Wall clock time and date at job start Sat Apr 11 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47007 * 275.40721 * 3 2 1 5 5 H 1.48499 * 109.47327 * 35.41104 * 3 2 1 6 6 H 1.48500 * 109.46913 * 155.41417 * 3 2 1 7 7 C 1.39942 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99665 * 341.73041 * 7 2 1 9 9 C 1.41395 * 119.99950 * 161.72626 * 7 2 1 10 10 C 1.40741 * 120.23637 * 150.46751 * 9 7 2 11 11 C 1.37608 * 119.77169 * 180.24784 * 10 9 7 12 12 C 1.38634 * 120.25697 * 359.47631 * 11 10 9 13 13 S 1.76209 * 119.75091 * 180.27525 * 12 11 10 14 14 O 1.42102 * 106.39936 * 228.53578 * 13 12 11 15 15 O 1.42097 * 106.40189 * 1.46233 * 13 12 11 16 16 N 1.65598 * 107.21521 * 114.99959 * 13 12 11 17 17 C 1.46500 * 120.00114 * 64.99912 * 16 13 12 18 18 C 1.50700 * 109.47345 * 164.99755 * 17 16 13 19 19 C 1.34856 * 125.89146 * 264.69536 * 18 17 16 20 20 C 1.40890 * 107.41439 * 179.88665 * 19 18 17 21 21 C 1.34844 * 107.42096 * 0.37371 * 20 19 18 22 22 N 1.36338 * 125.88923 * 85.00075 * 18 17 16 23 23 H 0.97000 * 125.64034 * 359.95502 * 22 18 17 24 24 C 1.38723 * 120.48974 * 0.29725 * 12 11 10 25 25 Cl 1.73608 * 119.88599 * 179.97438 * 24 12 11 26 26 C 1.37755 * 120.22519 * 359.95904 * 24 12 11 27 27 H 0.97004 * 120.00355 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.11764 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.86798 * 179.74720 * 11 10 9 30 30 H 0.96996 * 119.99984 * 244.99471 * 16 13 12 31 31 H 1.09002 * 109.47150 * 284.99983 * 17 16 13 32 32 H 1.09005 * 109.47413 * 44.99876 * 17 16 13 33 33 H 1.08000 * 126.29095 * 0.02562 * 19 18 17 34 34 H 1.07997 * 126.28883 * 180.13193 * 20 19 18 35 35 H 1.08003 * 125.89537 * 179.73627 * 21 20 19 36 36 H 1.07999 * 120.13555 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5014 2.6170 0.8112 6 1 3.5922 1.4099 0.5825 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1235 0.2942 9 6 3.3685 -1.2429 -0.3834 10 6 4.2363 -2.2087 0.1596 11 6 5.5597 -2.2269 -0.2170 12 6 6.0373 -1.3053 -1.1359 13 16 7.7328 -1.3454 -1.6141 14 8 8.2105 -0.0111 -1.5103 15 8 8.3198 -2.4374 -0.9198 16 7 7.7792 -1.7349 -3.2229 17 6 7.2140 -0.8173 -4.2154 18 6 7.6964 -1.2044 -5.5896 19 6 8.7565 -0.6751 -6.2336 20 6 8.8560 -1.3195 -7.4825 21 6 7.8481 -2.2122 -7.5576 22 7 7.1329 -2.1461 -6.3986 23 1 6.3524 -2.6809 -6.1850 24 6 5.1903 -0.3517 -1.6815 25 17 5.8051 0.7953 -2.8306 26 6 3.8631 -0.3119 -1.3148 27 1 -0.4851 0.8401 0.0004 28 1 3.8657 -2.9309 0.8720 29 1 6.2279 -2.9648 0.2018 30 1 8.1807 -2.5705 -3.5082 31 1 6.1259 -0.8728 -4.1833 32 1 7.5327 0.2009 -3.9919 33 1 9.4104 0.0988 -5.8596 34 1 9.6002 -1.1303 -8.2419 35 1 7.6424 -2.8662 -8.3921 36 1 3.2049 0.4309 -1.7407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364813833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:00 Heat of formation + Delta-G solvation = -9.613558 kcal Electronic energy + Delta-G solvation = -24769.913733 eV Core-core repulsion = 20986.664257 eV Total energy + Delta-G solvation = -3783.249476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11794 -38.24844 -36.79166 -36.09914 -35.27850 -35.01494 -34.15750 -31.08029 -30.95131 -29.92249 -29.42061 -26.04782 -25.06671 -22.26132 -21.38619 -20.66630 -20.28504 -19.17509 -18.13416 -17.98618 -17.46693 -16.63210 -15.90802 -15.70769 -14.81493 -14.72293 -14.32132 -14.16301 -13.83281 -13.62593 -13.53604 -13.27360 -13.07899 -12.87239 -12.77334 -12.36488 -12.13955 -11.81939 -11.60896 -11.49811 -11.46776 -11.24762 -11.05617 -10.82350 -10.63614 -10.36510 -10.14670 -9.82857 -9.63207 -9.17233 -8.90368 -8.36392 -8.15675 -8.02592 -7.52086 -5.13609 0.98732 1.72009 2.17840 2.23990 2.54181 2.82333 2.93307 2.95209 3.03442 3.27895 3.59313 3.63233 3.92493 4.27309 4.76492 4.86167 5.01605 5.09393 5.30615 5.42728 5.59370 5.62386 5.73007 5.99030 6.08800 6.16304 6.19858 6.26620 6.29499 6.57716 6.68872 6.83414 6.94463 7.02258 7.08145 7.17919 7.27979 7.52559 7.57817 7.74875 8.05009 8.19192 9.45378 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.004175 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.812222 B = 6704.778981 C = 7387.495545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.236 1.236 7 C -0.402 4.402 8 H 0.105 0.895 9 C 0.117 3.883 10 C -0.218 4.218 11 C 0.013 3.987 12 C -0.795 4.795 13 S 2.699 3.301 14 O -0.965 6.965 15 O -0.980 6.980 16 N -1.119 6.119 17 C 0.181 3.819 18 C 0.006 3.994 19 C -0.181 4.181 20 C -0.205 4.205 21 C -0.012 4.012 22 N -0.552 5.552 23 H 0.415 0.585 24 C 0.095 3.905 25 Cl -0.091 7.091 26 C -0.238 4.238 27 H 0.297 0.703 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.413 0.587 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -1.873 -10.036 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.159 1.159 7 C -0.427 4.427 8 H 0.123 0.877 9 C 0.113 3.887 10 C -0.238 4.238 11 C -0.007 4.007 12 C -0.888 4.888 13 S 2.794 3.206 14 O -0.955 6.955 15 O -0.971 6.971 16 N -0.876 5.876 17 C 0.055 3.945 18 C -0.108 4.108 19 C -0.207 4.207 20 C -0.230 4.230 21 C -0.144 4.144 22 N -0.147 5.147 23 H 0.251 0.749 24 C 0.067 3.933 25 Cl -0.062 7.062 26 C -0.259 4.259 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.246 0.754 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.037 -1.409 -9.491 12.516 hybrid contribution -0.886 0.124 -0.394 0.977 sum 7.151 -1.285 -9.886 12.269 Atomic orbital electron populations 1.69653 1.08361 1.31764 1.28991 1.26412 0.94949 1.02602 0.90515 0.86345 0.81811 0.78793 0.80124 1.18398 1.20586 1.15866 1.19900 0.92722 0.96620 1.33472 0.87737 1.17768 0.92835 0.89958 0.88174 1.21105 0.92889 1.04387 1.05411 1.20255 0.95719 0.93310 0.91404 1.29216 1.23659 1.13430 1.22537 1.01249 0.74388 0.73374 0.71571 1.93553 1.79548 1.37247 1.85109 1.93499 1.77000 1.55160 1.71398 1.55740 1.75666 1.31574 1.24666 1.20599 0.98174 0.93710 0.82011 1.20497 0.98712 0.96874 0.94675 1.20814 0.99647 1.04271 0.95926 1.20905 1.01626 1.01327 0.99114 1.21842 0.96633 1.04805 0.91094 1.42038 1.26089 1.32187 1.14426 0.74870 1.20046 0.93500 0.89240 0.90557 1.98337 1.86714 1.62119 1.59002 1.20996 0.93474 1.06154 1.05246 0.89209 0.86766 0.85890 0.75406 0.90164 0.87964 0.84596 0.84820 0.82008 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.72 13.93 55.55 0.77 -16.95 16 2 C 0.08 1.84 5.40 -17.34 -0.09 1.75 16 3 Si 0.91 18.70 24.52 -169.99 -4.17 14.53 16 4 H -0.26 -5.19 6.71 56.52 0.38 -4.81 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.24 -5.14 6.86 56.52 0.39 -4.75 16 7 C -0.40 -9.43 9.57 -37.74 -0.36 -9.79 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.08 16 9 C 0.12 2.66 5.10 -106.83 -0.55 2.11 16 10 C -0.22 -4.57 9.79 -38.87 -0.38 -4.95 16 11 C 0.01 0.27 9.52 -39.67 -0.38 -0.11 16 12 C -0.79 -16.02 5.91 -39.26 -0.23 -16.25 16 13 S 2.70 49.28 5.44 -107.50 -0.58 48.69 16 14 O -0.96 -19.70 15.94 -57.17 -0.91 -20.61 16 15 O -0.98 -19.33 16.94 -57.17 -0.97 -20.30 16 16 N -1.12 -16.31 5.99 -11.65 -0.07 -16.38 16 17 C 0.18 2.56 4.63 -5.19 -0.02 2.54 16 18 C 0.01 0.08 6.56 -81.79 -0.54 -0.45 16 19 C -0.18 -2.29 10.77 -39.78 -0.43 -2.72 16 20 C -0.20 -2.27 10.86 -39.78 -0.43 -2.70 16 21 C -0.01 -0.11 11.94 -16.75 -0.20 -0.31 16 22 N -0.55 -5.80 6.07 -9.12 -0.06 -5.86 16 23 H 0.41 3.48 8.96 -40.82 -0.37 3.12 16 24 C 0.09 1.97 6.08 -39.58 -0.24 1.73 16 25 Cl -0.09 -1.65 20.53 -51.86 -1.06 -2.71 16 26 C -0.24 -5.26 6.95 -38.84 -0.27 -5.53 16 27 H 0.30 6.13 8.30 -40.82 -0.34 5.79 16 28 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.12 2.23 7.31 -52.49 -0.38 1.84 16 30 H 0.41 5.17 8.64 -34.47 -0.30 4.87 16 31 H 0.08 1.14 6.14 -51.93 -0.32 0.82 16 32 H 0.10 1.53 5.86 -51.93 -0.30 1.23 16 33 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 2.55 4.73 -52.49 -0.25 2.30 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -28.11 323.36 -9.50 -37.61 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.20 Total: 11.79 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -4.12 Total: -34.69 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.65 Total: -39.19 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.88 Total: -40.91 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.17 Total: 14.53 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.58 Total: 48.69 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -1.06 Total: -2.71 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.11 -9.50 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364813833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.000 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds