Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31603 * 122.22606 * 2 1 4 4 C 1.29986 * 117.12263 * 180.26836 * 3 2 1 5 5 N 1.38751 * 125.36291 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99972 * 180.02562 * 5 4 3 7 7 O 1.21754 * 119.99530 * 354.81812 * 6 5 4 8 8 C 1.46319 * 120.00326 * 174.82679 * 6 5 4 9 9 C 1.36761 * 126.82356 * 4.99155 * 8 6 5 10 10 N 1.33226 * 107.95875 * 179.97438 * 9 8 6 11 11 C 1.31536 * 109.76195 * 359.97438 * 10 9 8 12 12 O 1.35210 * 125.49071 * 180.02562 * 11 10 9 13 13 N 1.34963 * 109.02303 * 359.76432 * 11 10 9 14 14 C 1.46496 * 126.54925 * 180.25020 * 13 11 10 15 15 S 1.76143 * 109.26893 * 359.97438 * 4 3 2 16 16 C 1.34646 * 122.22928 * 180.28141 * 2 1 3 17 17 S 1.76203 * 125.92756 * 359.73601 * 16 2 1 18 18 C 1.76196 * 100.00115 * 179.97438 * 17 16 2 19 19 H 1.08000 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.38421 * 119.99701 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99655 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46802 * 90.00088 * 22 20 18 24 24 H 1.48492 * 109.46826 * 209.99926 * 22 20 18 25 25 H 1.48500 * 109.47103 * 330.00120 * 22 20 18 26 26 H 1.08997 * 109.47576 * 269.71777 * 1 2 3 27 27 H 1.09005 * 109.46470 * 29.71683 * 1 2 3 28 28 H 1.08996 * 109.47112 * 149.71104 * 1 2 3 29 29 H 0.96995 * 120.00197 * 0.02562 * 5 4 3 30 30 H 1.08001 * 126.02205 * 359.93164 * 9 8 6 31 31 H 0.96698 * 114.00679 * 90.02245 * 12 11 10 32 32 H 1.08995 * 109.47282 * 274.96907 * 14 13 11 33 33 H 1.09004 * 109.46878 * 34.96814 * 14 13 11 34 34 H 1.08996 * 109.47251 * 154.96470 * 14 13 11 35 35 H 0.97001 * 120.00463 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1133 0.0000 4 6 3.5035 0.9977 -0.0054 5 7 4.4040 2.0533 -0.0058 6 6 5.7294 1.8084 -0.0123 7 8 6.1375 0.6649 0.0775 8 6 6.6776 2.9169 -0.1270 9 6 6.3805 4.2517 -0.1397 10 7 7.5235 4.9258 -0.2583 11 6 8.5321 4.0837 -0.3209 12 8 9.8343 4.4263 -0.4430 13 7 8.0581 2.8228 -0.2378 14 6 8.8492 1.5900 -0.2632 15 16 3.9346 -0.7102 -0.0106 16 6 2.2251 -1.1390 -0.0056 17 16 1.5696 -2.7745 -0.0071 18 6 3.0663 -3.7041 -0.0159 19 1 4.0185 -3.1945 -0.0191 20 6 3.0217 -5.0876 -0.0188 21 7 1.8596 -5.7096 -0.0144 22 14 4.6086 -6.0732 -0.0275 23 1 5.0348 -6.3375 1.3702 24 1 4.3865 -7.3627 -0.7295 25 1 5.6659 -5.3028 -0.7302 26 1 -0.3634 -0.0051 1.0276 27 1 -0.3632 0.8926 -0.5095 28 1 -0.3633 -0.8873 -0.5183 29 1 4.0798 2.9674 -0.0015 30 1 5.3932 4.6834 -0.0672 31 1 10.2892 4.5511 0.4011 32 1 9.0332 1.2977 -1.2969 33 1 9.8005 1.7583 0.2417 34 1 8.3025 0.7970 0.2469 35 1 1.8283 -6.6791 -0.0168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412484689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = 8.915923 kcal Electronic energy + Delta-G solvation = -23597.798417 eV Core-core repulsion = 19849.688896 eV Total energy + Delta-G solvation = -3748.109520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.045 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.47377 -41.23517 -40.07014 -38.40838 -36.41338 -35.12476 -34.80938 -32.35172 -30.55335 -28.76674 -28.17196 -27.70837 -25.87457 -23.87542 -22.70333 -22.34833 -21.12722 -19.93811 -19.71357 -19.10376 -18.35444 -17.68689 -17.48598 -17.06686 -17.04971 -16.51122 -16.33961 -15.69824 -15.60145 -15.16595 -14.94790 -14.86159 -14.37314 -13.84606 -13.78311 -13.52575 -13.40242 -13.29383 -13.23439 -13.06402 -12.87310 -12.39151 -12.15873 -12.03446 -11.58799 -11.35487 -11.23987 -10.99035 -10.81266 -10.49766 -10.47188 -9.80287 -9.46931 -8.56962 -8.36321 -6.29182 -0.41538 0.08814 0.19527 0.77894 0.91824 1.27184 1.31682 1.35353 1.42146 1.55963 1.75894 1.80268 2.14790 2.15488 2.72505 2.82550 3.10335 3.25740 3.70055 3.73552 3.80397 4.20057 4.23975 4.45060 4.55592 4.68309 4.85566 4.88253 4.98317 5.03737 5.20219 5.30179 5.45218 5.47664 5.84180 6.02677 6.45822 6.58679 6.65828 6.84625 6.87822 8.50720 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.003230 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.931976 B = 8665.681477 C =10574.267483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.039 3.961 3 N -0.477 5.477 4 C 0.228 3.772 5 N -0.588 5.588 6 C 0.596 3.404 7 O -0.538 6.538 8 C -0.099 4.099 9 C 0.083 3.917 10 N -0.512 5.512 11 C 0.415 3.585 12 O -0.439 6.439 13 N -0.429 5.429 14 C 0.059 3.941 15 S 0.165 5.835 16 C -0.279 4.279 17 S 0.101 5.899 18 C -0.575 4.575 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.896 5.896 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.266 1.266 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.438 0.562 30 H 0.221 0.779 31 H 0.431 0.569 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 18.187 1.303 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 N -0.199 5.199 4 C -0.145 4.145 5 N -0.239 5.239 6 C 0.385 3.615 7 O -0.416 6.416 8 C -0.214 4.214 9 C -0.073 4.073 10 N -0.241 5.241 11 C 0.115 3.885 12 O -0.244 6.244 13 N -0.122 5.122 14 C -0.082 4.082 15 S 0.409 5.591 16 C -0.515 4.515 17 S 0.349 5.651 18 C -0.724 4.724 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.531 5.531 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.190 1.190 25 H -0.190 1.190 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.280 0.720 30 H 0.238 0.762 31 H 0.293 0.707 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.091 17.301 0.724 21.120 hybrid contribution 1.162 -0.830 0.451 1.497 sum 13.253 16.472 1.174 21.174 Atomic orbital electron populations 1.20258 0.85653 1.03192 1.03146 1.19682 0.98398 0.84063 1.08159 1.66016 1.02511 1.31387 1.19942 1.23869 0.90069 0.92537 1.07982 1.41782 1.03015 1.08441 1.70686 1.16896 0.80984 0.87581 0.76079 1.90816 1.77259 1.23357 1.50178 1.19718 0.83489 0.95315 1.22927 1.23201 0.98807 0.87202 0.98081 1.70413 0.98361 1.32143 1.23219 1.20375 0.87396 0.79416 1.01264 1.84800 1.14272 1.88230 1.37122 1.45769 1.05942 1.08998 1.51462 1.22494 0.96810 0.83710 1.05206 1.85953 1.02181 0.97722 1.73205 1.28590 1.01657 1.06028 1.15212 1.82938 1.11188 0.86212 1.84765 1.23452 0.93910 0.94809 1.60184 0.90006 1.25883 1.01349 0.97471 0.92507 1.70091 1.26163 1.10740 1.46082 0.85133 0.77307 0.77602 0.79314 1.18828 1.19016 1.19004 0.90271 0.89402 0.91388 0.71970 0.76219 0.70668 0.89540 0.86166 0.88862 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 10.02 71.24 0.71 -1.34 16 2 C 0.04 1.54 6.73 41.77 0.28 1.82 16 3 N -0.48 -17.48 10.55 -184.95 -1.95 -19.43 16 4 C 0.23 8.05 8.39 179.19 1.50 9.55 16 5 N -0.59 -15.09 5.38 -313.49 -1.69 -16.77 16 6 C 0.60 15.81 7.73 86.34 0.67 16.48 16 7 O -0.54 -17.98 12.31 -4.52 -0.06 -18.04 16 8 C -0.10 -2.07 6.92 39.79 0.28 -1.80 16 9 C 0.08 1.41 11.36 84.14 0.96 2.36 16 10 N -0.51 -10.19 11.22 -313.60 -3.52 -13.71 16 11 C 0.42 7.32 9.01 179.98 1.62 8.95 16 12 O -0.44 -5.12 13.53 -84.91 -1.15 -6.27 16 13 N -0.43 -8.08 3.20 -652.01 -2.09 -10.17 16 14 C 0.06 0.90 10.81 127.77 1.38 2.28 16 15 S 0.16 7.05 18.35 -56.49 -1.04 6.01 16 16 C -0.28 -12.73 6.67 67.00 0.45 -12.28 16 17 S 0.10 5.18 20.74 -56.49 -1.17 4.01 16 18 C -0.58 -31.85 9.26 67.86 0.63 -31.22 16 19 H 0.08 4.49 5.97 -2.91 -0.02 4.48 16 20 C 0.04 1.89 5.49 84.74 0.47 2.36 16 21 N -0.90 -50.15 13.22 21.59 0.29 -49.86 16 22 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 27 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.07 2.29 7.38 -2.39 -0.02 2.27 16 29 H 0.44 7.60 7.75 -92.71 -0.72 6.88 16 30 H 0.22 1.96 7.45 -2.91 -0.02 1.94 16 31 H 0.43 0.18 9.06 -74.06 -0.67 -0.49 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 1.88 6.18 -2.39 -0.01 1.87 16 35 H 0.28 14.52 8.32 -92.71 -0.77 13.75 16 Total: -1.00 -74.29 336.44 -1.60 -75.89 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -0.19 Total: 6.93 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 8.94 Total: -2.84 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -8.96 Total: -109.95 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.20 Total: -24.30 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 12.23 SS G_CDS: -2.21 Total: 10.02 kcal Total: -74.29 -1.60 -75.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412484689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.806 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds