Wall clock time and date at job start Sat Apr 11 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48503 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99530 * 3 2 1 6 6 H 1.48501 * 109.47492 * 59.99672 * 3 2 1 7 7 C 1.38653 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99794 * 185.05387 * 9 7 2 11 11 C 1.38876 * 120.07145 * 354.47487 * 10 9 7 12 12 C 1.38099 * 119.92977 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07222 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93296 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47005 * 89.99872 * 14 13 12 16 16 S 1.65605 * 120.00031 * 165.27600 * 15 14 13 17 17 O 1.42099 * 106.40385 * 178.26276 * 16 15 14 18 18 O 1.42096 * 106.40034 * 311.18361 * 16 15 14 19 19 C 1.76198 * 107.21748 * 64.72318 * 16 15 14 20 20 C 1.35132 * 127.25191 * 89.70916 * 19 16 15 21 21 C 1.37813 * 114.76596 * 179.86798 * 20 19 16 22 22 N 1.30084 * 116.87340 * 0.44621 * 21 20 19 23 23 S 1.69595 * 107.15347 * 359.75958 * 22 21 20 24 24 C 1.38303 * 120.13483 * 0.25024 * 13 12 11 25 25 C 1.38103 * 120.06928 * 359.45374 * 24 13 12 26 26 H 0.96998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03473 * 359.97438 * 11 10 9 28 28 H 1.08002 * 119.96236 * 179.97438 * 12 11 10 29 29 H 1.08994 * 109.46890 * 329.99794 * 14 13 12 30 30 H 1.08994 * 109.46986 * 209.99500 * 14 13 12 31 31 H 0.97000 * 120.00321 * 344.99958 * 15 14 13 32 32 H 1.07998 * 122.61708 * 0.03722 * 20 19 16 33 33 H 1.07999 * 121.56265 * 180.20506 * 21 20 19 34 34 H 1.08009 * 119.96396 * 179.70886 * 24 13 12 35 35 H 1.08002 * 120.03287 * 180.27094 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1086 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8203 0.3252 14 6 4.3850 -7.0816 0.4428 15 7 4.6566 -7.3575 1.8557 16 16 5.2096 -8.8488 2.3168 17 8 5.4115 -8.7851 3.7219 18 8 4.3578 -9.8020 1.6964 19 6 6.8027 -9.0605 1.5944 20 6 7.9953 -8.7162 2.1284 21 6 9.0866 -9.0030 1.3371 22 7 8.8477 -9.5543 0.1834 23 16 7.1669 -9.7423 0.0573 24 6 2.1874 -5.8890 0.3331 25 6 1.4366 -4.7344 0.2311 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4846 -0.0008 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0904 30 1 3.8311 -7.9145 0.0100 31 1 4.5163 -6.6654 2.5208 32 1 8.0864 -8.2548 3.1006 33 1 10.0927 -8.7771 1.6582 34 1 1.6954 -6.8462 0.4233 35 1 0.3580 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363939441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:57 Heat of formation + Delta-G solvation = -55.710500 kcal Electronic energy + Delta-G solvation = -23450.548366 eV Core-core repulsion = 19667.343683 eV Total energy + Delta-G solvation = -3783.204683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81339 -39.86107 -38.72433 -38.36024 -37.09289 -35.94779 -34.24716 -32.61070 -31.79635 -30.97023 -27.59056 -26.54750 -25.94589 -23.61870 -22.36870 -22.09837 -20.52458 -19.92942 -19.74011 -18.94991 -18.54873 -17.91226 -17.23508 -16.50350 -16.36759 -16.06850 -15.79885 -15.56549 -15.43831 -15.36933 -15.10825 -14.45815 -14.32335 -14.31082 -13.92799 -13.56977 -13.48072 -13.39646 -13.27171 -13.03362 -12.95985 -12.54492 -12.45520 -12.32854 -12.14050 -12.05966 -11.65425 -11.43372 -11.17992 -10.81038 -10.57942 -9.90045 -9.77503 -8.98319 -8.47410 -6.15457 -1.02821 -0.74031 0.15745 0.59510 0.61535 0.68200 1.23711 1.36541 1.44080 1.54461 1.97337 2.17737 2.56372 2.84169 3.17204 3.33545 3.51562 3.81948 3.89520 3.95500 4.06056 4.21579 4.43250 4.45466 4.47419 4.60966 4.74341 4.82115 4.91671 5.07487 5.16216 5.30671 5.33587 5.56589 5.72053 5.77201 6.00505 6.03296 6.20996 6.97739 7.78200 8.75917 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.002395 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.707067 B =11689.865777 C =12252.447438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.411 4.411 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.120 3.880 11 C -0.245 4.245 12 C -0.045 4.045 13 C -0.175 4.175 14 C 0.169 3.831 15 N -1.099 6.099 16 S 2.746 3.254 17 O -0.970 6.970 18 O -0.970 6.970 19 C -0.797 4.797 20 C -0.049 4.049 21 C 0.074 3.926 22 N -0.457 5.457 23 S 0.359 5.641 24 C -0.049 4.049 25 C -0.208 4.208 26 H 0.272 0.728 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.429 0.571 32 H 0.198 0.802 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.169 -17.211 3.273 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.069 3.931 11 C -0.265 4.265 12 C -0.064 4.064 13 C -0.177 4.177 14 C 0.044 3.956 15 N -0.863 5.863 16 S 2.830 3.170 17 O -0.960 6.960 18 O -0.960 6.960 19 C -1.010 5.010 20 C -0.089 4.089 21 C -0.123 4.123 22 N -0.280 5.280 23 S 0.514 5.486 24 C -0.067 4.067 25 C -0.227 4.227 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.266 0.734 32 H 0.215 0.785 33 H 0.248 0.752 34 H 0.165 0.835 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.331 -18.763 1.569 26.278 hybrid contribution 0.506 2.302 1.464 2.775 sum 18.836 -16.461 3.034 25.199 Atomic orbital electron populations 1.70191 1.08092 1.28758 1.48851 1.26593 0.96811 1.02809 0.95885 0.84528 0.78384 0.74867 0.78439 1.17191 1.19541 1.19522 1.21883 0.92597 0.81316 1.52954 0.87763 1.83952 1.36168 1.12729 1.80949 1.20013 0.91810 0.87850 0.93380 1.21272 0.92889 1.00296 1.12001 1.21004 1.00134 0.90466 0.94772 1.19453 0.93257 0.94369 1.10629 1.20195 0.99692 0.95573 0.80093 1.55440 1.81428 1.32971 1.16431 1.00413 0.71917 0.72544 0.72110 1.93582 1.86390 1.86495 1.29521 1.93599 1.63576 1.60551 1.78258 1.37012 1.26741 1.21248 1.15964 1.21749 0.87920 0.96074 1.03163 1.23762 1.03771 0.95793 0.88939 1.76630 1.09383 1.19574 1.22417 1.84171 1.01374 1.52739 1.10355 1.20971 0.93539 0.96984 0.95225 1.20461 1.00027 0.90605 1.11625 0.91858 0.86203 0.83425 0.88982 0.88617 0.73351 0.78502 0.75176 0.83481 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.67 21.61 0.30 -55.28 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 3 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 4 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.41 -23.12 9.49 67.92 0.64 -22.47 16 8 H 0.11 5.31 5.20 -2.91 -0.02 5.29 16 9 O -0.23 -13.48 9.76 -22.79 -0.22 -13.70 16 10 C 0.12 5.64 6.65 22.58 0.15 5.79 16 11 C -0.25 -9.66 9.17 22.39 0.21 -9.46 16 12 C -0.05 -1.30 9.69 22.25 0.22 -1.08 16 13 C -0.17 -4.50 5.28 -19.83 -0.10 -4.61 16 14 C 0.17 3.02 6.34 85.63 0.54 3.56 16 15 N -1.10 -18.30 5.99 -190.80 -1.14 -19.45 16 16 S 2.75 50.58 5.90 -56.49 -0.33 50.25 16 17 O -0.97 -22.17 17.89 -128.00 -2.29 -24.46 16 18 O -0.97 -23.19 17.46 -128.00 -2.23 -25.42 16 19 C -0.80 -12.09 6.61 67.10 0.44 -11.65 16 20 C -0.05 -0.52 10.05 21.45 0.22 -0.31 16 21 C 0.07 0.75 11.27 84.85 0.96 1.70 16 22 N -0.46 -7.31 12.09 -62.60 -0.76 -8.06 16 23 S 0.36 5.85 23.67 -56.49 -1.34 4.51 16 24 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 25 C -0.21 -8.27 9.99 22.39 0.22 -8.05 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 27 H 0.12 4.85 5.64 -2.91 -0.02 4.83 16 28 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.10 1.57 7.70 -2.39 -0.02 1.55 16 31 H 0.43 6.69 8.64 -96.74 -0.84 5.85 16 32 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.23 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -78.15 340.90 -1.49 -79.64 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.33 Total: 17.03 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 4.17 Total: -48.65 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.60 Total: -82.79 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -4.75 Total: -63.58 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 56.43 SS G_CDS: -1.67 Total: 54.76 kcal Total: -78.15 -1.49 -79.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363939441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.933 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds