Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99702 * 3 2 1 6 6 H 1.48503 * 109.47185 * 59.99710 * 3 2 1 7 7 C 1.40025 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00052 * 191.82195 * 7 2 1 9 9 C 1.41316 * 120.00131 * 11.82188 * 7 2 1 10 10 C 1.40586 * 119.78739 * 191.09402 * 9 7 2 11 11 C 1.38345 * 119.15018 * 180.20583 * 10 9 7 12 12 C 1.38642 * 118.67836 * 359.52221 * 11 10 9 13 13 C 1.39751 * 119.49196 * 0.25025 * 12 11 10 14 14 N 1.38827 * 119.58640 * 180.02562 * 13 12 11 15 15 S 1.65610 * 119.99922 * 217.08107 * 14 13 12 16 16 O 1.42099 * 106.39846 * 180.64787 * 15 14 13 17 17 O 1.42103 * 106.39784 * 313.56725 * 15 14 13 18 18 C 1.76195 * 107.21631 * 67.10818 * 15 14 13 19 19 C 1.38260 * 119.99852 * 110.84718 * 18 15 14 20 20 C 1.38210 * 120.07000 * 179.72008 * 19 18 15 21 21 C 1.38259 * 120.07146 * 0.54636 * 20 19 18 22 22 C 1.38372 * 119.99896 * 359.72553 * 21 20 19 23 23 F 1.35093 * 120.03657 * 179.97438 * 22 21 20 24 24 C 1.38362 * 120.00462 * 291.10842 * 18 15 14 25 25 F 1.35101 * 120.03154 * 359.97438 * 24 18 15 26 26 N 1.31984 * 120.83115 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.42578 * 359.97407 * 10 9 7 29 29 H 1.07998 * 120.66240 * 179.79889 * 11 10 9 30 30 H 1.07995 * 120.25360 * 180.27892 * 12 11 10 31 31 H 0.96997 * 120.00113 * 37.07216 * 14 13 12 32 32 H 1.08000 * 119.96246 * 359.96295 * 19 18 15 33 33 H 1.08002 * 119.96348 * 180.27281 * 20 19 18 34 34 H 1.08000 * 120.00093 * 179.75172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0705 -1.2224 0.1922 9 6 1.3236 -2.4236 -0.2496 10 6 1.9699 -3.6510 -0.0206 11 6 1.2894 -4.8285 -0.2740 12 6 -0.0153 -4.7564 -0.7376 13 6 -0.6050 -3.5059 -0.9411 14 7 -1.9115 -3.4315 -1.4047 15 16 -2.3452 -2.2406 -2.4708 16 8 -3.7290 -2.4244 -2.7363 17 8 -1.8059 -1.0292 -1.9601 18 6 -1.5012 -2.5624 -3.9836 19 6 -2.2112 -2.9684 -5.0984 20 6 -1.5514 -3.2156 -6.2874 21 6 -0.1787 -3.0683 -6.3616 22 6 0.5354 -2.6676 -5.2462 23 9 1.8768 -2.5240 -5.3177 24 6 -0.1274 -2.4140 -4.0546 25 9 0.5676 -2.0220 -2.9645 26 7 0.0641 -2.3947 -0.6971 27 1 -0.4850 0.8400 -0.0004 28 1 2.9859 -3.6743 0.3450 29 1 1.7634 -5.7849 -0.1097 30 1 -0.5717 -5.6597 -0.9394 31 1 -2.5702 -4.0770 -1.1043 32 1 -3.2829 -3.0887 -5.0410 33 1 -2.1082 -3.5284 -7.1584 34 1 0.3362 -3.2657 -7.2903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365464200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -90.175937 kcal Electronic energy + Delta-G solvation = -28490.143459 eV Core-core repulsion = 24151.603856 eV Total energy + Delta-G solvation = -4338.539603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.58344 -49.66331 -40.21832 -39.91486 -38.13964 -36.76561 -36.32776 -34.92116 -32.39748 -32.28216 -31.47395 -30.62539 -27.35644 -24.96534 -24.00110 -23.56330 -23.13519 -20.69511 -19.69850 -19.52461 -18.76709 -18.40317 -18.10737 -17.93892 -17.40821 -16.99041 -16.60264 -16.29796 -16.14636 -15.95987 -15.86183 -15.71737 -15.40000 -14.77522 -14.33603 -14.18142 -13.92373 -13.47880 -13.45748 -13.21980 -13.09112 -13.08111 -12.95113 -12.75114 -12.70171 -12.54109 -12.29572 -12.03854 -11.82016 -11.64161 -10.97080 -10.64123 -9.99099 -9.87126 -9.39453 -9.11898 -8.27486 -6.35885 -0.79991 -0.50040 -0.22890 0.93956 1.21733 1.39771 1.51435 1.53622 1.83781 2.15867 2.26602 2.58280 2.67644 2.90150 3.22527 3.40314 3.59658 3.77912 3.89594 4.01833 4.11174 4.27812 4.45159 4.57477 4.79331 4.80162 4.88760 4.94168 4.95065 5.04192 5.23295 5.50442 5.57468 5.73051 5.91090 5.94638 6.29805 6.37512 6.85273 7.04305 8.15269 8.52297 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.006177 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.817018 B = 4531.576185 C = 4770.893983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.085 0.915 9 C 0.254 3.746 10 C -0.312 4.312 11 C -0.040 4.040 12 C -0.324 4.324 13 C 0.345 3.655 14 N -1.026 6.026 15 S 2.692 3.308 16 O -0.972 6.972 17 O -0.920 6.920 18 C -0.704 4.704 19 C -0.007 4.007 20 C -0.107 4.107 21 C -0.056 4.056 22 C 0.015 3.985 23 F -0.139 7.139 24 C 0.133 3.867 25 F -0.106 7.106 26 N -0.501 5.501 27 H 0.278 0.722 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.435 0.565 32 H 0.180 0.820 33 H 0.204 0.796 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -7.293 -13.368 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.104 0.896 9 C 0.129 3.871 10 C -0.336 4.336 11 C -0.064 4.064 12 C -0.351 4.351 13 C 0.106 3.894 14 N -0.781 5.781 15 S 2.781 3.219 16 O -0.962 6.962 17 O -0.909 6.909 18 C -0.791 4.791 19 C -0.027 4.027 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.005 4.005 23 F -0.118 7.118 24 C 0.111 3.889 25 F -0.084 7.084 26 N -0.220 5.220 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.273 0.727 32 H 0.198 0.802 33 H 0.221 0.779 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.803 -5.486 -13.332 15.541 hybrid contribution 1.538 -0.468 0.541 1.696 sum -4.265 -5.954 -12.791 14.740 Atomic orbital electron populations 1.70041 1.08029 1.29127 1.25337 1.26738 0.95545 1.03727 0.93800 0.85435 0.79878 0.77712 0.78426 1.17680 1.20392 1.18769 1.19808 0.95956 0.90942 1.42683 0.89645 1.18514 0.87324 0.93046 0.88183 1.21879 1.01994 0.93723 1.15958 1.21090 0.93599 0.97561 0.94198 1.21198 0.97885 0.96067 1.19944 1.18360 0.84985 0.91272 0.94802 1.52703 1.16027 1.51009 1.58327 1.02119 0.72645 0.73876 0.73293 1.93529 1.30249 1.86540 1.85905 1.93791 1.78652 1.42088 1.76409 1.31030 1.02630 1.20889 1.24542 1.21456 1.01918 0.89167 0.90110 1.21799 0.92860 0.98699 0.99160 1.21917 0.95554 0.93147 0.96859 1.18200 0.78166 1.08960 0.95222 1.91507 1.29537 1.93962 1.96799 1.17835 0.90043 0.96726 0.84324 1.91918 1.78759 1.86938 1.50779 1.68240 1.09539 1.26225 1.17970 0.91170 0.87504 0.84599 0.85183 0.72657 0.80240 0.77869 0.78980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -40.40 10.69 21.84 0.23 -40.17 16 2 C 0.03 1.52 5.43 85.29 0.46 1.98 16 3 Si 0.96 41.39 29.58 68.60 2.03 43.42 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.46 -25.97 9.12 23.46 0.21 -25.76 16 8 H 0.09 4.53 7.87 -2.91 -0.02 4.51 16 9 C 0.25 14.20 5.85 40.19 0.24 14.44 16 10 C -0.31 -15.37 9.83 22.87 0.22 -15.14 16 11 C -0.04 -1.70 10.15 22.39 0.23 -1.47 16 12 C -0.32 -13.51 10.04 22.73 0.23 -13.28 16 13 C 0.34 16.03 6.17 133.40 0.82 16.85 16 14 N -1.03 -39.39 5.75 -55.38 -0.32 -39.71 16 15 S 2.69 105.02 5.44 -56.49 -0.31 104.71 16 16 O -0.97 -35.25 16.97 -128.00 -2.17 -37.43 16 17 O -0.92 -45.98 14.55 -128.00 -1.86 -47.84 16 18 C -0.70 -23.86 5.89 22.30 0.13 -23.72 16 19 C -0.01 -0.17 9.55 22.27 0.21 0.04 16 20 C -0.11 -1.66 10.04 22.27 0.22 -1.43 16 21 C -0.06 -1.09 10.02 22.31 0.22 -0.87 16 22 C 0.02 0.49 7.31 22.41 0.16 0.65 16 23 F -0.14 -4.93 17.18 44.97 0.77 -4.16 16 24 C 0.13 5.23 7.07 22.41 0.16 5.38 16 25 F -0.11 -5.38 11.77 44.97 0.53 -4.85 16 26 N -0.50 -27.30 4.03 -186.59 -0.75 -28.05 16 27 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 28 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.43 13.09 8.95 -96.74 -0.87 12.22 16 32 H 0.18 3.15 7.33 -2.91 -0.02 3.13 16 33 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -78.51 316.49 2.00 -76.51 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.32 Total: 19.90 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.53 Total: -42.34 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -0.84 Total: -107.93 kcal Atomic # 8 Polarization: -81.23 SS G_CDS: -4.04 Total: -85.27 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 1.30 Total: -9.01 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 105.02 SS G_CDS: -0.31 Total: 104.71 kcal Total: -78.51 2.00 -76.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365464200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.666 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds