Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48495 * 109.47162 * 84.74251 * 3 2 1 5 5 H 1.48499 * 109.46924 * 204.73883 * 3 2 1 6 6 H 1.48493 * 109.47272 * 324.73924 * 3 2 1 7 7 C 1.40033 * 119.99795 * 179.72723 * 2 1 3 8 8 H 1.08002 * 119.99911 * 20.20421 * 7 2 1 9 9 C 1.41313 * 119.99830 * 200.21189 * 7 2 1 10 10 C 1.40587 * 119.78598 * 25.87462 * 9 7 2 11 11 C 1.38349 * 119.14382 * 179.79286 * 10 9 7 12 12 C 1.38637 * 118.68389 * 0.48157 * 11 10 9 13 13 C 1.39756 * 119.49053 * 359.74378 * 12 11 10 14 14 N 1.38828 * 119.58367 * 180.02562 * 13 12 11 15 15 S 1.65600 * 119.99953 * 181.91863 * 14 13 12 16 16 O 1.42091 * 106.40317 * 179.59242 * 15 14 13 17 17 O 1.42098 * 106.40212 * 312.51516 * 15 14 13 18 18 C 1.76203 * 107.21675 * 66.05393 * 15 14 13 19 19 C 1.38416 * 120.02510 * 262.66216 * 18 15 14 20 20 F 1.35098 * 120.01480 * 0.02562 * 19 18 15 21 21 C 1.38476 * 119.97585 * 179.78989 * 19 18 15 22 22 C 1.38216 * 120.02410 * 0.48660 * 21 19 18 23 23 C 1.38206 * 120.04859 * 359.74161 * 22 21 19 24 24 C 1.38416 * 120.02423 * 82.93456 * 18 15 14 25 25 F 1.35099 * 120.01571 * 0.02562 * 24 18 15 26 26 N 1.31981 * 120.82951 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99537 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.42898 * 0.02562 * 10 9 7 29 29 H 1.08005 * 120.65994 * 180.19931 * 11 10 9 30 30 H 1.07998 * 120.25413 * 179.76470 * 12 11 10 31 31 H 0.96999 * 119.99925 * 1.91779 * 14 13 12 32 32 H 1.08002 * 119.99401 * 180.22876 * 21 19 18 33 33 H 1.07994 * 119.97743 * 179.77119 * 22 21 19 34 34 H 1.07998 * 119.99216 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3779 2.1105 1.3941 5 1 3.5902 1.4105 -0.5859 6 1 1.4991 2.6180 -0.8082 7 6 2.0076 -1.2127 0.0058 8 1 1.5174 -2.1208 -0.3129 9 6 3.3555 -1.2484 0.4288 10 6 3.8330 -0.2738 1.3224 11 6 5.1538 -0.3239 1.7312 12 6 5.9661 -1.3319 1.2351 13 6 5.4340 -2.2690 0.3453 14 7 6.2456 -3.2796 -0.1522 15 16 5.6388 -4.3671 -1.2437 16 8 6.7029 -5.2536 -1.5608 17 8 4.3914 -4.8050 -0.7226 18 6 5.2761 -3.4768 -2.7204 19 6 3.9853 -3.0427 -2.9681 20 9 3.0029 -3.3009 -2.0775 21 6 3.7023 -2.3393 -4.1269 22 6 4.7062 -2.0794 -5.0408 23 6 5.9944 -2.5165 -4.7967 24 6 6.2806 -3.2159 -3.6362 25 9 7.5397 -3.6442 -3.3986 26 7 4.1697 -2.2054 -0.0280 27 1 -0.4849 0.8401 0.0004 28 1 3.1763 0.5017 1.6881 29 1 5.5455 0.4105 2.4195 30 1 7.0021 -1.3927 1.5343 31 1 7.1681 -3.3486 0.1395 32 1 2.6960 -1.9973 -4.3187 33 1 4.4839 -1.5340 -5.9460 34 1 6.7781 -2.3126 -5.5112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414349038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -108.902932 kcal Electronic energy + Delta-G solvation = -28222.844873 eV Core-core repulsion = 23883.493207 eV Total energy + Delta-G solvation = -4339.351667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.37553 -49.90919 -40.67319 -39.75509 -38.38498 -37.10287 -36.74787 -35.18137 -32.96332 -32.42133 -31.41860 -31.19896 -27.49825 -24.85581 -24.12170 -23.90253 -23.36709 -20.78844 -20.14567 -19.57472 -18.91602 -18.49943 -18.33880 -17.85194 -17.42282 -17.15701 -16.68588 -16.52675 -16.28873 -16.21163 -16.06915 -15.92971 -15.47154 -15.05793 -14.73282 -14.27866 -13.89077 -13.75706 -13.65299 -13.47222 -13.31751 -13.24528 -13.17187 -13.12258 -13.05087 -12.86104 -12.34889 -12.15029 -11.87161 -11.71888 -11.09476 -10.70718 -10.37276 -9.91606 -9.84360 -9.19803 -8.95326 -6.65070 -0.93363 -0.54356 -0.11847 0.62414 0.79786 1.27244 1.42429 1.49535 1.61597 2.10504 2.11863 2.43411 2.55524 2.68304 3.01849 3.29238 3.49014 3.57623 3.68641 3.77414 4.07159 4.27654 4.41009 4.52988 4.59370 4.61135 4.69650 4.80966 4.91733 5.01430 5.01997 5.23782 5.52184 5.61185 5.67857 5.74984 6.00415 6.27377 6.52529 6.69861 7.63379 8.12068 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.005935 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.643007 B = 4716.760477 C = 5493.863687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.056 3.944 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.257 1.257 6 H -0.273 1.273 7 C -0.443 4.443 8 H 0.059 0.941 9 C 0.275 3.725 10 C -0.326 4.326 11 C -0.015 4.015 12 C -0.305 4.305 13 C 0.378 3.622 14 N -1.020 6.020 15 S 2.705 3.295 16 O -0.965 6.965 17 O -0.954 6.954 18 C -0.776 4.776 19 C 0.226 3.774 20 F -0.100 7.100 21 C -0.202 4.202 22 C 0.014 3.986 23 C -0.181 4.181 24 C 0.203 3.797 25 F -0.117 7.117 26 N -0.598 5.598 27 H 0.300 0.700 28 H 0.115 0.885 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.443 0.557 32 H 0.161 0.839 33 H 0.202 0.798 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.305 2.876 -9.335 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.163 4.163 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.200 1.200 7 C -0.475 4.475 8 H 0.077 0.923 9 C 0.149 3.851 10 C -0.348 4.348 11 C -0.039 4.039 12 C -0.332 4.332 13 C 0.141 3.859 14 N -0.772 5.772 15 S 2.795 3.205 16 O -0.955 6.955 17 O -0.944 6.944 18 C -0.866 4.866 19 C 0.204 3.796 20 F -0.078 7.078 21 C -0.221 4.221 22 C -0.004 4.004 23 C -0.200 4.200 24 C 0.181 3.819 25 F -0.095 7.095 26 N -0.320 5.320 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.283 0.717 32 H 0.179 0.821 33 H 0.219 0.781 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 11.419 1.371 -9.804 15.113 hybrid contribution 0.316 1.054 0.868 1.401 sum 11.735 2.425 -8.936 14.948 Atomic orbital electron populations 1.69660 1.09264 1.32137 1.33873 1.26829 0.95362 1.04045 0.90020 0.85431 0.79292 0.75943 0.79844 1.17578 1.18054 1.19968 1.19156 0.93268 0.96158 1.38912 0.92254 1.18192 0.91608 0.86615 0.88659 1.21897 0.98584 1.06134 1.08187 1.21282 0.91891 0.95755 0.95017 1.21203 1.02280 1.00824 1.08861 1.18269 0.88576 0.87363 0.91724 1.53002 1.23226 1.43824 1.57148 1.01471 0.72937 0.72688 0.73364 1.93588 1.56390 1.60857 1.84714 1.93628 1.44191 1.78920 1.77614 1.30506 1.00895 1.29957 1.25203 1.17341 0.83349 0.91446 0.87434 1.91796 1.59479 1.90340 1.66176 1.21784 1.04040 1.02440 0.93867 1.21736 0.89564 0.91010 0.98063 1.21725 1.00378 1.01189 0.96693 1.17065 0.77543 0.93150 0.94094 1.91614 1.36390 1.87144 1.94384 1.67552 1.02338 1.29890 1.32245 0.88851 0.86738 0.82849 0.83146 0.71715 0.82087 0.78088 0.79172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.92 13.92 21.84 0.30 -42.61 16 2 C 0.06 2.88 5.40 85.29 0.46 3.34 16 3 Si 0.97 39.76 24.45 68.60 1.68 41.44 16 4 H -0.25 -9.48 6.62 99.48 0.66 -8.82 16 5 H -0.26 -10.78 6.86 99.48 0.68 -10.09 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.44 -24.88 9.53 23.46 0.22 -24.66 16 8 H 0.06 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.27 14.28 6.04 40.19 0.24 14.52 16 10 C -0.33 -14.73 7.22 22.87 0.17 -14.57 16 11 C -0.02 -0.56 10.15 22.39 0.23 -0.33 16 12 C -0.31 -11.00 9.95 22.73 0.23 -10.78 16 13 C 0.38 15.85 7.35 133.40 0.98 16.84 16 14 N -1.02 -36.00 5.84 -55.38 -0.32 -36.32 16 15 S 2.71 106.52 5.25 -56.49 -0.30 106.22 16 16 O -0.97 -37.24 16.50 -128.00 -2.11 -39.35 16 17 O -0.95 -46.10 14.73 -128.00 -1.89 -47.98 16 18 C -0.78 -28.08 5.76 22.35 0.13 -27.95 16 19 C 0.23 8.63 6.71 22.37 0.15 8.78 16 20 F -0.10 -4.83 12.77 44.97 0.57 -4.26 16 21 C -0.20 -5.68 10.03 22.32 0.22 -5.45 16 22 C 0.01 0.26 10.04 22.26 0.22 0.48 16 23 C -0.18 -3.58 10.03 22.32 0.22 -3.35 16 24 C 0.20 5.85 7.20 22.37 0.16 6.01 16 25 F -0.12 -3.38 15.58 44.97 0.70 -2.68 16 26 N -0.60 -29.86 5.96 -186.59 -1.11 -30.97 16 27 H 0.30 13.75 8.29 -92.71 -0.77 12.98 16 28 H 0.12 5.02 4.28 -2.91 -0.01 5.00 16 29 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.44 11.65 8.82 -96.75 -0.85 10.79 16 32 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -75.09 310.41 1.44 -73.65 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.27 Total: 19.97 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.64 Total: -37.10 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -1.13 Total: -109.90 kcal Atomic # 8 Polarization: -83.34 SS G_CDS: -4.00 Total: -87.33 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.27 Total: -6.93 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.68 Total: 41.44 kcal Atomic # 16 Polarization: 106.52 SS G_CDS: -0.30 Total: 106.22 kcal Total: -75.09 1.44 -73.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414349038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.251 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds