Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31603 * 122.22606 * 2 1 4 4 C 1.29986 * 117.12263 * 180.26836 * 3 2 1 5 5 N 1.38751 * 125.36291 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99972 * 180.02562 * 5 4 3 7 7 O 1.21754 * 119.99530 * 354.81812 * 6 5 4 8 8 C 1.46319 * 120.00326 * 174.82679 * 6 5 4 9 9 C 1.36761 * 126.82356 * 4.99155 * 8 6 5 10 10 N 1.33226 * 107.95875 * 179.97438 * 9 8 6 11 11 C 1.31536 * 109.76195 * 359.97438 * 10 9 8 12 12 O 1.35210 * 125.49071 * 180.02562 * 11 10 9 13 13 N 1.34963 * 109.02303 * 359.76432 * 11 10 9 14 14 C 1.46496 * 126.54925 * 180.25020 * 13 11 10 15 15 S 1.76143 * 109.26893 * 359.97438 * 4 3 2 16 16 C 1.34646 * 122.22928 * 180.28141 * 2 1 3 17 17 S 1.76203 * 125.92756 * 359.73601 * 16 2 1 18 18 C 1.76196 * 100.00115 * 179.97438 * 17 16 2 19 19 H 1.08000 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.38421 * 119.99701 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99655 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46802 * 90.00088 * 22 20 18 24 24 H 1.48492 * 109.46826 * 209.99926 * 22 20 18 25 25 H 1.48500 * 109.47103 * 330.00120 * 22 20 18 26 26 H 1.08997 * 109.47576 * 269.71777 * 1 2 3 27 27 H 1.09005 * 109.46470 * 29.71683 * 1 2 3 28 28 H 1.08996 * 109.47112 * 149.71104 * 1 2 3 29 29 H 0.96995 * 120.00197 * 0.02562 * 5 4 3 30 30 H 1.08001 * 126.02205 * 359.93164 * 9 8 6 31 31 H 0.96698 * 114.00679 * 90.02245 * 12 11 10 32 32 H 1.08995 * 109.47282 * 274.96907 * 14 13 11 33 33 H 1.09004 * 109.46878 * 34.96814 * 14 13 11 34 34 H 1.08996 * 109.47251 * 154.96470 * 14 13 11 35 35 H 0.97001 * 120.00463 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1133 0.0000 4 6 3.5035 0.9977 -0.0054 5 7 4.4040 2.0533 -0.0058 6 6 5.7294 1.8084 -0.0123 7 8 6.1375 0.6649 0.0775 8 6 6.6776 2.9169 -0.1270 9 6 6.3805 4.2517 -0.1397 10 7 7.5235 4.9258 -0.2583 11 6 8.5321 4.0837 -0.3209 12 8 9.8343 4.4263 -0.4430 13 7 8.0581 2.8228 -0.2378 14 6 8.8492 1.5900 -0.2632 15 16 3.9346 -0.7102 -0.0106 16 6 2.2251 -1.1390 -0.0056 17 16 1.5696 -2.7745 -0.0071 18 6 3.0663 -3.7041 -0.0159 19 1 4.0185 -3.1945 -0.0191 20 6 3.0217 -5.0876 -0.0188 21 7 1.8596 -5.7096 -0.0144 22 14 4.6086 -6.0732 -0.0275 23 1 5.0348 -6.3375 1.3702 24 1 4.3865 -7.3627 -0.7295 25 1 5.6659 -5.3028 -0.7302 26 1 -0.3634 -0.0051 1.0276 27 1 -0.3632 0.8926 -0.5095 28 1 -0.3633 -0.8873 -0.5183 29 1 4.0798 2.9674 -0.0015 30 1 5.3932 4.6834 -0.0672 31 1 10.2892 4.5511 0.4011 32 1 9.0332 1.2977 -1.2969 33 1 9.8005 1.7583 0.2417 34 1 8.3025 0.7970 0.2469 35 1 1.8283 -6.6791 -0.0168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412484689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = 35.372249 kcal Electronic energy + Delta-G solvation = -23596.651184 eV Core-core repulsion = 19849.688896 eV Total energy + Delta-G solvation = -3746.962288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.045 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65169 -39.96241 -38.55632 -37.74907 -35.19461 -34.24107 -32.86971 -30.98300 -29.52335 -27.45482 -27.13643 -25.81802 -24.67613 -22.72061 -21.87179 -21.05659 -19.73017 -19.04145 -18.31255 -17.64052 -17.23722 -16.64834 -16.23231 -15.78864 -15.39859 -15.15127 -15.14768 -14.66014 -14.28919 -13.96311 -13.92979 -13.26950 -13.11326 -13.04258 -12.72593 -12.61704 -12.15635 -11.91281 -11.43703 -11.30680 -11.15390 -10.97318 -10.67210 -10.54540 -10.30952 -10.20483 -10.00850 -9.59429 -9.13357 -8.95563 -8.79635 -8.71135 -7.84834 -6.64630 -6.55310 -4.32391 0.68491 1.44670 1.67145 1.88146 2.22501 2.48923 2.87204 2.89908 3.03539 3.06337 3.13351 3.30232 3.37481 3.59952 3.93347 4.25665 4.40142 4.58989 4.78188 4.85146 4.92581 4.98808 5.14684 5.24707 5.59324 5.93493 5.95282 6.03027 6.07625 6.21453 6.40454 6.43009 6.87604 7.02237 7.09220 7.28341 7.36193 7.79427 7.99266 8.45384 8.83780 10.41095 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.003230 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.931976 B = 8665.681477 C =10574.267483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.020 3.980 3 N -0.469 5.469 4 C 0.186 3.814 5 N -0.599 5.599 6 C 0.590 3.410 7 O -0.511 6.511 8 C -0.072 4.072 9 C 0.061 3.939 10 N -0.486 5.486 11 C 0.400 3.600 12 O -0.438 6.438 13 N -0.424 5.424 14 C 0.061 3.939 15 S 0.201 5.799 16 C -0.249 4.249 17 S 0.154 5.846 18 C -0.557 4.557 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.862 5.862 22 Si 0.925 3.075 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.417 0.583 30 H 0.189 0.811 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 15.397 1.211 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.191 5.191 4 C -0.185 4.185 5 N -0.247 5.247 6 C 0.376 3.624 7 O -0.387 6.387 8 C -0.188 4.188 9 C -0.094 4.094 10 N -0.214 5.214 11 C 0.101 3.899 12 O -0.239 6.239 13 N -0.117 5.117 14 C -0.081 4.081 15 S 0.445 5.555 16 C -0.486 4.486 17 S 0.405 5.595 18 C -0.706 4.706 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.495 5.495 22 Si 0.749 3.251 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.189 1.189 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.255 0.745 30 H 0.206 0.794 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.403 14.444 0.613 17.811 hybrid contribution 1.463 -0.414 0.479 1.594 sum 11.866 14.030 1.091 18.407 Atomic orbital electron populations 1.20128 0.87943 1.02190 1.01873 1.19033 0.96730 0.84479 1.12021 1.65805 1.02674 1.32435 1.18139 1.23571 0.89774 0.92461 1.12666 1.41736 1.03476 1.08527 1.70941 1.16513 0.80974 0.87319 0.77594 1.90811 1.76935 1.21783 1.49166 1.20063 0.83237 0.95814 1.19698 1.22628 0.97751 0.88072 1.00995 1.70333 0.97726 1.31589 1.21780 1.20227 0.86563 0.79677 1.03444 1.84837 1.15530 1.88538 1.35001 1.45634 1.06162 1.08365 1.51516 1.22403 0.95965 0.84788 1.04935 1.85782 1.01888 0.95272 1.72572 1.28780 1.01172 1.06803 1.11839 1.83100 1.10949 0.84323 1.81105 1.23265 0.93604 0.94059 1.59672 0.89325 1.25028 0.98277 0.96676 0.92892 1.70008 1.24408 1.10392 1.44676 0.86030 0.81216 0.78807 0.79011 1.19603 1.20244 1.18939 0.91804 0.91825 0.91028 0.74475 0.79383 0.73683 0.89680 0.89456 0.86739 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.16 16 3 N -0.47 -9.04 10.55 -9.81 -0.10 -9.15 16 4 C 0.19 3.42 8.39 -87.30 -0.73 2.69 16 5 N -0.60 -8.37 5.38 -13.08 -0.07 -8.45 16 6 C 0.59 8.30 7.73 -13.01 -0.10 8.20 16 7 O -0.51 -8.64 12.31 5.14 0.06 -8.58 16 8 C -0.07 -0.83 6.92 -81.99 -0.57 -1.40 16 9 C 0.06 0.62 11.36 -17.48 -0.20 0.42 16 10 N -0.49 -5.59 11.22 -14.60 -0.16 -5.75 16 11 C 0.40 4.12 9.01 -89.58 -0.81 3.32 16 12 O -0.44 -3.28 13.53 -17.32 -0.23 -3.52 16 13 N -0.42 -4.48 3.20 -122.13 -0.39 -4.87 16 14 C 0.06 0.51 10.81 59.84 0.65 1.16 16 15 S 0.20 4.25 18.35 -107.50 -1.97 2.28 16 16 C -0.25 -5.57 6.67 29.46 0.20 -5.37 16 17 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 18 C -0.56 -14.82 9.26 30.80 0.29 -14.54 16 19 H 0.09 2.33 5.97 -52.49 -0.31 2.02 16 20 C 0.08 2.16 5.49 -17.49 -0.10 2.06 16 21 N -0.86 -23.34 13.22 55.47 0.73 -22.61 16 22 Si 0.92 20.20 29.55 -169.99 -5.02 15.17 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 29 H 0.42 4.34 7.75 -40.82 -0.32 4.02 16 30 H 0.19 1.24 7.45 -52.49 -0.39 0.85 16 31 H 0.41 0.83 9.06 45.56 0.41 1.24 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 1.18 6.18 -51.93 -0.32 0.86 16 35 H 0.28 6.97 8.32 -40.82 -0.34 6.63 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -33.45 336.44 -8.04 -41.48 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.14 Total: 1.66 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.58 Total: -4.30 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.00 Total: -50.82 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.17 Total: -12.10 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -4.20 Total: 3.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.45 -8.04 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412484689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.855 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds