Wall clock time and date at job start Sat Apr 11 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38469 * 119.89113 * 269.72500 * 12 9 7 14 14 C 1.38204 * 120.34026 * 179.72533 * 13 12 9 15 15 C 1.38322 * 120.11376 * 0.54495 * 14 13 12 16 16 F 1.35106 * 120.10569 * 179.70451 * 15 14 13 17 17 C 1.39821 * 119.78542 * 359.73215 * 15 14 13 18 18 C 1.47684 * 120.16950 * 180.02562 * 17 15 14 19 19 O 1.21570 * 120.00349 * 359.97412 * 18 17 15 20 20 N 1.34778 * 120.00128 * 179.97438 * 18 17 15 21 21 N 1.40106 * 120.00113 * 180.02562 * 20 18 17 22 22 C 1.35307 * 125.86582 * 359.71591 * 21 20 18 23 23 C 1.35359 * 106.17431 * 179.85101 * 22 21 20 24 24 N 1.33775 * 106.49278 * 0.40445 * 23 22 21 25 25 N 1.28640 * 108.88792 * 359.74069 * 24 23 22 26 26 C 1.37853 * 119.89327 * 89.99910 * 12 9 7 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.82703 * 359.97438 * 13 12 9 29 29 H 1.07999 * 119.93979 * 180.27814 * 14 13 12 30 30 H 0.97004 * 119.99692 * 359.97438 * 20 18 17 31 31 H 1.08000 * 126.91655 * 359.97438 * 22 21 20 32 32 H 1.07996 * 126.75341 * 180.10839 * 23 22 21 33 33 H 1.08001 * 120.05966 * 359.97336 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.1730 -0.6522 -1.2423 11 8 4.1626 -0.6471 1.2571 12 6 4.2880 -2.8771 0.0124 13 6 4.4928 -3.5321 1.2150 14 6 4.8963 -4.8538 1.2302 15 6 5.1094 -5.5281 0.0414 16 9 5.5097 -6.8184 0.0565 17 6 4.9098 -4.8698 -1.1759 18 6 5.1342 -5.5817 -2.4502 19 8 5.4940 -6.7430 -2.4426 20 7 4.9402 -4.9441 -3.6216 21 7 5.1527 -5.6196 -4.8305 22 6 5.5563 -6.9045 -4.9603 23 6 5.6284 -7.1446 -6.2905 24 7 5.2787 -6.0069 -6.9012 25 7 5.0028 -5.1228 -6.0084 26 6 4.4964 -3.5357 -1.1806 27 1 -0.4849 0.8400 0.0004 28 1 4.3323 -3.0087 2.1459 29 1 5.0498 -5.3598 2.1720 30 1 4.6528 -4.0176 -3.6277 31 1 5.7748 -7.5995 -4.1631 32 1 5.9166 -8.0707 -6.7654 33 1 4.3398 -3.0212 -2.1171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362613938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:53 Heat of formation + Delta-G solvation = 6.685905 kcal Electronic energy + Delta-G solvation = -26477.319903 eV Core-core repulsion = 22162.900506 eV Total energy + Delta-G solvation = -4314.419397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.047 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.32472 -44.56356 -41.67973 -39.82196 -37.73048 -37.06709 -36.50717 -35.18605 -33.79638 -32.32174 -32.17519 -31.77139 -28.56525 -26.26146 -24.76751 -24.35838 -23.91449 -22.38551 -20.86038 -20.23346 -19.65330 -19.15885 -18.58678 -18.26295 -18.10058 -17.71214 -17.13316 -17.02800 -16.54348 -16.20307 -16.10801 -16.02829 -15.56781 -15.49354 -15.02227 -14.98461 -14.65144 -14.57719 -13.83466 -13.44935 -13.22189 -13.11285 -13.04625 -12.99117 -12.65839 -12.57144 -12.43117 -12.29900 -11.77970 -11.50373 -11.30008 -11.12547 -10.83978 -10.61241 -10.50934 -10.42371 -8.95080 -7.54807 -0.93685 -0.52267 -0.46595 -0.15972 0.32486 1.07535 1.11679 1.20187 1.26933 1.37858 1.92667 2.01634 2.27316 2.43984 2.62645 2.80619 2.86617 3.25084 3.32660 3.54539 3.57970 3.81542 3.84101 3.90761 4.09812 4.28281 4.35776 4.41447 4.43356 4.67873 4.82774 5.02818 5.29449 5.32457 5.36746 5.47097 6.01922 6.28728 6.53752 7.18332 8.21311 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.003753 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.343004 B = 7458.333406 C = 8916.135946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.112 3.888 3 Si 0.819 3.181 4 H -0.240 1.240 5 H -0.226 1.226 6 H -0.218 1.218 7 C -1.019 5.019 8 H 0.112 0.888 9 S 2.575 3.425 10 O -1.002 7.002 11 O -0.996 6.996 12 C -0.659 4.659 13 C 0.040 3.960 14 C -0.160 4.160 15 C 0.211 3.789 16 F -0.107 7.107 17 C -0.195 4.195 18 C 0.585 3.415 19 O -0.513 6.513 20 N -0.495 5.495 21 N -0.098 5.098 22 C -0.034 4.034 23 C -0.037 4.037 24 N -0.275 5.275 25 N -0.121 5.121 26 C 0.039 3.961 27 H 0.292 0.708 28 H 0.178 0.822 29 H 0.199 0.801 30 H 0.452 0.548 31 H 0.225 0.775 32 H 0.241 0.759 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.344 -12.784 -0.309 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.105 4.105 3 Si 0.636 3.364 4 H -0.163 1.163 5 H -0.148 1.148 6 H -0.140 1.140 7 C -1.152 5.152 8 H 0.131 0.869 9 S 2.763 3.237 10 O -0.999 6.999 11 O -0.993 6.993 12 C -0.748 4.748 13 C 0.022 3.978 14 C -0.179 4.179 15 C 0.190 3.810 16 F -0.085 7.085 17 C -0.201 4.201 18 C 0.374 3.626 19 O -0.387 6.387 20 N -0.250 5.250 21 N 0.025 4.975 22 C -0.186 4.186 23 C -0.196 4.196 24 N -0.142 5.142 25 N -0.102 5.102 26 C 0.020 3.980 27 H 0.103 0.897 28 H 0.195 0.805 29 H 0.216 0.784 30 H 0.301 0.699 31 H 0.241 0.759 32 H 0.258 0.742 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.588 -11.594 -1.108 15.740 hybrid contribution -0.555 -0.432 0.466 0.844 sum 10.033 -12.025 -0.642 15.674 Atomic orbital electron populations 1.69994 1.07535 1.30656 1.39767 1.25105 0.95488 1.01370 0.88556 0.87565 0.83320 0.82805 0.82747 1.16289 1.14833 1.14011 1.30427 1.15845 1.01976 1.66942 0.86943 1.01276 0.76312 0.72849 0.73306 1.93383 1.84762 1.76813 1.44905 1.93440 1.84941 1.76391 1.44524 1.30479 1.18252 1.26169 0.99852 1.21505 0.85272 0.93387 0.97675 1.21637 1.03224 0.94646 0.98379 1.17919 0.91391 0.78618 0.93051 1.91635 1.86314 1.33355 1.97207 1.19279 1.14798 0.95547 0.90521 1.18237 0.76510 0.86273 0.81593 1.90778 1.45765 1.16016 1.86100 1.45347 1.71279 1.15615 0.92793 1.46206 1.43060 1.08809 0.99382 1.24755 1.06195 0.85635 1.01979 1.24351 1.05206 0.99820 0.90204 1.75182 1.16140 1.00774 1.22133 1.78623 1.23674 1.23286 0.84583 1.21127 0.87022 0.91213 0.98669 0.89711 0.80454 0.78441 0.69949 0.75879 0.74244 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.75 13.96 21.45 0.30 -45.45 16 2 C 0.11 5.88 5.47 84.66 0.46 6.34 16 3 Si 0.82 37.21 26.54 68.60 1.82 39.03 16 4 H -0.24 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.23 -9.21 7.11 99.48 0.71 -8.51 16 6 H -0.22 -9.90 5.60 99.48 0.56 -9.35 16 7 C -1.02 -50.66 10.12 67.74 0.69 -49.97 16 8 H 0.11 5.68 8.06 -2.91 -0.02 5.66 16 9 S 2.57 108.15 3.86 -56.49 -0.22 107.93 16 10 O -1.00 -44.80 15.97 -128.00 -2.04 -46.84 16 11 O -1.00 -44.39 15.14 -128.00 -1.94 -46.33 16 12 C -0.66 -20.26 5.81 22.23 0.13 -20.13 16 13 C 0.04 0.98 9.51 22.32 0.21 1.19 16 14 C -0.16 -2.97 10.01 22.28 0.22 -2.75 16 15 C 0.21 4.65 7.29 22.67 0.17 4.82 16 16 F -0.11 -2.44 15.55 44.97 0.70 -1.74 16 17 C -0.19 -4.68 5.88 -20.05 -0.12 -4.80 16 18 C 0.58 14.30 7.84 86.74 0.68 14.98 16 19 O -0.51 -13.61 12.46 -3.94 -0.05 -13.66 16 20 N -0.50 -11.76 6.58 -175.71 -1.16 -12.92 16 21 N -0.10 -2.57 4.54 -57.35 -0.26 -2.83 16 22 C -0.03 -0.76 10.50 83.49 0.88 0.12 16 23 C -0.04 -0.73 12.06 83.73 1.01 0.27 16 24 N -0.28 -7.54 12.41 -58.25 -0.72 -8.27 16 25 N -0.12 -3.58 13.34 37.02 0.49 -3.09 16 26 C 0.04 1.04 9.01 22.52 0.20 1.25 16 27 H 0.29 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.18 3.79 7.60 -2.91 -0.02 3.77 16 29 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.45 9.30 6.86 -213.31 -1.46 7.83 16 31 H 0.22 4.40 5.85 -2.91 -0.02 4.39 16 32 H 0.24 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.16 3.90 5.95 -2.91 -0.02 3.88 16 Total: -1.00 -68.36 312.41 1.06 -67.29 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.39 Total: 15.54 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 4.53 Total: -48.68 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.35 Total: -72.54 kcal Atomic # 8 Polarization: -102.80 SS G_CDS: -4.03 Total: -106.83 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.70 Total: -1.74 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 1.82 Total: 39.03 kcal Atomic # 16 Polarization: 108.15 SS G_CDS: -0.22 Total: 107.93 kcal Total: -68.36 1.06 -67.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362613938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.979 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds