Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48499 * 109.47006 * 268.76447 * 3 2 1 5 5 H 1.48497 * 109.46897 * 28.76209 * 3 2 1 6 6 H 1.48498 * 109.47232 * 148.76396 * 3 2 1 7 7 C 1.40028 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99505 * 347.93366 * 7 2 1 9 9 C 1.41314 * 120.00595 * 167.93734 * 7 2 1 10 10 C 1.40594 * 119.78007 * 327.23856 * 9 7 2 11 11 C 1.38348 * 119.14410 * 180.20647 * 10 9 7 12 12 C 1.38637 * 118.68331 * 359.52892 * 11 10 9 13 13 C 1.39759 * 119.48814 * 0.25150 * 12 11 10 14 14 N 1.38829 * 119.58180 * 180.02562 * 13 12 11 15 15 S 1.65603 * 119.99736 * 213.48809 * 14 13 12 16 16 O 1.42101 * 106.39943 * 180.58509 * 15 14 13 17 17 O 1.42099 * 106.40371 * 313.50755 * 15 14 13 18 18 C 1.76194 * 107.21694 * 67.05001 * 15 14 13 19 19 C 1.38206 * 120.00122 * 111.67691 * 18 15 14 20 20 C 1.38435 * 119.99980 * 179.76722 * 19 18 15 21 21 F 1.35095 * 120.00100 * 180.23885 * 20 19 18 22 22 C 1.38477 * 119.99583 * 0.53242 * 20 19 18 23 23 C 1.38156 * 120.00251 * 359.72493 * 22 20 19 24 24 C 1.38428 * 120.00091 * 291.95508 * 18 15 14 25 25 F 1.35103 * 119.99743 * 359.97438 * 24 18 15 26 26 N 1.31974 * 120.83238 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99638 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42997 * 359.97438 * 10 9 7 29 29 H 1.08004 * 120.65429 * 179.80326 * 11 10 9 30 30 H 1.07990 * 120.25741 * 180.27640 * 12 11 10 31 31 H 0.97002 * 119.99727 * 33.49117 * 14 13 12 32 32 H 1.07998 * 119.99955 * 0.02867 * 19 18 15 33 33 H 1.08003 * 119.99476 * 179.70291 * 22 20 19 34 34 H 1.08002 * 119.99938 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5151 2.0313 -1.3997 5 1 1.4260 2.6601 0.6737 6 1 3.5257 1.4479 0.7260 7 6 2.0076 -1.2126 -0.0005 8 1 1.4854 -2.1377 0.1946 9 6 3.3973 -1.2261 -0.2563 10 6 3.9548 -0.2809 -1.1352 11 6 5.3162 -0.3088 -1.3795 12 6 6.0878 -1.2658 -0.7384 13 6 5.4757 -2.1755 0.1281 14 7 6.2465 -3.1343 0.7715 15 16 5.6116 -4.6304 1.0892 16 8 6.6288 -5.3644 1.7569 17 8 4.3217 -4.4096 1.6429 18 6 5.3578 -5.4291 -0.4607 19 6 6.1271 -6.5233 -0.8084 20 6 5.9244 -7.1537 -2.0241 21 9 6.6732 -8.2262 -2.3620 22 6 4.9582 -6.6812 -2.8964 23 6 4.1928 -5.5842 -2.5510 24 6 4.3917 -4.9571 -1.3325 25 9 3.6430 -3.8844 -0.9947 26 7 4.1742 -2.1340 0.3433 27 1 -0.4850 0.8401 -0.0004 28 1 3.3278 0.4550 -1.6165 29 1 5.7696 0.4037 -2.0527 30 1 7.1536 -1.3078 -0.9071 31 1 7.1569 -2.9278 1.0349 32 1 6.8836 -6.8890 -0.1300 33 1 4.8034 -7.1702 -3.8469 34 1 3.4395 -5.2155 -3.2315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365463519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -94.855722 kcal Electronic energy + Delta-G solvation = -27703.024868 eV Core-core repulsion = 23364.282333 eV Total energy + Delta-G solvation = -4338.742534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.15236 -50.08431 -40.65745 -39.93024 -38.37894 -37.05728 -36.66948 -35.10899 -32.94759 -32.86248 -31.22370 -31.14687 -27.46832 -25.15208 -24.09271 -23.89081 -23.26349 -20.86527 -20.08962 -19.65532 -18.81427 -18.57703 -18.26777 -17.94396 -17.46967 -17.12725 -16.96773 -16.62093 -16.48435 -16.21375 -16.00254 -15.54932 -15.46350 -14.84130 -14.69995 -14.38285 -14.26111 -13.84921 -13.61564 -13.55081 -13.37470 -13.31412 -13.20620 -13.16352 -13.00800 -12.76454 -12.22783 -12.05238 -11.78553 -11.72368 -11.12386 -10.87523 -10.30684 -9.87669 -9.80254 -9.24161 -8.87210 -6.63036 -0.97911 -0.65061 -0.28338 0.59545 0.81346 1.27489 1.43457 1.50653 1.63760 1.99675 2.12291 2.40635 2.58997 2.83250 2.96326 3.21482 3.38294 3.53998 3.64508 3.82103 3.89514 4.16299 4.28871 4.45036 4.60325 4.62873 4.64539 4.67325 4.68090 4.82239 5.08353 5.26449 5.48458 5.55151 5.66383 5.79906 6.02241 6.29353 6.55484 6.72645 7.68483 8.21911 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004470 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.493008 B = 6262.849886 C = 6674.729926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.049 3.951 3 Si 0.975 3.025 4 H -0.240 1.240 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.051 0.949 9 C 0.274 3.726 10 C -0.307 4.307 11 C -0.026 4.026 12 C -0.279 4.279 13 C 0.354 3.646 14 N -1.024 6.024 15 S 2.702 3.298 16 O -0.963 6.963 17 O -0.949 6.949 18 C -0.700 4.700 19 C -0.031 4.031 20 C 0.066 3.934 21 F -0.127 7.127 22 C -0.047 4.047 23 C -0.147 4.147 24 C 0.163 3.837 25 F -0.110 7.110 26 N -0.562 5.562 27 H 0.297 0.703 28 H 0.119 0.881 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.444 0.556 32 H 0.177 0.823 33 H 0.195 0.805 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.136 -7.426 -8.421 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.167 4.167 3 Si 0.798 3.202 4 H -0.164 1.164 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.069 0.931 9 C 0.147 3.853 10 C -0.330 4.330 11 C -0.051 4.051 12 C -0.306 4.306 13 C 0.118 3.882 14 N -0.779 5.779 15 S 2.792 3.208 16 O -0.953 6.953 17 O -0.939 6.939 18 C -0.787 4.787 19 C -0.051 4.051 20 C 0.045 3.955 21 F -0.105 7.105 22 C -0.066 4.066 23 C -0.166 4.166 24 C 0.142 3.858 25 F -0.088 7.088 26 N -0.281 5.281 27 H 0.108 0.892 28 H 0.137 0.863 29 H 0.174 0.826 30 H 0.172 0.828 31 H 0.284 0.716 32 H 0.195 0.805 33 H 0.212 0.788 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.125 -8.371 -7.046 17.088 hybrid contribution 0.286 1.043 -0.655 1.264 sum 13.411 -7.328 -7.701 17.113 Atomic orbital electron populations 1.69617 1.09159 1.31728 1.36622 1.26803 0.95563 1.04010 0.90324 0.85422 0.78609 0.75751 0.80466 1.16413 1.20571 1.18524 1.19129 0.91047 0.95107 1.43490 0.93114 1.18252 0.92191 0.87000 0.87837 1.22097 0.97317 1.06435 1.07111 1.21355 0.92167 0.95876 0.95668 1.21469 1.01619 1.02189 1.05299 1.18267 0.88879 0.90013 0.91075 1.52763 1.25646 1.26978 1.72498 1.01705 0.73270 0.72285 0.73583 1.93558 1.59289 1.70734 1.71722 1.93694 1.41247 1.83921 1.75015 1.30673 1.09255 1.13631 1.25174 1.20945 0.96767 0.91294 0.96122 1.17630 0.94867 0.87913 0.95071 1.91554 1.74550 1.52156 1.92245 1.21693 0.90752 0.93599 1.00546 1.21484 1.02822 0.97059 0.95243 1.17869 0.88907 0.84694 0.94362 1.91940 1.73763 1.51169 1.91889 1.67940 1.04208 1.29753 1.26238 0.89216 0.86324 0.82570 0.82801 0.71589 0.80540 0.78767 0.80925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.31 13.92 21.84 0.30 -46.01 16 2 C 0.05 2.62 5.46 85.29 0.47 3.08 16 3 Si 0.97 41.53 24.45 68.60 1.68 43.21 16 4 H -0.24 -9.04 6.48 99.48 0.64 -8.40 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.26 -11.49 6.91 99.48 0.69 -10.81 16 7 C -0.45 -26.48 9.81 23.46 0.23 -26.25 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 C 0.27 14.24 5.16 40.19 0.21 14.45 16 10 C -0.31 -13.49 7.13 22.87 0.16 -13.33 16 11 C -0.03 -0.91 10.15 22.39 0.23 -0.68 16 12 C -0.28 -9.37 10.03 22.73 0.23 -9.14 16 13 C 0.35 14.10 6.29 133.40 0.84 14.94 16 14 N -1.02 -33.00 5.76 -55.38 -0.32 -33.32 16 15 S 2.70 94.88 5.44 -56.49 -0.31 94.57 16 16 O -0.96 -31.92 16.97 -128.00 -2.17 -34.09 16 17 O -0.95 -44.10 15.62 -128.00 -2.00 -46.10 16 18 C -0.70 -21.58 5.89 22.31 0.13 -21.45 16 19 C -0.03 -0.76 9.53 22.31 0.21 -0.55 16 20 C 0.07 1.34 7.30 22.37 0.16 1.51 16 21 F -0.13 -2.43 17.27 44.97 0.78 -1.65 16 22 C -0.05 -0.84 10.02 22.31 0.22 -0.61 16 23 C -0.15 -3.52 10.02 22.31 0.22 -3.29 16 24 C 0.16 5.44 7.06 22.37 0.16 5.60 16 25 F -0.11 -4.84 11.48 44.97 0.52 -4.32 16 26 N -0.56 -28.04 5.88 -186.59 -1.10 -29.14 16 27 H 0.30 14.46 8.29 -92.71 -0.77 13.69 16 28 H 0.12 5.06 4.47 -2.91 -0.01 5.04 16 29 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.15 3.76 8.06 -2.92 -0.02 3.73 16 31 H 0.44 10.26 8.93 -96.74 -0.86 9.40 16 32 H 0.18 3.62 7.33 -2.91 -0.02 3.59 16 33 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -75.46 310.45 1.11 -74.35 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.25 Total: 18.23 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 3.47 Total: -35.74 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -1.11 Total: -108.46 kcal Atomic # 8 Polarization: -76.02 SS G_CDS: -4.17 Total: -80.19 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.29 Total: -5.97 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.68 Total: 43.21 kcal Atomic # 16 Polarization: 94.88 SS G_CDS: -0.31 Total: 94.57 kcal Total: -75.46 1.11 -74.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365463519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.505 kcal (2) G-P(sol) polarization free energy of solvation -75.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds