 4.197 18 C 0.581 3.419 19 O -0.501 6.501 20 N -0.499 5.499 21 N -0.091 5.091 22 C -0.030 4.030 23 C -0.051 4.051 24 N -0.251 5.251 25 N -0.090 5.090 26 C 0.041 3.959 27 H 0.285 0.715 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.447 0.553 31 H 0.215 0.785 32 H 0.200 0.800 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -11.179 -0.907 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.067 4.067 3 Si 0.619 3.381 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.139 1.139 7 C -1.133 5.133 8 H 0.144 0.856 9 S 2.740 3.260 10 O -0.979 6.979 11 O -0.975 6.975 12 C -0.729 4.729 13 C 0.025 3.975 14 C -0.201 4.201 15 C 0.187 3.813 16 F -0.087 7.087 17 C -0.204 4.204 18 C 0.370 3.630 19 O -0.374 6.374 20 N -0.254 5.254 21 N 0.033 4.967 22 C -0.181 4.181 23 C -0.210 4.210 24 N -0.118 5.118 25 N -0.071 5.071 26 C 0.022 3.978 27 H 0.096 0.904 28 H 0.182 0.818 29 H 0.174 0.826 30 H 0.294 0.706 31 H 0.231 0.769 32 H 0.217 0.783 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.223 -10.079 -1.696 13.766 hybrid contribution -0.181 -0.693 0.656 0.971 sum 9.042 -10.771 -1.040 14.102 Atomic orbital electron populations 1.69953 1.06525 1.29525 1.38101 1.24396 0.94820 0.98837 0.88608 0.87876 0.83654 0.84351 0.82196 1.16692 1.17614 1.13922 1.29819 1.12757 1.02672 1.68056 0.85638 1.02303 0.78372 0.71093 0.74190 1.93414 1.85343 1.74814 1.44371 1.93472 1.85530 1.74402 1.44061 1.31273 1.15069 1.28821 0.97698 1.21254 0.85639 0.92397 0.98228 1.21320 1.05664 0.95932 0.97220 1.17724 0.92108 0.78634 0.92808 1.91623 1.86454 1.33373 1.97207 1.19323 1.14868 0.96080 0.90126 1.18282 0.76748 0.86468 0.81545 1.90789 1.45077 1.15605 1.85917 1.45361 1.71656 1.15321 0.93035 1.46037 1.43002 1.08224 0.99418 1.24399 1.06444 0.86080 1.01175 1.23626 1.07238 0.99481 0.90629 1.75201 1.15341 0.99645 1.21661 1.78643 1.22046 1.22459 0.83993 1.21038 0.87263 0.90729 0.98807 0.90440 0.81801 0.82575 0.70632 0.76863 0.78292 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.47 13.96 55.43 0.77 -20.70 16 2 C 0.15 3.99 5.47 -17.82 -0.10 3.89 16 3 Si 0.80 18.46 26.54 -169.99 -4.51 13.95 16 4 H -0.24 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.25 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.22 -5.01 5.60 56.52 0.32 -4.69 16 7 C -1.00 -24.37 10.12 30.60 0.31 -24.06 16 8 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 9 S 2.56 53.92 3.86 -107.50 -0.42 53.51 16 10 O -0.98 -21.97 15.97 -57.17 -0.91 -22.89 16 11 O -0.98 -22.04 15.14 -57.17 -0.87 -22.90 16 12 C -0.65 -10.32 5.81 -39.64 -0.23 -10.55 16 13 C 0.04 0.58 9.51 -39.51 -0.38 0.20 16 14 C -0.18 -2.03 10.01 -39.56 -0.40 -2.43 16 15 C 0.21 2.61 7.29 -38.96 -0.28 2.33 16 16 F -0.11 -1.41 15.55 2.25 0.04 -1.37 16 17 C -0.20 -2.57 5.88 -104.91 -0.62 -3.18 16 18 C 0.58 7.56 7.84 -12.40 -0.10 7.46 16 19 O -0.50 -7.14 12.46 5.30 0.07 -7.07 16 20 N -0.50 -6.15 6.58 30.49 0.20 -5.94 16 21 N -0.09 -1.23 4.54 30.52 0.14 -1.09 16 22 C -0.03 -0.35 10.50 -17.05 -0.18 -0.53 16 23 C -0.05 -0.56 12.06 -17.73 -0.21 -0.77 16 24 N -0.25 -3.56 12.41 30.24 0.38 -3.18 16 25 N -0.09 -1.35 13.34 60.35 0.81 -0.55 16 26 C 0.04 0.57 9.01 -39.19 -0.35 0.22 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.16 1.95 7.60 -52.49 -0.40 1.56 16 29 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.45 4.68 6.86 -182.59 -1.25 3.43 16 31 H 0.21 2.33 5.85 -52.49 -0.31 2.02 16 32 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.87 5.95 -52.49 -0.31 1.55 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -31.48 312.41 -4.90 -36.38 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.76 Total: 4.58 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.53 Total: -27.42 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 2.29 Total: -31.46 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -1.71 Total: -52.86 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.51 Total: 13.95 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.42 Total: 53.51 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.48 -4.90 -36.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362613938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.731 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds