Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48503 * 109.47006 * 271.24137 * 3 2 1 5 5 H 1.48496 * 109.46898 * 31.24307 * 3 2 1 6 6 H 1.48502 * 109.46883 * 151.24203 * 3 2 1 7 7 C 1.37882 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99922 * 358.92781 * 7 2 1 9 9 C 1.50699 * 120.00149 * 178.92223 * 7 2 1 10 10 C 1.53006 * 115.54466 * 86.90334 * 9 7 2 11 11 N 1.46502 * 109.47032 * 64.74293 * 10 9 7 12 12 C 1.34777 * 120.00312 * 175.39555 * 11 10 9 13 13 O 1.21566 * 119.99646 * 5.06977 * 12 11 10 14 14 C 1.47783 * 120.00191 * 185.06836 * 12 11 10 15 15 N 1.32872 * 119.77133 * 354.49806 * 14 12 11 16 16 C 1.31356 * 121.70371 * 179.71184 * 15 14 12 17 17 C 1.38889 * 121.04561 * 0.56328 * 16 15 14 18 18 Br 1.89102 * 120.28539 * 179.74550 * 17 16 15 19 19 C 1.38414 * 119.42681 * 359.72558 * 17 16 15 20 20 C 1.39289 * 118.43192 * 0.02562 * 19 17 16 21 21 O 1.35649 * 120.53603 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50323 * 232.57340 * 9 7 2 23 23 C 1.52998 * 117.50228 * 301.23793 * 9 7 2 24 24 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47632 * 304.74471 * 10 9 7 26 26 H 1.08997 * 109.46835 * 184.74216 * 10 9 7 27 27 H 0.97003 * 120.00070 * 355.40078 * 11 10 9 28 28 H 1.07988 * 119.47618 * 180.29049 * 16 15 14 29 29 H 1.08003 * 120.78553 * 180.02562 * 19 17 16 30 30 H 0.96696 * 114.00038 * 270.02425 * 21 20 19 31 31 H 1.09000 * 117.50253 * 215.01074 * 22 9 7 32 32 H 1.09001 * 117.49753 * 0.02562 * 22 9 7 33 33 H 1.08996 * 117.49897 * 359.97074 * 23 9 7 34 34 H 1.08997 * 117.49926 * 144.97482 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4703 2.0616 -1.3998 5 1 1.4599 2.6449 0.7262 6 1 3.5595 1.4327 0.6736 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0185 9 6 3.5113 -1.1942 -0.0240 10 6 4.1934 -1.1061 1.3427 11 7 3.8848 -2.3083 2.1209 12 6 4.4555 -2.4950 3.3276 13 8 5.1534 -1.6249 3.8110 14 6 4.2329 -3.7575 4.0629 15 7 3.3835 -4.6596 3.5830 16 6 3.1612 -5.7964 4.2023 17 6 3.8009 -6.0980 5.3976 18 35 3.4593 -7.7381 6.2747 19 6 4.6909 -5.1878 5.9411 20 6 4.9134 -3.9918 5.2628 21 8 5.7763 -3.0693 5.7572 22 6 4.2003 -2.0295 -1.1049 23 6 4.1988 -0.5019 -1.2026 24 1 -0.4850 0.8400 -0.0004 25 1 3.8304 -0.2263 1.8740 26 1 5.2720 -1.0286 1.2061 27 1 3.2698 -2.9701 1.7678 28 1 2.4667 -6.5059 3.7775 29 1 5.2007 -5.4000 6.8693 30 1 5.3659 -2.4246 6.3496 31 1 5.1394 -2.5165 -0.8424 32 1 3.5636 -2.5788 -1.7986 33 1 3.5612 -0.0468 -1.9605 34 1 5.1368 0.0165 -1.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433968938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -8.530789 kcal Electronic energy + Delta-G solvation = -20969.948246 eV Core-core repulsion = 17529.565165 eV Total energy + Delta-G solvation = -3440.383081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99218 -38.80892 -37.53898 -36.96233 -33.80115 -33.21121 -32.13288 -31.11443 -30.04293 -26.90219 -25.41942 -24.31306 -23.39348 -21.74501 -20.46064 -19.37797 -18.57026 -17.86371 -17.39540 -16.39056 -15.84480 -15.45309 -15.10185 -15.04753 -14.48168 -14.12832 -13.81125 -13.71970 -13.19453 -12.92637 -12.77966 -12.43895 -12.15660 -11.78985 -11.59479 -11.16665 -10.81038 -10.78560 -10.53132 -10.22569 -10.18216 -9.94841 -9.71077 -9.43949 -9.20041 -9.12893 -8.67688 -8.58824 -8.32728 -6.15908 -4.20676 0.14629 0.70506 1.04302 2.68905 3.27495 3.34272 3.38087 3.43986 3.57671 3.82205 4.03998 4.32526 4.39118 4.53818 4.80725 4.92460 5.00546 5.12807 5.38522 5.54921 5.66935 5.94178 6.01078 6.06134 6.20086 6.42580 6.46117 6.69650 6.94557 7.02032 7.07846 7.26268 7.43521 7.66817 8.08824 8.41353 8.59808 8.85374 9.46922 10.95350 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.002903 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.439937 B = 9642.574902 C =10139.159834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.153 3.847 11 N -0.677 5.677 12 C 0.556 3.444 13 O -0.533 6.533 14 C 0.077 3.923 15 N -0.424 5.424 16 C 0.123 3.877 17 C -0.117 4.117 18 Br -0.026 7.026 19 C -0.085 4.085 20 C 0.124 3.876 21 O -0.465 6.465 22 C -0.177 4.177 23 C -0.192 4.192 24 H 0.265 0.735 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.416 0.584 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.401 0.599 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -14.964 13.809 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.018 4.018 10 C 0.030 3.970 11 N -0.326 5.326 12 C 0.339 3.661 13 O -0.411 6.411 14 C -0.063 4.063 15 N -0.137 5.137 16 C -0.039 4.039 17 C -0.199 4.199 18 Br 0.058 6.942 19 C -0.113 4.113 20 C 0.074 3.926 21 O -0.275 6.275 22 C -0.214 4.214 23 C -0.230 4.230 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.253 0.747 28 H 0.192 0.808 29 H 0.173 0.827 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.125 -14.865 13.331 21.557 hybrid contribution 0.197 1.010 0.683 1.235 sum 8.322 -13.855 14.014 21.392 Atomic orbital electron populations 1.69883 1.06379 1.27228 1.49596 1.24966 0.94571 0.99095 0.93624 0.86876 0.80752 0.83343 0.78475 1.20377 1.22038 1.18092 1.20202 0.85982 0.94604 1.51990 0.90234 1.19601 0.95405 1.00938 0.85849 1.21271 0.97192 0.86403 0.92117 1.45788 1.45074 1.24535 1.17167 1.17594 0.81318 0.85015 0.82138 1.90786 1.39731 1.42722 1.67841 1.22189 0.93860 0.95633 0.94574 1.67868 1.13106 1.01223 1.31462 1.22966 0.97037 0.93892 0.90007 1.23142 1.02572 0.95236 0.98980 1.96789 1.95020 1.24763 1.77605 1.21935 0.96057 0.92738 1.00555 1.19267 0.90397 0.90498 0.92480 1.84754 1.33287 1.42661 1.66840 1.22839 1.01058 0.92880 1.04630 1.22960 1.01381 0.95147 1.03502 0.92488 0.91483 0.93295 0.74708 0.80770 0.82662 0.73987 0.90903 0.89307 0.89091 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.20 24.87 -169.99 -4.23 16.97 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -5.92 5.75 56.52 0.32 -5.60 16 7 C -0.49 -12.88 9.17 -34.44 -0.32 -13.20 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C -0.02 -0.37 0.84 -155.66 -0.13 -0.50 16 10 C 0.15 3.24 5.13 -4.04 -0.02 3.22 16 11 N -0.68 -13.18 5.46 -61.27 -0.33 -13.52 16 12 C 0.56 10.34 7.79 -12.36 -0.10 10.24 16 13 O -0.53 -10.91 15.16 -16.59 -0.25 -11.16 16 14 C 0.08 1.18 6.76 -82.89 -0.56 0.62 16 15 N -0.42 -6.08 9.55 -9.69 -0.09 -6.17 16 16 C 0.12 1.38 10.94 -17.51 -0.19 1.18 16 17 C -0.12 -1.16 6.25 -39.28 -0.25 -1.41 16 18 Br -0.03 -0.21 33.73 -68.01 -2.29 -2.51 16 19 C -0.08 -0.85 9.88 -39.13 -0.39 -1.24 16 20 C 0.12 1.58 6.74 -38.56 -0.26 1.32 16 21 O -0.47 -5.84 11.59 -40.55 -0.47 -6.31 16 22 C -0.18 -3.42 9.96 -26.70 -0.27 -3.69 16 23 C -0.19 -3.92 7.59 -26.69 -0.20 -4.13 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.07 1.54 6.68 -51.93 -0.35 1.19 16 26 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 27 H 0.42 8.00 7.66 -40.82 -0.31 7.69 16 28 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.40 3.48 9.06 45.56 0.41 3.89 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.09 1.94 7.26 -51.93 -0.38 1.57 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -31.08 316.43 -7.69 -38.77 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -2.79 Total: 10.17 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.77 Total: -5.45 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.35 Total: -45.25 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.72 Total: -17.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.23 Total: 16.97 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -2.29 Total: -2.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.08 -7.69 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433968938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.241 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds