Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99702 * 3 2 1 6 6 H 1.48503 * 109.47185 * 59.99710 * 3 2 1 7 7 C 1.40025 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00052 * 191.82195 * 7 2 1 9 9 C 1.41316 * 120.00131 * 11.82188 * 7 2 1 10 10 C 1.40586 * 119.78739 * 191.09402 * 9 7 2 11 11 C 1.38345 * 119.15018 * 180.20583 * 10 9 7 12 12 C 1.38642 * 118.67836 * 359.52221 * 11 10 9 13 13 C 1.39751 * 119.49196 * 0.25025 * 12 11 10 14 14 N 1.38827 * 119.58640 * 180.02562 * 13 12 11 15 15 S 1.65610 * 119.99922 * 217.08107 * 14 13 12 16 16 O 1.42099 * 106.39846 * 180.64787 * 15 14 13 17 17 O 1.42103 * 106.39784 * 313.56725 * 15 14 13 18 18 C 1.76195 * 107.21631 * 67.10818 * 15 14 13 19 19 C 1.38260 * 119.99852 * 110.84718 * 18 15 14 20 20 C 1.38210 * 120.07000 * 179.72008 * 19 18 15 21 21 C 1.38259 * 120.07146 * 0.54636 * 20 19 18 22 22 C 1.38372 * 119.99896 * 359.72553 * 21 20 19 23 23 F 1.35093 * 120.03657 * 179.97438 * 22 21 20 24 24 C 1.38362 * 120.00462 * 291.10842 * 18 15 14 25 25 F 1.35101 * 120.03154 * 359.97438 * 24 18 15 26 26 N 1.31984 * 120.83115 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.42578 * 359.97407 * 10 9 7 29 29 H 1.07998 * 120.66240 * 179.79889 * 11 10 9 30 30 H 1.07995 * 120.25360 * 180.27892 * 12 11 10 31 31 H 0.96997 * 120.00113 * 37.07216 * 14 13 12 32 32 H 1.08000 * 119.96246 * 359.96295 * 19 18 15 33 33 H 1.08002 * 119.96348 * 180.27281 * 20 19 18 34 34 H 1.08000 * 120.00093 * 179.75172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0705 -1.2224 0.1922 9 6 1.3236 -2.4236 -0.2496 10 6 1.9699 -3.6510 -0.0206 11 6 1.2894 -4.8285 -0.2740 12 6 -0.0153 -4.7564 -0.7376 13 6 -0.6050 -3.5059 -0.9411 14 7 -1.9115 -3.4315 -1.4047 15 16 -2.3452 -2.2406 -2.4708 16 8 -3.7290 -2.4244 -2.7363 17 8 -1.8059 -1.0292 -1.9601 18 6 -1.5012 -2.5624 -3.9836 19 6 -2.2112 -2.9684 -5.0984 20 6 -1.5514 -3.2156 -6.2874 21 6 -0.1787 -3.0683 -6.3616 22 6 0.5354 -2.6676 -5.2462 23 9 1.8768 -2.5240 -5.3177 24 6 -0.1274 -2.4140 -4.0546 25 9 0.5676 -2.0220 -2.9645 26 7 0.0641 -2.3947 -0.6971 27 1 -0.4850 0.8400 -0.0004 28 1 2.9859 -3.6743 0.3450 29 1 1.7634 -5.7849 -0.1097 30 1 -0.5717 -5.6597 -0.9394 31 1 -2.5702 -4.0770 -1.1043 32 1 -3.2829 -3.0887 -5.0410 33 1 -2.1082 -3.5284 -7.1584 34 1 0.3362 -3.2657 -7.2903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365464200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -68.187284 kcal Electronic energy + Delta-G solvation = -28489.189960 eV Core-core repulsion = 24151.603856 eV Total energy + Delta-G solvation = -4337.586104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.23157 -48.25499 -38.80782 -38.43040 -36.59574 -35.15193 -34.60654 -33.10975 -31.26693 -30.47437 -30.32809 -28.81244 -25.49507 -23.79958 -22.84935 -21.78925 -21.33481 -19.26200 -18.16405 -17.90258 -17.35489 -17.08750 -16.67467 -16.28134 -16.04908 -15.64903 -14.87759 -14.80661 -14.63678 -14.55231 -14.34302 -14.12687 -13.91886 -13.06071 -13.01030 -12.64146 -12.30498 -12.27386 -12.19885 -11.89345 -11.60985 -11.41065 -11.28697 -11.08343 -10.99250 -10.68555 -10.53688 -10.52738 -10.23587 -9.93556 -9.50839 -9.13083 -8.69963 -8.14245 -7.57478 -7.31743 -6.40768 -4.41843 0.44876 0.87285 0.92539 2.74763 2.98964 3.05865 3.17449 3.21570 3.24136 3.49687 3.79557 4.04930 4.09161 4.38878 4.51606 4.69915 4.75659 4.86206 5.22661 5.36995 5.62759 5.63839 5.80621 5.87352 5.93980 5.94658 6.09300 6.46621 6.67036 6.74884 6.80329 7.02134 7.28384 7.51457 7.57425 7.71765 8.08665 8.26746 8.72667 8.94461 9.97929 10.38769 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.006177 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.817018 B = 4531.576185 C = 4770.893983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.669 5.669 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.289 4.289 11 C -0.042 4.042 12 C -0.332 4.332 13 C 0.357 3.643 14 N -1.031 6.031 15 S 2.680 3.320 16 O -0.974 6.974 17 O -0.867 6.867 18 C -0.695 4.695 19 C -0.009 4.009 20 C -0.136 4.136 21 C -0.078 4.078 22 C 0.037 3.963 23 F -0.124 7.124 24 C 0.183 3.817 25 F -0.065 7.065 26 N -0.481 5.481 27 H 0.280 0.720 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.420 0.580 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -5.278 -10.449 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.287 5.287 2 C -0.162 4.162 3 Si 0.721 3.279 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.103 0.897 9 C 0.156 3.844 10 C -0.312 4.312 11 C -0.066 4.066 12 C -0.361 4.361 13 C 0.118 3.882 14 N -0.784 5.784 15 S 2.764 3.236 16 O -0.965 6.965 17 O -0.856 6.856 18 C -0.778 4.778 19 C -0.028 4.028 20 C -0.155 4.155 21 C -0.097 4.097 22 C 0.016 3.984 23 F -0.103 7.103 24 C 0.161 3.839 25 F -0.043 7.043 26 N -0.199 5.199 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.256 0.744 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.705 -3.441 -10.459 11.974 hybrid contribution 1.341 -0.845 -0.146 1.592 sum -3.364 -4.286 -10.605 11.923 Atomic orbital electron populations 1.69925 1.06650 1.28706 1.23385 1.25989 0.94855 1.00726 0.94670 0.86444 0.80931 0.82009 0.78522 1.18532 1.19794 1.20033 1.19572 0.95697 0.89823 1.40218 0.89673 1.18121 0.86509 0.91941 0.87853 1.21688 1.01289 0.93401 1.14836 1.20658 0.93562 0.96748 0.95645 1.20737 0.97773 0.95324 1.22217 1.18034 0.83938 0.91193 0.95038 1.52848 1.16911 1.50711 1.57931 1.02909 0.72899 0.74816 0.72927 1.93540 1.30505 1.86663 1.85752 1.93838 1.77746 1.39323 1.74673 1.31455 1.03349 1.18521 1.24481 1.20934 1.00713 0.90692 0.90494 1.21115 0.93381 1.02340 0.98687 1.21318 0.94977 0.96289 0.97159 1.17766 0.78436 1.07602 0.94586 1.91552 1.28367 1.93643 1.96736 1.17332 0.89038 0.93533 0.84020 1.92025 1.77858 1.85759 1.48612 1.68281 1.09387 1.24451 1.17780 0.90855 0.88211 0.88468 0.88749 0.74442 0.82781 0.83744 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -17.99 10.69 55.55 0.59 -17.39 16 2 C 0.07 1.73 5.43 -17.34 -0.09 1.64 16 3 Si 0.90 19.14 29.58 -169.99 -5.03 14.11 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.42 -11.17 9.12 -37.74 -0.34 -11.52 16 8 H 0.09 2.12 7.87 -52.48 -0.41 1.71 16 9 C 0.28 7.44 5.85 -85.00 -0.50 6.94 16 10 C -0.29 -6.92 9.83 -38.66 -0.38 -7.30 16 11 C -0.04 -0.91 10.15 -39.39 -0.40 -1.30 16 12 C -0.33 -7.14 10.04 -38.87 -0.39 -7.53 16 13 C 0.36 8.17 6.17 -155.31 -0.96 7.21 16 14 N -1.03 -19.68 5.75 31.14 0.18 -19.50 16 15 S 2.68 51.48 5.44 -107.50 -0.58 50.90 16 16 O -0.97 -18.07 16.97 -57.17 -0.97 -19.04 16 17 O -0.87 -20.47 14.55 -57.17 -0.83 -21.30 16 18 C -0.70 -12.01 5.89 -39.53 -0.23 -12.24 16 19 C -0.01 -0.12 9.55 -39.58 -0.38 -0.50 16 20 C -0.14 -1.46 10.04 -39.58 -0.40 -1.86 16 21 C -0.08 -0.94 10.02 -39.52 -0.40 -1.33 16 22 C 0.04 0.61 7.31 -39.36 -0.29 0.32 16 23 F -0.12 -2.18 17.18 2.25 0.04 -2.14 16 24 C 0.18 3.54 7.07 -39.37 -0.28 3.26 16 25 F -0.07 -1.55 11.77 2.25 0.03 -1.53 16 26 N -0.48 -12.52 4.03 -10.33 -0.04 -12.56 16 27 H 0.28 7.06 8.29 -40.82 -0.34 6.72 16 28 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 29 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.42 6.46 8.95 -34.48 -0.31 6.16 16 32 H 0.15 1.70 7.33 -52.49 -0.38 1.32 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -32.74 316.49 -9.24 -41.97 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.35 Total: 5.92 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -5.03 Total: -24.21 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.73 Total: -49.45 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.80 Total: -40.34 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.67 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 51.48 SS G_CDS: -0.58 Total: 50.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.74 -9.24 -41.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365464200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.214 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds