Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36228 * 117.00163 * 2 1 4 4 C 1.38667 * 122.58748 * 0.02562 * 3 2 1 5 5 C 1.33432 * 114.88996 * 179.97438 * 4 3 2 6 6 S 1.75869 * 109.65508 * 0.02562 * 5 4 3 7 7 C 1.33631 * 122.58915 * 179.97438 * 3 2 1 8 8 S 1.76200 * 125.19430 * 0.02562 * 7 3 2 9 9 O 1.42105 * 106.40151 * 293.53795 * 8 7 3 10 10 O 1.42092 * 106.40259 * 66.46047 * 8 7 3 11 11 N 1.65599 * 107.21752 * 180.02562 * 8 7 3 12 12 C 1.38822 * 120.00439 * 64.99641 * 11 8 7 13 13 C 1.39796 * 119.58637 * 180.02562 * 12 11 8 14 14 C 1.38596 * 119.49060 * 179.97438 * 13 12 11 15 15 C 1.38386 * 118.68221 * 359.97438 * 14 13 12 16 16 C 1.40561 * 119.14832 * 359.97438 * 15 14 13 17 17 C 1.41317 * 119.78279 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00379 * 0.02562 * 17 16 15 19 19 C 1.40030 * 119.99713 * 180.02562 * 17 16 15 20 20 N 1.30741 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46896 * 89.99864 * 21 19 17 23 23 H 1.48497 * 109.47185 * 210.00325 * 21 19 17 24 24 H 1.48499 * 109.46973 * 330.00306 * 21 19 17 25 25 N 1.31959 * 119.58126 * 359.73046 * 12 11 8 26 26 H 1.08998 * 109.46971 * 60.00240 * 1 2 3 27 27 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47352 * 300.00003 * 1 2 3 29 29 H 1.08008 * 122.55410 * 0.02562 * 4 3 2 30 30 H 1.08000 * 125.17408 * 180.26703 * 5 4 3 31 31 H 0.97004 * 120.00081 * 245.00370 * 11 8 7 32 32 H 1.07993 * 120.25468 * 359.94975 * 13 12 11 33 33 H 1.07997 * 120.66106 * 180.02562 * 14 13 12 34 34 H 1.07995 * 120.43205 * 179.97438 * 15 14 13 35 35 H 0.96999 * 119.99573 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 0.0005 5 6 2.1051 3.5067 0.0010 6 16 3.8035 3.0502 0.0000 7 6 3.3774 1.3439 0.0005 8 16 4.5283 0.0097 0.0006 9 8 4.3777 -0.6500 1.2502 10 8 4.3786 -0.6494 -1.2493 11 7 6.0462 0.6717 0.0020 12 6 6.4787 1.4144 1.0922 13 6 7.7615 1.9698 1.0839 14 6 8.1910 2.7114 2.1732 15 6 7.3295 2.8805 3.2428 16 6 6.0513 2.2980 3.1912 17 6 5.1609 2.4618 4.2762 18 1 5.4631 3.0333 5.1413 19 6 3.8866 1.8829 4.2297 20 7 3.5210 1.1906 3.1827 21 14 2.7093 2.1000 5.6637 22 1 1.8907 3.3206 5.4516 23 1 1.8180 0.9159 5.7560 24 1 3.4836 2.2360 6.9236 25 7 5.6714 1.5922 2.1208 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2662 2.4501 0.0014 30 1 1.7335 4.5207 0.0055 31 1 6.6333 0.5407 -0.7591 32 1 8.4131 1.8218 0.2355 33 1 9.1781 3.1493 2.1866 34 1 7.6351 3.4527 4.1062 35 1 2.6384 0.7894 3.1507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365463974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -46.262016 kcal Electronic energy + Delta-G solvation = -26192.397556 eV Core-core repulsion = 22409.602590 eV Total energy + Delta-G solvation = -3782.794966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83708 -40.21291 -37.98074 -36.78983 -36.64417 -36.35053 -34.88948 -32.22160 -31.06794 -30.56264 -27.75041 -27.29051 -25.16466 -23.58588 -23.14537 -21.26691 -20.44582 -19.70259 -19.63404 -18.25391 -17.94123 -17.57722 -16.89266 -16.59429 -16.45268 -16.23369 -16.02117 -15.60579 -15.50504 -14.72947 -14.70583 -14.64034 -13.87966 -13.80097 -13.56389 -13.19321 -13.03695 -12.90735 -12.73376 -12.70459 -12.66192 -12.49902 -12.26221 -12.16726 -12.04733 -11.93772 -11.74634 -11.63145 -10.97570 -10.03794 -9.89781 -9.46314 -9.01170 -8.86892 -8.10592 -6.34671 -0.44538 -0.21394 0.59823 0.94364 1.04737 1.28412 1.44127 1.54466 1.56234 1.62151 2.10009 2.29526 2.49598 2.80333 3.01796 3.82450 3.85740 3.94718 4.08778 4.23190 4.31749 4.38246 4.53085 4.67296 4.74464 4.85415 4.86601 5.02029 5.09250 5.21054 5.25363 5.52611 5.78044 5.94230 6.00848 6.15786 6.34294 6.39814 6.89820 7.09504 8.16253 8.56195 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.010273 B = 0.007938 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.841534 B = 3526.563642 C = 4855.229656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.215 3.785 4 C -0.219 4.219 5 C -0.156 4.156 6 S 0.234 5.766 7 C -0.799 4.799 8 S 2.737 3.263 9 O -0.938 6.938 10 O -0.998 6.998 11 N -1.032 6.032 12 C 0.364 3.636 13 C -0.337 4.337 14 C -0.031 4.031 15 C -0.315 4.315 16 C 0.259 3.741 17 C -0.451 4.451 18 H 0.087 0.913 19 C 0.025 3.975 20 N -0.687 5.687 21 Si 0.960 3.040 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.260 1.260 25 N -0.528 5.528 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.181 0.819 30 H 0.208 0.792 31 H 0.435 0.565 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 4.883 -7.189 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.154 3.846 4 C -0.251 4.251 5 C -0.294 4.294 6 S 0.498 5.502 7 C -1.003 5.003 8 S 2.826 3.174 9 O -0.927 6.927 10 O -0.989 6.989 11 N -0.784 5.784 12 C 0.126 3.874 13 C -0.364 4.364 14 C -0.055 4.055 15 C -0.338 4.338 16 C 0.135 3.865 17 C -0.482 4.482 18 H 0.105 0.895 19 C -0.201 4.201 20 N -0.305 5.305 21 Si 0.782 3.218 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.184 1.184 25 N -0.249 5.249 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.198 0.802 30 H 0.225 0.775 31 H 0.273 0.727 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.160 4.101 -7.198 10.323 hybrid contribution -1.000 0.058 0.476 1.110 sum -7.160 4.159 -6.721 10.665 Atomic orbital electron populations 1.23488 0.75195 1.06029 1.03049 1.86143 1.24863 1.25979 1.88248 1.17313 0.89318 0.86225 0.91736 1.20449 1.02988 0.89982 1.11729 1.26281 0.96798 1.04293 1.02010 1.83977 1.05568 0.92038 1.68608 1.33806 1.12262 1.19858 1.34369 1.00367 0.72101 0.72626 0.72297 1.93592 1.84389 1.71330 1.43423 1.93507 1.86318 1.72863 1.46196 1.53071 1.33253 1.66413 1.25637 1.18445 0.91523 0.90295 0.87175 1.20970 0.97166 1.14585 1.03688 1.21032 0.98271 0.94290 0.91922 1.21785 0.97230 1.12989 1.01797 1.18427 0.90803 0.87419 0.89893 1.19799 0.97846 1.28782 1.01791 0.89479 1.26713 1.00171 0.94273 0.98963 1.70247 1.17377 1.16450 1.26470 0.85535 0.78440 0.78337 0.79486 1.18557 1.20665 1.18432 1.68074 1.33255 1.22622 1.00920 0.90159 0.86283 0.91359 0.80235 0.77539 0.72705 0.85472 0.84634 0.87319 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.92 113.37 1.12 1.49 16 2 O -0.34 -12.23 10.28 -96.16 -0.99 -13.22 16 3 C 0.22 8.00 6.60 21.33 0.14 8.14 16 4 C -0.22 -6.30 9.16 21.28 0.19 -6.10 16 5 C -0.16 -4.34 11.22 66.73 0.75 -3.60 16 6 S 0.23 8.44 21.53 -56.49 -1.22 7.22 16 7 C -0.80 -33.10 5.79 66.77 0.39 -32.71 16 8 S 2.74 124.11 5.23 -56.49 -0.30 123.81 16 9 O -0.94 -50.17 15.60 -128.00 -2.00 -52.17 16 10 O -1.00 -45.96 18.02 -128.00 -2.31 -48.27 16 11 N -1.03 -41.96 5.68 -55.37 -0.31 -42.27 16 12 C 0.36 16.61 6.51 133.42 0.87 17.48 16 13 C -0.34 -13.69 9.95 22.73 0.23 -13.47 16 14 C -0.03 -1.24 10.15 22.39 0.23 -1.02 16 15 C -0.31 -14.46 9.83 22.87 0.22 -14.24 16 16 C 0.26 13.49 6.55 40.18 0.26 13.76 16 17 C -0.45 -23.25 9.14 23.46 0.21 -23.03 16 18 H 0.09 4.23 7.85 -2.91 -0.02 4.21 16 19 C 0.03 1.26 5.50 85.29 0.47 1.73 16 20 N -0.69 -35.69 9.86 21.84 0.22 -35.48 16 21 Si 0.96 38.00 29.56 68.60 2.03 40.02 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 N -0.53 -27.08 5.04 -186.58 -0.94 -28.02 16 26 H 0.08 1.36 7.84 -2.39 -0.02 1.35 16 27 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 29 H 0.18 3.65 6.91 -2.91 -0.02 3.63 16 30 H 0.21 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.44 14.09 8.82 -96.74 -0.85 13.24 16 32 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.27 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -72.58 330.37 -0.42 -73.00 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.31 Total: 26.93 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 5.09 Total: -51.56 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -1.04 Total: -105.77 kcal Atomic # 8 Polarization: -108.36 SS G_CDS: -5.29 Total: -113.65 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 132.54 SS G_CDS: -1.51 Total: 131.03 kcal Total: -72.58 -0.42 -73.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365463974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.739 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds