Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86803 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47117 * 299.99906 * 3 2 1 6 6 H 1.48501 * 109.46995 * 59.99945 * 3 2 1 7 7 C 1.38663 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99820 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99862 * 185.05876 * 9 7 2 11 11 C 1.38902 * 120.06913 * 354.49240 * 10 9 7 12 12 C 1.38081 * 119.93294 * 179.97438 * 11 10 9 13 13 C 1.38330 * 120.06494 * 359.74646 * 12 11 10 14 14 C 1.38279 * 120.13685 * 0.50873 * 13 12 11 15 15 C 1.50707 * 119.96246 * 179.76757 * 14 13 12 16 16 N 1.46499 * 109.46958 * 269.72368 * 15 14 13 17 17 S 1.65601 * 120.00013 * 165.00206 * 16 15 14 18 18 O 1.42093 * 106.40279 * 178.53944 * 17 16 15 19 19 O 1.42104 * 106.39938 * 311.45807 * 17 16 15 20 20 C 1.76195 * 107.21684 * 64.99743 * 17 16 15 21 21 C 1.33644 * 122.75207 * 90.00410 * 20 17 16 22 22 S 1.76195 * 107.92734 * 179.97438 * 21 20 17 23 23 C 1.70976 * 90.28132 * 359.97438 * 22 21 20 24 24 N 1.29029 * 110.16953 * 359.73521 * 23 22 21 25 25 C 1.38121 * 120.07124 * 359.48700 * 14 13 12 26 26 H 0.96996 * 120.00083 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.03558 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96673 * 180.02562 * 12 11 10 29 29 H 1.07994 * 119.92894 * 180.27809 * 13 12 11 30 30 H 1.09000 * 109.47155 * 29.72499 * 15 14 13 31 31 H 1.08997 * 109.47118 * 149.72617 * 15 14 13 32 32 H 0.97003 * 120.00028 * 344.99929 * 16 15 14 33 33 H 1.08001 * 126.03418 * 359.97438 * 21 20 17 34 34 H 1.08007 * 124.91631 * 179.97438 * 23 22 21 35 35 H 1.07995 * 120.03380 * 180.23042 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0927 12 6 4.2025 -4.5968 0.2014 13 6 3.5687 -5.8198 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5011 -7.2235 0.4692 16 7 1.2717 -7.7896 -0.8624 17 16 0.8799 -9.3903 -1.0254 18 8 0.6910 -9.6176 -2.4152 19 8 1.8164 -10.1146 -0.2395 20 6 -0.6926 -9.6223 -0.2650 21 6 -1.8439 -9.4940 -0.9314 22 16 -3.1610 -9.8087 0.1959 23 6 -2.0326 -10.0821 1.4510 24 7 -0.8296 -9.9434 1.0057 25 6 1.4366 -4.7343 0.2278 26 1 -0.4850 0.8400 -0.0004 27 1 3.9528 -2.4844 -0.0014 28 1 5.2813 -4.5468 0.1918 29 1 4.1536 -6.7232 0.4176 30 1 2.1304 -7.8996 1.0480 31 1 0.5459 -7.0918 0.9774 32 1 1.3494 -7.2267 -1.6486 33 1 -1.9485 -9.2421 -1.9764 34 1 -2.2895 -10.3381 2.4684 35 1 0.3581 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413288306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -23.836543 kcal Electronic energy + Delta-G solvation = -23689.552848 eV Core-core repulsion = 19907.730324 eV Total energy + Delta-G solvation = -3781.822525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.97538 -39.19657 -37.40720 -37.00726 -35.99343 -34.83459 -32.34429 -31.09732 -30.49344 -29.07333 -26.16860 -25.78448 -24.95720 -21.97210 -21.71888 -20.91094 -19.57794 -19.11209 -18.06823 -17.48401 -17.16555 -16.86657 -15.99319 -15.67675 -15.20368 -14.94885 -14.73959 -14.63849 -14.37164 -13.88004 -13.80704 -13.64892 -12.98083 -12.95230 -12.78287 -12.45215 -12.24826 -12.14067 -12.07201 -11.71896 -11.39074 -11.34233 -10.91242 -10.78908 -10.71849 -10.46769 -10.20237 -10.06566 -9.84219 -9.62613 -9.40243 -8.90963 -8.25660 -7.33322 -6.51020 -4.10256 -0.04865 0.15159 0.89076 1.19989 1.85277 1.99574 2.27666 2.99516 3.09279 3.10412 3.15728 3.55061 3.79064 3.91301 4.36913 4.48168 4.67372 4.78777 4.87114 5.03784 5.15225 5.33235 5.38145 5.61421 5.68333 5.85296 5.92659 6.08728 6.24198 6.55091 6.80238 6.88306 6.99813 7.02007 7.17875 7.28095 7.34712 7.70745 7.93555 8.94898 9.63476 10.66941 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002680 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.617838 B =10447.055597 C =11589.928725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.192 4.192 14 C -0.064 4.064 15 C 0.167 3.833 16 N -1.102 6.102 17 S 2.720 3.280 18 O -0.954 6.954 19 O -0.934 6.934 20 C -0.499 4.499 21 C -0.145 4.145 22 S 0.167 5.833 23 C 0.012 3.988 24 N -0.399 5.399 25 C -0.174 4.174 26 H 0.270 0.730 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.424 0.576 33 H 0.198 0.802 34 H 0.210 0.790 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 -17.674 0.480 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.212 4.212 14 C -0.066 4.066 15 C 0.043 3.957 16 N -0.864 5.864 17 S 2.802 3.198 18 O -0.943 6.943 19 O -0.924 6.924 20 C -0.713 4.713 21 C -0.288 4.288 22 S 0.420 5.580 23 C -0.289 4.289 24 N -0.112 5.112 25 C -0.194 4.194 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.260 0.740 33 H 0.215 0.785 34 H 0.226 0.774 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.210 -18.353 0.594 19.087 hybrid contribution 0.505 1.508 -0.266 1.612 sum -4.705 -16.845 0.329 17.493 Atomic orbital electron populations 1.70037 1.05975 1.27624 1.46050 1.25290 0.95846 0.98851 0.96481 0.85644 0.79160 0.80324 0.78283 1.19073 1.20130 1.20115 1.21377 0.91840 0.80750 1.52903 0.88975 1.83974 1.34289 1.11415 1.78450 1.19312 0.90275 0.88050 0.92722 1.21256 0.93847 0.99123 1.10204 1.20768 0.98652 0.92235 0.97765 1.20539 0.93393 0.97304 1.09952 1.19143 0.93511 0.92395 1.01590 1.20159 1.00048 0.93450 0.82089 1.55515 1.85446 1.30090 1.15393 1.01597 0.72684 0.72717 0.72816 1.93620 1.86376 1.84443 1.29884 1.93595 1.57491 1.69910 1.71388 1.32984 1.22521 1.16701 0.99081 1.27363 0.94371 1.01189 1.05865 1.84142 1.11898 1.60231 1.01691 1.28836 0.90521 1.04381 1.05211 1.66344 1.23164 1.11202 1.10452 1.20052 0.99317 0.89866 1.10186 0.92037 0.85456 0.87191 0.87136 0.89283 0.91319 0.74018 0.78522 0.77394 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -4.89 9.76 0.06 0.00 -4.89 16 10 C 0.15 3.45 6.65 -39.11 -0.26 3.19 16 11 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.16 9.70 -39.53 -0.38 -3.55 16 14 C -0.06 -1.07 5.27 -104.65 -0.55 -1.62 16 15 C 0.17 2.25 6.35 -5.19 -0.03 2.22 16 16 N -1.10 -13.36 5.99 -11.65 -0.07 -13.43 16 17 S 2.72 34.05 5.85 -107.50 -0.63 33.42 16 18 O -0.95 -13.17 17.69 -57.17 -1.01 -14.18 16 19 O -0.93 -14.45 17.43 -57.17 -1.00 -15.45 16 20 C -0.50 -5.71 6.78 -19.18 -0.13 -5.84 16 21 C -0.14 -1.33 10.84 29.12 0.32 -1.01 16 22 S 0.17 1.18 23.22 -107.50 -2.50 -1.32 16 23 C 0.01 0.10 12.23 51.59 0.63 0.73 16 24 N -0.40 -4.69 10.47 -14.93 -0.16 -4.85 16 25 C -0.17 -3.41 9.65 -39.40 -0.38 -3.79 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.09 1.14 7.69 -51.93 -0.40 0.75 16 31 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.42 4.78 8.64 -34.47 -0.30 4.48 16 33 H 0.20 1.36 8.05 -52.49 -0.42 0.94 16 34 H 0.21 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -34.80 340.45 -8.78 -43.58 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -2.93 Total: 6.67 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.35 Total: -25.82 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.53 Total: -42.18 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -2.01 Total: -34.52 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 35.23 SS G_CDS: -3.13 Total: 32.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.80 -8.78 -43.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413288306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.742 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds