Wall clock time and date at job start Sat Apr 11 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48505 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46831 * 299.99744 * 3 2 1 6 6 H 1.48500 * 109.46929 * 59.99834 * 3 2 1 7 7 C 1.40025 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00476 * 196.33856 * 7 2 1 9 9 C 1.41318 * 120.00143 * 16.33560 * 7 2 1 10 10 C 1.40588 * 119.78919 * 192.57670 * 9 7 2 11 11 C 1.38340 * 119.14956 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.68160 * 359.97438 * 11 10 9 13 13 C 1.39750 * 119.49235 * 0.02562 * 12 11 10 14 14 N 1.38825 * 119.58720 * 179.97438 * 13 12 11 15 15 S 1.65600 * 120.00121 * 195.49838 * 14 13 12 16 16 O 1.42097 * 106.40295 * 308.21613 * 15 14 13 17 17 O 1.42101 * 106.40031 * 175.29568 * 15 14 13 18 18 C 1.76195 * 107.21928 * 61.76004 * 15 14 13 19 19 C 1.38261 * 119.96785 * 84.45103 * 18 15 14 20 20 C 1.38215 * 120.07329 * 180.25775 * 19 18 15 21 21 C 1.38417 * 119.99614 * 359.48760 * 20 19 18 22 22 F 1.35103 * 120.03311 * 180.23027 * 21 20 19 23 23 C 1.38650 * 119.92803 * 0.49199 * 21 20 19 24 24 F 1.35101 * 120.03336 * 179.79358 * 23 21 20 25 25 C 1.38210 * 119.96492 * 264.43019 * 18 15 14 26 26 N 1.31980 * 120.83329 * 0.25876 * 13 12 11 27 27 H 0.96999 * 119.99582 * 4.64979 * 1 2 3 28 28 H 1.08003 * 120.42197 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.66077 * 179.97438 * 11 10 9 30 30 H 1.08000 * 120.25459 * 180.02562 * 12 11 10 31 31 H 0.97007 * 120.00283 * 15.49595 * 14 13 12 32 32 H 1.08002 * 119.96099 * 359.97097 * 19 18 15 33 33 H 1.07995 * 120.00335 * 179.74561 * 20 19 18 34 34 H 1.08001 * 119.99985 * 359.97287 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2126 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0548 -1.2315 0.2636 9 6 1.3438 -2.4120 -0.3431 10 6 1.9615 -3.6493 -0.0903 11 6 1.3000 -4.8151 -0.4326 12 6 0.0454 -4.7218 -1.0150 13 6 -0.5163 -3.4622 -1.2410 14 7 -1.7723 -3.3665 -1.8246 15 16 -2.2881 -1.9212 -2.4470 16 8 -2.1054 -0.9546 -1.4216 17 8 -3.5440 -2.1744 -3.0616 18 6 -1.1781 -1.4861 -3.7444 19 6 -1.3689 -1.9943 -5.0160 20 6 -0.4965 -1.6587 -6.0341 21 6 0.5635 -0.8045 -5.7836 22 9 1.4141 -0.4722 -6.7793 23 6 0.7546 -0.2945 -4.5085 24 9 1.7909 0.5361 -4.2607 25 6 -0.1179 -0.6368 -3.4900 26 7 0.1347 -2.3624 -0.9118 27 1 -0.4849 0.8373 -0.0681 28 1 2.9399 -3.6892 0.3653 29 1 1.7520 -5.7788 -0.2497 30 1 -0.4939 -5.6156 -1.2919 31 1 -2.3478 -4.1462 -1.8678 32 1 -2.1979 -2.6580 -5.2128 33 1 -0.6442 -2.0596 -7.0259 34 1 0.0296 -0.2398 -2.4964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364982452.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:06 Heat of formation + Delta-G solvation = -91.062477 kcal Electronic energy + Delta-G solvation = -28027.076618 eV Core-core repulsion = 23688.498571 eV Total energy + Delta-G solvation = -4338.578047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.44949 -48.45027 -38.78340 -38.55574 -36.65000 -35.20392 -34.76187 -33.27257 -31.02707 -30.61576 -30.48522 -28.94213 -25.63294 -23.50602 -23.06237 -21.95589 -21.50229 -19.20750 -18.25562 -18.02965 -17.52938 -17.09962 -16.70469 -16.26091 -16.23142 -15.87672 -14.92352 -14.86702 -14.67525 -14.48315 -14.36588 -14.10631 -13.93045 -13.37840 -13.11198 -12.90139 -12.69751 -12.35154 -12.26483 -11.75750 -11.65255 -11.51909 -11.25031 -11.11902 -11.08308 -10.79656 -10.66917 -10.62339 -10.37584 -10.11350 -9.25480 -9.18205 -8.84828 -8.32020 -7.83642 -7.35144 -6.59919 -4.57004 0.47832 0.90823 1.05765 2.66972 2.85792 3.07732 3.10417 3.13359 3.17093 3.47507 3.76031 3.94258 4.14221 4.30678 4.46320 4.58672 4.79969 5.19693 5.27363 5.39227 5.44843 5.72603 5.75716 5.87001 5.91430 6.01773 6.21061 6.36851 6.65397 6.66655 6.76059 6.91100 7.14748 7.38693 7.46913 7.62183 7.96232 8.15591 8.57447 8.79324 9.76816 10.21807 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.007428 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.138894 B = 3768.800489 C = 5049.429408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.676 5.676 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.427 4.427 8 H 0.087 0.913 9 C 0.292 3.708 10 C -0.293 4.293 11 C -0.033 4.033 12 C -0.338 4.338 13 C 0.383 3.617 14 N -1.032 6.032 15 S 2.687 3.313 16 O -0.879 6.879 17 O -0.978 6.978 18 C -0.652 4.652 19 C -0.009 4.009 20 C -0.159 4.159 21 C 0.114 3.886 22 F -0.126 7.126 23 C 0.042 3.958 24 F -0.123 7.123 25 C 0.007 3.993 26 N -0.529 5.529 27 H 0.287 0.713 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.421 0.579 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -2.571 -8.389 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.295 5.295 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.105 0.895 9 C 0.168 3.832 10 C -0.317 4.317 11 C -0.057 4.057 12 C -0.366 4.366 13 C 0.144 3.856 14 N -0.782 5.782 15 S 2.773 3.227 16 O -0.868 6.868 17 O -0.968 6.968 18 C -0.737 4.737 19 C -0.028 4.028 20 C -0.179 4.179 21 C 0.093 3.907 22 F -0.104 7.104 23 C 0.021 3.979 24 F -0.102 7.102 25 C -0.013 4.013 26 N -0.250 5.250 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.256 0.744 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.726 -0.892 -8.242 9.089 hybrid contribution 1.551 -0.477 -0.594 1.728 sum -2.175 -1.369 -8.836 9.202 Atomic orbital electron populations 1.69969 1.06154 1.29681 1.23667 1.26040 0.94910 1.00685 0.94364 0.86645 0.81513 0.82279 0.78979 1.18257 1.19297 1.19770 1.19576 0.97183 0.90308 1.38682 0.89452 1.18009 0.85938 0.91991 0.87272 1.21640 1.02758 0.93247 1.14022 1.20677 0.93529 0.96903 0.94629 1.20583 1.00052 0.94969 1.21023 1.17971 0.84434 0.91646 0.91512 1.53102 1.24531 1.30427 1.70171 1.02552 0.72350 0.73868 0.73904 1.93778 1.83989 1.57191 1.51822 1.93565 1.39001 1.85626 1.78630 1.31152 1.16646 1.10590 1.15286 1.20824 0.96724 0.94901 0.90370 1.21056 0.94930 1.00214 1.01653 1.17967 0.90698 0.98029 0.84004 1.91533 1.68829 1.90796 1.59283 1.17790 0.90001 0.97038 0.93060 1.91557 1.55117 1.68798 1.94682 1.21426 0.88523 0.91011 1.00344 1.67850 1.11247 1.25256 1.20658 0.90145 0.88037 0.88268 0.88503 0.74367 0.83174 0.83216 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.64 9.21 55.55 0.51 -16.13 16 2 C 0.07 1.64 5.13 -17.34 -0.09 1.55 16 3 Si 0.88 17.94 29.59 -169.99 -5.03 12.91 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.43 -10.53 9.10 -37.74 -0.34 -10.88 16 8 H 0.09 2.05 7.90 -52.49 -0.41 1.64 16 9 C 0.29 7.26 6.45 -84.99 -0.55 6.72 16 10 C -0.29 -6.65 9.83 -38.66 -0.38 -7.03 16 11 C -0.03 -0.67 10.15 -39.40 -0.40 -1.07 16 12 C -0.34 -6.81 9.97 -38.87 -0.39 -7.20 16 13 C 0.38 8.15 7.28 -155.32 -1.13 7.02 16 14 N -1.03 -18.06 5.82 31.14 0.18 -17.88 16 15 S 2.69 48.54 5.41 -107.50 -0.58 47.96 16 16 O -0.88 -19.06 14.18 -57.17 -0.81 -19.87 16 17 O -0.98 -17.48 17.43 -57.17 -1.00 -18.48 16 18 C -0.65 -11.24 5.81 -39.58 -0.23 -11.47 16 19 C -0.01 -0.12 9.52 -39.58 -0.38 -0.50 16 20 C -0.16 -2.07 10.02 -39.52 -0.40 -2.47 16 21 C 0.11 1.77 7.31 -39.36 -0.29 1.48 16 22 F -0.13 -1.91 17.18 2.25 0.04 -1.87 16 23 C 0.04 0.77 7.31 -39.37 -0.29 0.48 16 24 F -0.12 -2.38 17.18 2.25 0.04 -2.34 16 25 C 0.01 0.13 8.87 -39.53 -0.35 -0.22 16 26 N -0.53 -12.68 5.47 -10.33 -0.06 -12.74 16 27 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 28 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.42 5.81 8.85 -34.47 -0.31 5.51 16 32 H 0.15 1.66 7.75 -52.49 -0.41 1.25 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.19 4.02 5.91 -52.49 -0.31 3.71 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -29.14 320.47 -9.34 -38.49 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.26 Total: 8.71 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -5.21 Total: -23.59 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.64 Total: -46.75 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.81 Total: -38.35 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.58 Total: 47.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.14 -9.34 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364982452.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.575 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds