Wall clock time and date at job start Sat Apr 11 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48495 * 109.47162 * 84.74251 * 3 2 1 5 5 H 1.48499 * 109.46924 * 204.73883 * 3 2 1 6 6 H 1.48493 * 109.47272 * 324.73924 * 3 2 1 7 7 C 1.40033 * 119.99795 * 179.72723 * 2 1 3 8 8 H 1.08002 * 119.99911 * 20.20421 * 7 2 1 9 9 C 1.41313 * 119.99830 * 200.21189 * 7 2 1 10 10 C 1.40587 * 119.78598 * 25.87462 * 9 7 2 11 11 C 1.38349 * 119.14382 * 179.79286 * 10 9 7 12 12 C 1.38637 * 118.68389 * 0.48157 * 11 10 9 13 13 C 1.39756 * 119.49053 * 359.74378 * 12 11 10 14 14 N 1.38828 * 119.58367 * 180.02562 * 13 12 11 15 15 S 1.65600 * 119.99953 * 181.91863 * 14 13 12 16 16 O 1.42091 * 106.40317 * 179.59242 * 15 14 13 17 17 O 1.42098 * 106.40212 * 312.51516 * 15 14 13 18 18 C 1.76203 * 107.21675 * 66.05393 * 15 14 13 19 19 C 1.38416 * 120.02510 * 262.66216 * 18 15 14 20 20 F 1.35098 * 120.01480 * 0.02562 * 19 18 15 21 21 C 1.38476 * 119.97585 * 179.78989 * 19 18 15 22 22 C 1.38216 * 120.02410 * 0.48660 * 21 19 18 23 23 C 1.38206 * 120.04859 * 359.74161 * 22 21 19 24 24 C 1.38416 * 120.02423 * 82.93456 * 18 15 14 25 25 F 1.35099 * 120.01571 * 0.02562 * 24 18 15 26 26 N 1.31981 * 120.82951 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99537 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.42898 * 0.02562 * 10 9 7 29 29 H 1.08005 * 120.65994 * 180.19931 * 11 10 9 30 30 H 1.07998 * 120.25413 * 179.76470 * 12 11 10 31 31 H 0.96999 * 119.99925 * 1.91779 * 14 13 12 32 32 H 1.08002 * 119.99401 * 180.22876 * 21 19 18 33 33 H 1.07994 * 119.97743 * 179.77119 * 22 21 19 34 34 H 1.07998 * 119.99216 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3779 2.1105 1.3941 5 1 3.5902 1.4105 -0.5859 6 1 1.4991 2.6180 -0.8082 7 6 2.0076 -1.2127 0.0058 8 1 1.5174 -2.1208 -0.3129 9 6 3.3555 -1.2484 0.4288 10 6 3.8330 -0.2738 1.3224 11 6 5.1538 -0.3239 1.7312 12 6 5.9661 -1.3319 1.2351 13 6 5.4340 -2.2690 0.3453 14 7 6.2456 -3.2796 -0.1522 15 16 5.6388 -4.3671 -1.2437 16 8 6.7029 -5.2536 -1.5608 17 8 4.3914 -4.8050 -0.7226 18 6 5.2761 -3.4768 -2.7204 19 6 3.9853 -3.0427 -2.9681 20 9 3.0029 -3.3009 -2.0775 21 6 3.7023 -2.3393 -4.1269 22 6 4.7062 -2.0794 -5.0408 23 6 5.9944 -2.5165 -4.7967 24 6 6.2806 -3.2159 -3.6362 25 9 7.5397 -3.6442 -3.3986 26 7 4.1697 -2.2054 -0.0280 27 1 -0.4849 0.8401 0.0004 28 1 3.1763 0.5017 1.6881 29 1 5.5455 0.4105 2.4195 30 1 7.0021 -1.3927 1.5343 31 1 7.1681 -3.3486 0.1395 32 1 2.6960 -1.9973 -4.3187 33 1 4.4839 -1.5340 -5.9460 34 1 6.7781 -2.3126 -5.5112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414349038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:49 Heat of formation + Delta-G solvation = -86.964969 kcal Electronic energy + Delta-G solvation = -28221.893572 eV Core-core repulsion = 23883.493207 eV Total energy + Delta-G solvation = -4338.400365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20390 -48.47347 -38.96104 -38.63005 -36.81364 -35.49442 -35.08916 -33.42774 -31.33210 -31.17726 -30.29291 -29.45486 -25.72982 -23.69108 -22.88837 -22.28497 -21.64080 -19.30426 -18.48663 -18.20471 -17.52620 -17.21445 -16.90047 -16.22469 -15.90604 -15.70335 -15.41847 -15.04501 -14.98452 -14.68451 -14.55552 -14.33023 -14.25125 -13.37001 -13.04914 -12.72456 -12.62155 -12.44901 -12.09437 -12.01334 -11.97004 -11.82359 -11.65553 -11.62621 -11.46907 -11.15863 -10.66364 -10.51026 -10.37421 -10.03431 -9.54713 -9.37227 -8.67890 -8.65147 -8.20028 -7.48743 -7.14594 -4.76287 0.43094 0.74845 1.02779 2.35311 2.47556 2.96887 3.02031 3.09044 3.16480 3.30874 3.80554 3.82925 3.92648 4.27826 4.33346 4.45017 4.66519 5.03445 5.09554 5.12679 5.38903 5.47844 5.65740 5.78685 5.80042 6.00456 6.05691 6.11747 6.31310 6.38421 6.59742 6.72419 6.95610 7.11213 7.29991 7.38221 7.71233 8.21739 8.35665 8.55133 9.38263 9.85724 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.005935 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.643007 B = 4716.760477 C = 5493.863687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.247 1.247 6 H -0.289 1.289 7 C -0.405 4.405 8 H 0.107 0.893 9 C 0.289 3.711 10 C -0.306 4.306 11 C -0.020 4.020 12 C -0.324 4.324 13 C 0.395 3.605 14 N -1.031 6.031 15 S 2.698 3.302 16 O -0.959 6.959 17 O -0.907 6.907 18 C -0.761 4.761 19 C 0.270 3.730 20 F -0.064 7.064 21 C -0.197 4.197 22 C -0.010 4.010 23 C -0.203 4.203 24 C 0.219 3.781 25 F -0.115 7.115 26 N -0.577 5.577 27 H 0.290 0.710 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.426 0.574 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 0.248 -8.031 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.170 1.170 6 H -0.217 1.217 7 C -0.437 4.437 8 H 0.125 0.875 9 C 0.164 3.836 10 C -0.329 4.329 11 C -0.044 4.044 12 C -0.351 4.351 13 C 0.158 3.842 14 N -0.781 5.781 15 S 2.785 3.215 16 O -0.950 6.950 17 O -0.897 6.897 18 C -0.847 4.847 19 C 0.248 3.752 20 F -0.041 7.041 21 C -0.216 4.216 22 C -0.028 4.028 23 C -0.222 4.222 24 C 0.198 3.802 25 F -0.093 7.093 26 N -0.299 5.299 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.262 0.738 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.060 -1.213 -8.536 11.803 hybrid contribution 1.138 1.984 0.558 2.354 sum 9.198 0.771 -7.978 12.201 Atomic orbital electron populations 1.69639 1.08100 1.30754 1.32189 1.26170 0.94783 1.01701 0.90850 0.86309 0.81111 0.79563 0.78929 1.19354 1.17032 1.21662 1.19323 0.91955 0.96792 1.35593 0.87482 1.18070 0.91846 0.85479 0.88173 1.21780 0.96873 1.06232 1.08002 1.20767 0.93200 0.95129 0.95306 1.20635 1.00338 1.02739 1.11434 1.17886 0.88945 0.86280 0.91075 1.53234 1.22647 1.44970 1.57245 1.02092 0.73943 0.72528 0.72969 1.93609 1.56636 1.60204 1.84509 1.93677 1.42250 1.77529 1.76212 1.30849 1.00086 1.28524 1.25240 1.16820 0.83534 0.88726 0.86095 1.91881 1.58144 1.89485 1.64570 1.21436 1.02260 1.03353 0.94597 1.21086 0.91058 0.92985 0.97705 1.21134 0.98968 1.04194 0.97924 1.16766 0.78141 0.92111 0.93195 1.91623 1.36515 1.86944 1.94229 1.67588 1.00948 1.29764 1.31649 0.89908 0.87100 0.87384 0.87550 0.73828 0.83081 0.83590 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.44 13.92 55.55 0.77 -18.67 16 2 C 0.09 2.16 5.40 -17.34 -0.09 2.07 16 3 Si 0.91 19.39 24.45 -169.99 -4.16 15.23 16 4 H -0.27 -5.47 6.62 56.52 0.37 -5.10 16 5 H -0.25 -5.41 6.86 56.52 0.39 -5.02 16 6 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.41 -10.62 9.53 -37.74 -0.36 -10.98 16 8 H 0.11 3.03 7.74 -52.49 -0.41 2.63 16 9 C 0.29 7.27 6.04 -85.00 -0.51 6.76 16 10 C -0.31 -7.08 7.22 -38.66 -0.28 -7.36 16 11 C -0.02 -0.40 10.15 -39.39 -0.40 -0.80 16 12 C -0.32 -6.39 9.95 -38.87 -0.39 -6.78 16 13 C 0.40 8.43 7.35 -155.31 -1.14 7.29 16 14 N -1.03 -18.47 5.84 31.14 0.18 -18.29 16 15 S 2.70 51.55 5.25 -107.50 -0.56 50.98 16 16 O -0.96 -18.33 16.50 -57.18 -0.94 -19.27 16 17 O -0.91 -20.44 14.73 -57.18 -0.84 -21.29 16 18 C -0.76 -13.60 5.76 -39.45 -0.23 -13.83 16 19 C 0.27 4.96 6.71 -39.43 -0.26 4.70 16 20 F -0.06 -1.40 12.77 2.25 0.03 -1.37 16 21 C -0.20 -2.85 10.03 -39.50 -0.40 -3.24 16 22 C -0.01 -0.11 10.04 -39.60 -0.40 -0.51 16 23 C -0.20 -2.45 10.03 -39.50 -0.40 -2.84 16 24 C 0.22 3.37 7.20 -39.43 -0.28 3.08 16 25 F -0.12 -1.77 15.58 2.25 0.04 -1.74 16 26 N -0.58 -13.96 5.96 -10.33 -0.06 -14.02 16 27 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 28 H 0.11 2.50 4.28 -52.48 -0.22 2.28 16 29 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.43 5.96 8.82 -34.47 -0.30 5.65 16 32 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -31.19 310.41 -8.24 -39.43 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.23 Total: 6.76 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -5.14 Total: -22.44 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.89 Total: -50.97 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.79 Total: -40.56 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.06 Total: -3.11 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.16 Total: 15.23 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.56 Total: 50.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.19 -8.24 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414349038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.538 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds