Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48499 * 109.47006 * 268.76447 * 3 2 1 5 5 H 1.48497 * 109.46897 * 28.76209 * 3 2 1 6 6 H 1.48498 * 109.47232 * 148.76396 * 3 2 1 7 7 C 1.40028 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99505 * 347.93366 * 7 2 1 9 9 C 1.41314 * 120.00595 * 167.93734 * 7 2 1 10 10 C 1.40594 * 119.78007 * 327.23856 * 9 7 2 11 11 C 1.38348 * 119.14410 * 180.20647 * 10 9 7 12 12 C 1.38637 * 118.68331 * 359.52892 * 11 10 9 13 13 C 1.39759 * 119.48814 * 0.25150 * 12 11 10 14 14 N 1.38829 * 119.58180 * 180.02562 * 13 12 11 15 15 S 1.65603 * 119.99736 * 213.48809 * 14 13 12 16 16 O 1.42101 * 106.39943 * 180.58509 * 15 14 13 17 17 O 1.42099 * 106.40371 * 313.50755 * 15 14 13 18 18 C 1.76194 * 107.21694 * 67.05001 * 15 14 13 19 19 C 1.38206 * 120.00122 * 111.67691 * 18 15 14 20 20 C 1.38435 * 119.99980 * 179.76722 * 19 18 15 21 21 F 1.35095 * 120.00100 * 180.23885 * 20 19 18 22 22 C 1.38477 * 119.99583 * 0.53242 * 20 19 18 23 23 C 1.38156 * 120.00251 * 359.72493 * 22 20 19 24 24 C 1.38428 * 120.00091 * 291.95508 * 18 15 14 25 25 F 1.35103 * 119.99743 * 359.97438 * 24 18 15 26 26 N 1.31974 * 120.83238 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99638 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42997 * 359.97438 * 10 9 7 29 29 H 1.08004 * 120.65429 * 179.80326 * 11 10 9 30 30 H 1.07990 * 120.25741 * 180.27640 * 12 11 10 31 31 H 0.97002 * 119.99727 * 33.49117 * 14 13 12 32 32 H 1.07998 * 119.99955 * 0.02867 * 19 18 15 33 33 H 1.08003 * 119.99476 * 179.70291 * 22 20 19 34 34 H 1.08002 * 119.99938 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5151 2.0313 -1.3997 5 1 1.4260 2.6601 0.6737 6 1 3.5257 1.4479 0.7260 7 6 2.0076 -1.2126 -0.0005 8 1 1.4854 -2.1377 0.1946 9 6 3.3973 -1.2261 -0.2563 10 6 3.9548 -0.2809 -1.1352 11 6 5.3162 -0.3088 -1.3795 12 6 6.0878 -1.2658 -0.7384 13 6 5.4757 -2.1755 0.1281 14 7 6.2465 -3.1343 0.7715 15 16 5.6116 -4.6304 1.0892 16 8 6.6288 -5.3644 1.7569 17 8 4.3217 -4.4096 1.6429 18 6 5.3578 -5.4291 -0.4607 19 6 6.1271 -6.5233 -0.8084 20 6 5.9244 -7.1537 -2.0241 21 9 6.6732 -8.2262 -2.3620 22 6 4.9582 -6.6812 -2.8964 23 6 4.1928 -5.5842 -2.5510 24 6 4.3917 -4.9571 -1.3325 25 9 3.6430 -3.8844 -0.9947 26 7 4.1742 -2.1340 0.3433 27 1 -0.4850 0.8401 -0.0004 28 1 3.3278 0.4550 -1.6165 29 1 5.7696 0.4037 -2.0527 30 1 7.1536 -1.3078 -0.9071 31 1 7.1569 -2.9278 1.0349 32 1 6.8836 -6.8890 -0.1300 33 1 4.8034 -7.1702 -3.8469 34 1 3.4395 -5.2155 -3.2315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365463519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -72.244164 kcal Electronic energy + Delta-G solvation = -27702.044357 eV Core-core repulsion = 23364.282333 eV Total energy + Delta-G solvation = -4337.762023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.12645 -48.79273 -38.98156 -38.85612 -36.92846 -35.54446 -35.06097 -33.35245 -31.81059 -31.24967 -30.11818 -29.45336 -25.70496 -24.07710 -22.96580 -22.28959 -21.54460 -19.52713 -18.52116 -18.26934 -17.53110 -17.36917 -17.01616 -16.32409 -16.00703 -15.92143 -15.63697 -15.31398 -14.90168 -14.74472 -14.45426 -14.37397 -14.31553 -13.51515 -13.15999 -12.97879 -12.68386 -12.60397 -12.21507 -12.08097 -12.00273 -11.92297 -11.78582 -11.63519 -11.39319 -11.06388 -10.73946 -10.39743 -10.23716 -10.03795 -9.83729 -9.39108 -8.80101 -8.58991 -8.10663 -7.56788 -7.02898 -4.70235 0.25287 0.58494 0.78180 2.28032 2.45414 2.86042 3.01555 3.14201 3.19764 3.22468 3.70814 3.87614 3.95176 4.03824 4.31231 4.37361 4.54602 4.75446 4.98266 5.04682 5.21169 5.50438 5.51208 5.59534 5.68179 5.76295 5.86384 6.07424 6.29779 6.34375 6.51957 6.61742 6.98812 7.09646 7.25970 7.36257 7.69743 8.28687 8.37390 8.60379 9.40191 9.98673 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004470 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.493008 B = 6262.849886 C = 6674.729926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.085 3.915 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.407 4.407 8 H 0.104 0.896 9 C 0.282 3.718 10 C -0.294 4.294 11 C -0.031 4.031 12 C -0.306 4.306 13 C 0.366 3.634 14 N -1.034 6.034 15 S 2.690 3.310 16 O -0.964 6.964 17 O -0.893 6.893 18 C -0.695 4.695 19 C -0.029 4.029 20 C 0.056 3.944 21 F -0.134 7.134 22 C -0.071 4.071 23 C -0.151 4.151 24 C 0.203 3.797 25 F -0.075 7.075 26 N -0.531 5.531 27 H 0.289 0.711 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.425 0.575 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 -7.484 -5.898 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.172 1.172 7 C -0.438 4.438 8 H 0.122 0.878 9 C 0.157 3.843 10 C -0.317 4.317 11 C -0.056 4.056 12 C -0.334 4.334 13 C 0.129 3.871 14 N -0.786 5.786 15 S 2.776 3.224 16 O -0.954 6.954 17 O -0.882 6.882 18 C -0.779 4.779 19 C -0.049 4.049 20 C 0.036 3.964 21 F -0.113 7.113 22 C -0.090 4.090 23 C -0.171 4.171 24 C 0.182 3.818 25 F -0.052 7.052 26 N -0.251 5.251 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.262 0.738 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.218 -8.421 -4.556 13.291 hybrid contribution 1.173 1.372 -1.356 2.258 sum 10.391 -7.049 -5.912 13.879 Atomic orbital electron populations 1.69574 1.07934 1.30543 1.34055 1.26097 0.94907 1.01465 0.91115 0.86286 0.80582 0.79545 0.79203 1.19339 1.21683 1.17203 1.19272 0.89459 0.96152 1.38962 0.87805 1.18260 0.92806 0.85836 0.87432 1.22000 0.95516 1.06802 1.07395 1.20816 0.93538 0.95397 0.95804 1.20876 0.99363 1.04723 1.08446 1.17939 0.89637 0.89101 0.90437 1.52975 1.25119 1.27708 1.72839 1.02470 0.74460 0.72273 0.73209 1.93569 1.59877 1.70929 1.71065 1.93744 1.38596 1.83043 1.72839 1.31129 1.08036 1.12442 1.26312 1.20757 0.96915 0.92128 0.95122 1.17588 0.95031 0.88242 0.95549 1.91520 1.74750 1.52619 1.92426 1.21269 0.92948 0.95270 0.99488 1.21233 1.02365 0.96940 0.96514 1.17373 0.87908 0.84219 0.92325 1.92014 1.72637 1.49207 1.91325 1.68047 1.02200 1.29550 1.25271 0.90026 0.86716 0.87344 0.87505 0.73820 0.82091 0.83159 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 13.92 55.55 0.77 -19.69 16 2 C 0.09 2.16 5.46 -17.35 -0.09 2.07 16 3 Si 0.92 19.96 24.45 -169.99 -4.16 15.80 16 4 H -0.27 -5.48 6.48 56.52 0.37 -5.11 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.25 -5.62 6.91 56.52 0.39 -5.23 16 7 C -0.41 -10.93 9.81 -37.74 -0.37 -11.30 16 8 H 0.10 3.03 8.06 -52.49 -0.42 2.60 16 9 C 0.28 7.07 5.16 -85.00 -0.44 6.64 16 10 C -0.29 -6.63 7.13 -38.65 -0.28 -6.91 16 11 C -0.03 -0.60 10.15 -39.39 -0.40 -1.00 16 12 C -0.31 -5.76 10.03 -38.87 -0.39 -6.15 16 13 C 0.37 7.49 6.29 -155.32 -0.98 6.51 16 14 N -1.03 -17.26 5.76 31.14 0.18 -17.08 16 15 S 2.69 46.79 5.44 -107.50 -0.58 46.20 16 16 O -0.96 -16.34 16.97 -57.17 -0.97 -17.31 16 17 O -0.89 -19.52 15.62 -57.17 -0.89 -20.41 16 18 C -0.69 -10.91 5.89 -39.52 -0.23 -11.14 16 19 C -0.03 -0.39 9.53 -39.52 -0.38 -0.76 16 20 C 0.06 0.67 7.30 -39.42 -0.29 0.39 16 21 F -0.13 -1.56 17.27 2.25 0.04 -1.52 16 22 C -0.07 -0.76 10.02 -39.52 -0.40 -1.16 16 23 C -0.15 -1.95 10.02 -39.53 -0.40 -2.34 16 24 C 0.20 3.38 7.06 -39.43 -0.28 3.10 16 25 F -0.07 -1.55 11.48 2.25 0.03 -1.52 16 26 N -0.53 -12.84 5.88 -10.33 -0.06 -12.91 16 27 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 28 H 0.12 2.53 4.47 -52.49 -0.23 2.30 16 29 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.43 5.43 8.93 -34.48 -0.31 5.12 16 32 H 0.16 1.85 7.33 -52.49 -0.38 1.46 16 33 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -31.42 310.45 -8.10 -39.52 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -2.22 Total: 6.30 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.91 Total: -22.07 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.89 Total: -49.68 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.86 Total: -37.72 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.06 Total: -3.05 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.16 Total: 15.80 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.58 Total: 46.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.42 -8.10 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365463519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.720 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds