Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86803 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47117 * 299.99906 * 3 2 1 6 6 H 1.48501 * 109.46995 * 59.99945 * 3 2 1 7 7 C 1.38663 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99820 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99862 * 185.05876 * 9 7 2 11 11 C 1.38902 * 120.06913 * 354.49240 * 10 9 7 12 12 C 1.38081 * 119.93294 * 179.97438 * 11 10 9 13 13 C 1.38330 * 120.06494 * 359.74646 * 12 11 10 14 14 C 1.38279 * 120.13685 * 0.50873 * 13 12 11 15 15 C 1.50707 * 119.96246 * 179.76757 * 14 13 12 16 16 N 1.46499 * 109.46958 * 269.72368 * 15 14 13 17 17 S 1.65601 * 120.00013 * 165.00206 * 16 15 14 18 18 O 1.42093 * 106.40279 * 178.53944 * 17 16 15 19 19 O 1.42104 * 106.39938 * 311.45807 * 17 16 15 20 20 C 1.76195 * 107.21684 * 64.99743 * 17 16 15 21 21 C 1.33644 * 122.75207 * 90.00410 * 20 17 16 22 22 S 1.76195 * 107.92734 * 179.97438 * 21 20 17 23 23 C 1.70976 * 90.28132 * 359.97438 * 22 21 20 24 24 N 1.29029 * 110.16953 * 359.73521 * 23 22 21 25 25 C 1.38121 * 120.07124 * 359.48700 * 14 13 12 26 26 H 0.96996 * 120.00083 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.03558 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96673 * 180.02562 * 12 11 10 29 29 H 1.07994 * 119.92894 * 180.27809 * 13 12 11 30 30 H 1.09000 * 109.47155 * 29.72499 * 15 14 13 31 31 H 1.08997 * 109.47118 * 149.72617 * 15 14 13 32 32 H 0.97003 * 120.00028 * 344.99929 * 16 15 14 33 33 H 1.08001 * 126.03418 * 359.97438 * 21 20 17 34 34 H 1.08007 * 124.91631 * 179.97438 * 23 22 21 35 35 H 1.07995 * 120.03380 * 180.23042 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0927 12 6 4.2025 -4.5968 0.2014 13 6 3.5687 -5.8198 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5011 -7.2235 0.4692 16 7 1.2717 -7.7896 -0.8624 17 16 0.8799 -9.3903 -1.0254 18 8 0.6910 -9.6176 -2.4152 19 8 1.8164 -10.1146 -0.2395 20 6 -0.6926 -9.6223 -0.2650 21 6 -1.8439 -9.4940 -0.9314 22 16 -3.1610 -9.8087 0.1959 23 6 -2.0326 -10.0821 1.4510 24 7 -0.8296 -9.9434 1.0057 25 6 1.4366 -4.7343 0.2278 26 1 -0.4850 0.8400 -0.0004 27 1 3.9528 -2.4844 -0.0014 28 1 5.2813 -4.5468 0.1918 29 1 4.1536 -6.7232 0.4176 30 1 2.1304 -7.8996 1.0480 31 1 0.5459 -7.0918 0.9774 32 1 1.3494 -7.2267 -1.6486 33 1 -1.9485 -9.2421 -1.9764 34 1 -2.2895 -10.3381 2.4684 35 1 0.3581 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413288306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -51.183714 kcal Electronic energy + Delta-G solvation = -23690.738711 eV Core-core repulsion = 19907.730324 eV Total energy + Delta-G solvation = -3783.008387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83008 -40.69189 -38.69541 -38.37533 -37.06772 -36.07608 -34.27131 -31.91453 -31.79724 -30.65921 -27.50056 -26.86365 -26.45187 -23.25129 -22.76188 -22.47220 -20.40793 -19.97697 -19.63463 -18.96685 -18.43893 -17.81756 -17.07790 -16.77709 -16.43831 -16.36900 -16.07624 -15.70234 -15.67645 -15.45567 -15.22193 -14.43869 -14.40397 -14.19048 -13.93996 -13.69433 -13.49502 -13.40764 -13.32290 -13.23134 -12.96477 -12.49096 -12.28375 -12.27118 -12.20475 -12.07278 -11.20801 -10.89776 -10.81153 -10.78532 -10.61777 -10.44507 -9.74711 -9.01450 -8.46596 -6.14469 -0.90506 -0.61453 0.25284 0.44919 0.56674 0.72828 1.15393 1.36546 1.43938 1.54046 2.02732 2.17837 2.59428 2.83839 3.01989 3.16512 3.40692 3.66836 3.78266 3.99144 4.10382 4.12772 4.30709 4.37420 4.44863 4.56292 4.70362 4.74278 4.84302 5.03371 5.13617 5.28840 5.63333 5.72269 5.74612 5.93235 6.03054 6.18991 6.32396 6.98804 7.78801 8.76581 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002680 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.617838 B =10447.055597 C =11589.928725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.112 3.888 11 C -0.236 4.236 12 C -0.072 4.072 13 C -0.174 4.174 14 C -0.053 4.053 15 C 0.170 3.830 16 N -1.100 6.100 17 S 2.742 3.258 18 O -0.970 6.970 19 O -0.966 6.966 20 C -0.519 4.519 21 C -0.158 4.158 22 S 0.231 5.769 23 C 0.005 3.995 24 N -0.438 5.438 25 C -0.180 4.180 26 H 0.272 0.728 27 H 0.119 0.881 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.214 0.786 34 H 0.240 0.760 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -19.298 0.929 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.138 6.138 10 C 0.062 3.938 11 C -0.256 4.256 12 C -0.090 4.090 13 C -0.193 4.193 14 C -0.055 4.055 15 C 0.045 3.955 16 N -0.862 5.862 17 S 2.827 3.173 18 O -0.960 6.960 19 O -0.956 6.956 20 C -0.736 4.736 21 C -0.302 4.302 22 S 0.485 5.515 23 C -0.295 4.295 24 N -0.151 5.151 25 C -0.200 4.200 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.264 0.736 33 H 0.231 0.769 34 H 0.256 0.744 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.464 -20.025 1.028 20.542 hybrid contribution 0.247 1.634 -0.360 1.691 sum -4.217 -18.391 0.668 18.880 Atomic orbital electron populations 1.70174 1.07946 1.28672 1.48968 1.26530 0.96819 1.02608 0.95938 0.84555 0.78300 0.75051 0.78491 1.17504 1.19454 1.19449 1.21844 0.92510 0.81420 1.53051 0.88088 1.83937 1.35833 1.12501 1.81498 1.19866 0.91543 0.87965 0.94461 1.21370 0.93207 1.00251 1.10726 1.21153 1.00382 0.91236 0.96189 1.21067 0.93522 0.98248 1.06462 1.19430 0.93825 0.92736 0.99492 1.20155 1.00637 0.91790 0.82886 1.55348 1.85870 1.29959 1.15036 1.00619 0.72578 0.72069 0.72019 1.93592 1.86822 1.84607 1.30984 1.93547 1.59463 1.70675 1.71948 1.32522 1.22200 1.19100 0.99747 1.27733 0.94952 1.00261 1.07220 1.83965 1.09656 1.58244 0.99607 1.29420 0.90158 1.02981 1.06988 1.66334 1.25063 1.13002 1.10729 1.20246 0.99701 0.89865 1.10191 0.91890 0.86301 0.83609 0.83614 0.87992 0.90321 0.73580 0.76942 0.74371 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 13.67 21.61 0.30 -54.92 16 2 C -0.02 -1.19 5.49 84.84 0.47 -0.72 16 3 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.41 -23.39 9.49 67.92 0.64 -22.75 16 8 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 9 O -0.23 -13.44 9.76 -22.69 -0.22 -13.66 16 10 C 0.11 5.31 6.65 22.58 0.15 5.46 16 11 C -0.24 -9.80 9.17 22.39 0.21 -9.60 16 12 C -0.07 -2.32 10.04 22.25 0.22 -2.10 16 13 C -0.17 -5.14 9.70 22.30 0.22 -4.93 16 14 C -0.05 -1.65 5.27 -19.88 -0.10 -1.76 16 15 C 0.17 4.23 6.35 85.64 0.54 4.77 16 16 N -1.10 -25.03 5.99 -190.78 -1.14 -26.17 16 17 S 2.74 65.87 5.85 -56.49 -0.33 65.54 16 18 O -0.97 -26.01 17.69 -128.00 -2.26 -28.27 16 19 O -0.97 -28.96 17.43 -128.00 -2.23 -31.19 16 20 C -0.52 -11.19 6.78 83.66 0.57 -10.62 16 21 C -0.16 -2.61 10.84 66.78 0.72 -1.89 16 22 S 0.23 2.64 23.22 -56.49 -1.31 1.33 16 23 C 0.01 0.08 12.23 130.65 1.60 1.67 16 24 N -0.44 -9.58 10.47 -201.16 -2.11 -11.69 16 25 C -0.18 -7.12 9.65 22.39 0.22 -6.90 16 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 28 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.10 2.33 7.69 -2.39 -0.02 2.31 16 31 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.43 9.13 8.64 -96.74 -0.84 8.29 16 33 H 0.21 2.58 8.05 -2.91 -0.02 2.56 16 34 H 0.24 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -79.32 340.45 -1.51 -80.83 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.33 Total: 23.54 kcal Atomic # 6 Polarization: -54.81 SS G_CDS: 5.45 Total: -49.36 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -2.95 Total: -92.78 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -4.72 Total: -73.13 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 68.51 SS G_CDS: -1.64 Total: 66.87 kcal Total: -79.32 -1.51 -80.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413288306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.645 kcal (2) G-P(sol) polarization free energy of solvation -79.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds