Wall clock time and date at job start Sat Apr 11 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48503 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99530 * 3 2 1 6 6 H 1.48501 * 109.47492 * 59.99672 * 3 2 1 7 7 C 1.38653 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99794 * 185.05387 * 9 7 2 11 11 C 1.38876 * 120.07145 * 354.47487 * 10 9 7 12 12 C 1.38099 * 119.92977 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07222 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93296 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47005 * 89.99872 * 14 13 12 16 16 S 1.65605 * 120.00031 * 165.27600 * 15 14 13 17 17 O 1.42099 * 106.40385 * 178.26276 * 16 15 14 18 18 O 1.42096 * 106.40034 * 311.18361 * 16 15 14 19 19 C 1.76198 * 107.21748 * 64.72318 * 16 15 14 20 20 C 1.35132 * 127.25191 * 89.70916 * 19 16 15 21 21 C 1.37813 * 114.76596 * 179.86798 * 20 19 16 22 22 N 1.30084 * 116.87340 * 0.44621 * 21 20 19 23 23 S 1.69595 * 107.15347 * 359.75958 * 22 21 20 24 24 C 1.38303 * 120.13483 * 0.25024 * 13 12 11 25 25 C 1.38103 * 120.06928 * 359.45374 * 24 13 12 26 26 H 0.96998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03473 * 359.97438 * 11 10 9 28 28 H 1.08002 * 119.96236 * 179.97438 * 12 11 10 29 29 H 1.08994 * 109.46890 * 329.99794 * 14 13 12 30 30 H 1.08994 * 109.46986 * 209.99500 * 14 13 12 31 31 H 0.97000 * 120.00321 * 344.99958 * 15 14 13 32 32 H 1.07998 * 122.61708 * 0.03722 * 20 19 16 33 33 H 1.07999 * 121.56265 * 180.20506 * 21 20 19 34 34 H 1.08009 * 119.96396 * 179.70886 * 24 13 12 35 35 H 1.08002 * 120.03287 * 180.27094 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1086 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8203 0.3252 14 6 4.3850 -7.0816 0.4428 15 7 4.6566 -7.3575 1.8557 16 16 5.2096 -8.8488 2.3168 17 8 5.4115 -8.7851 3.7219 18 8 4.3578 -9.8020 1.6964 19 6 6.8027 -9.0605 1.5944 20 6 7.9953 -8.7162 2.1284 21 6 9.0866 -9.0030 1.3371 22 7 8.8477 -9.5543 0.1834 23 16 7.1669 -9.7423 0.0573 24 6 2.1874 -5.8890 0.3331 25 6 1.4366 -4.7344 0.2311 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4846 -0.0008 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0904 30 1 3.8311 -7.9145 0.0100 31 1 4.5163 -6.6654 2.5208 32 1 8.0864 -8.2548 3.1006 33 1 10.0927 -8.7771 1.6582 34 1 1.6954 -6.8462 0.4233 35 1 0.3580 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363939441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:57 Heat of formation + Delta-G solvation = -30.234087 kcal Electronic energy + Delta-G solvation = -23449.443626 eV Core-core repulsion = 19667.343683 eV Total energy + Delta-G solvation = -3782.099943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.25470 -39.23628 -37.51735 -37.12270 -36.15369 -34.81298 -32.38760 -31.96059 -30.32143 -29.60621 -25.93736 -25.84216 -24.62123 -22.10461 -21.63396 -20.74643 -19.79003 -19.04205 -18.12610 -17.79115 -17.26171 -17.03642 -16.25038 -15.39173 -15.01519 -14.91258 -14.70157 -14.60516 -14.22450 -13.85016 -13.76187 -13.66055 -13.16386 -12.84973 -12.66826 -12.52671 -12.33137 -12.27173 -12.25482 -11.79884 -11.74324 -11.38389 -11.04487 -10.94408 -10.83761 -10.76118 -10.71863 -10.50353 -9.73930 -9.44865 -9.27146 -8.95314 -8.32637 -7.37070 -6.56432 -4.15127 -0.34793 0.06887 0.81721 1.27353 1.78050 2.04736 2.09388 2.83617 3.05988 3.07177 3.12709 3.38970 3.87256 4.10874 4.41200 4.46722 4.52808 4.86644 4.96957 4.98529 5.14315 5.20133 5.21157 5.44806 5.58072 5.70739 5.83561 5.89142 6.08854 6.29040 6.55842 6.76023 6.79180 6.94227 7.11484 7.21530 7.31458 7.67357 7.88225 8.88919 9.56882 10.61082 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.002395 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.707067 B =11689.865777 C =12252.447438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.052 4.052 13 C -0.207 4.207 14 C 0.172 3.828 15 N -1.101 6.101 16 S 2.720 3.280 17 O -0.949 6.949 18 O -0.943 6.943 19 C -0.787 4.787 20 C -0.061 4.061 21 C 0.066 3.934 22 N -0.436 5.436 23 S 0.386 5.614 24 C -0.053 4.053 25 C -0.194 4.194 26 H 0.271 0.729 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.424 0.576 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.116 0.884 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -15.630 2.642 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.071 4.071 13 C -0.210 4.210 14 C 0.048 3.952 15 N -0.865 5.865 16 S 2.802 3.198 17 O -0.939 6.939 18 O -0.933 6.933 19 C -0.997 4.997 20 C -0.101 4.101 21 C -0.131 4.131 22 N -0.260 5.260 23 S 0.540 5.460 24 C -0.072 4.072 25 C -0.214 4.214 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.261 0.739 32 H 0.190 0.810 33 H 0.211 0.789 34 H 0.134 0.866 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.519 -17.124 0.937 22.470 hybrid contribution 1.434 2.253 1.593 3.110 sum 15.953 -14.871 2.530 21.956 Atomic orbital electron populations 1.70045 1.06024 1.27825 1.45319 1.25330 0.95866 0.98971 0.96324 0.85623 0.79120 0.80182 0.78360 1.19047 1.20059 1.20041 1.21408 0.91891 0.80699 1.52934 0.88843 1.83982 1.34548 1.11595 1.77354 1.19449 0.90326 0.88061 0.91563 1.21148 0.93791 0.98944 1.11795 1.20614 0.98304 0.91636 0.96556 1.19009 0.93502 0.93101 1.15397 1.20070 0.98631 0.97312 0.79234 1.55693 1.81048 1.32933 1.16827 1.01478 0.72038 0.73295 0.72982 1.93606 1.85891 1.86299 1.28107 1.93630 1.62095 1.59673 1.77928 1.37319 1.27085 1.19678 1.15636 1.21320 0.88615 0.97671 1.02455 1.23147 1.02175 0.97700 0.90041 1.76558 1.09766 1.18622 1.21082 1.84089 1.00645 1.51416 1.09817 1.20574 0.92744 0.97043 0.96798 1.20236 0.99775 0.90213 1.11154 0.91876 0.85409 0.87413 0.91923 0.89921 0.73896 0.81014 0.78924 0.86620 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.67 55.48 0.76 -23.58 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.49 9.49 30.89 0.29 -10.20 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.69 9.76 0.03 0.00 -4.69 16 10 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.24 -4.71 9.17 -39.40 -0.36 -5.07 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.21 -3.04 5.28 -104.58 -0.55 -3.59 16 14 C 0.17 1.92 6.34 -5.19 -0.03 1.89 16 15 N -1.10 -11.29 5.99 -11.66 -0.07 -11.36 16 16 S 2.72 29.09 5.90 -107.50 -0.63 28.46 16 17 O -0.95 -12.14 17.89 -57.17 -1.02 -13.16 16 18 O -0.94 -12.39 17.46 -57.17 -1.00 -13.38 16 19 C -0.79 -7.29 6.61 29.63 0.20 -7.09 16 20 C -0.06 -0.45 10.05 -40.84 -0.41 -0.86 16 21 C 0.07 0.47 11.27 -18.45 -0.21 0.26 16 22 N -0.44 -4.16 12.09 28.86 0.35 -3.81 16 23 S 0.39 3.63 23.67 -107.50 -2.54 1.08 16 24 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 25 C -0.19 -3.80 9.99 -39.39 -0.39 -4.20 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.13 2.56 5.64 -52.48 -0.30 2.27 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 31 H 0.42 4.10 8.64 -34.47 -0.30 3.81 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.19 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -33.30 340.90 -9.58 -42.88 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -2.94 Total: 4.73 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.59 Total: -26.97 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 1.04 Total: -38.75 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -2.02 Total: -31.24 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 32.72 SS G_CDS: -3.18 Total: 29.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.30 -9.58 -42.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363939441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.642 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds