Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48503 * 109.47006 * 271.24137 * 3 2 1 5 5 H 1.48496 * 109.46898 * 31.24307 * 3 2 1 6 6 H 1.48502 * 109.46883 * 151.24203 * 3 2 1 7 7 C 1.37882 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99922 * 358.92781 * 7 2 1 9 9 C 1.50699 * 120.00149 * 178.92223 * 7 2 1 10 10 C 1.53006 * 115.54466 * 86.90334 * 9 7 2 11 11 N 1.46502 * 109.47032 * 64.74293 * 10 9 7 12 12 C 1.34777 * 120.00312 * 175.39555 * 11 10 9 13 13 O 1.21566 * 119.99646 * 5.06977 * 12 11 10 14 14 C 1.47783 * 120.00191 * 185.06836 * 12 11 10 15 15 N 1.32872 * 119.77133 * 354.49806 * 14 12 11 16 16 C 1.31356 * 121.70371 * 179.71184 * 15 14 12 17 17 C 1.38889 * 121.04561 * 0.56328 * 16 15 14 18 18 Br 1.89102 * 120.28539 * 179.74550 * 17 16 15 19 19 C 1.38414 * 119.42681 * 359.72558 * 17 16 15 20 20 C 1.39289 * 118.43192 * 0.02562 * 19 17 16 21 21 O 1.35649 * 120.53603 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50323 * 232.57340 * 9 7 2 23 23 C 1.52998 * 117.50228 * 301.23793 * 9 7 2 24 24 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47632 * 304.74471 * 10 9 7 26 26 H 1.08997 * 109.46835 * 184.74216 * 10 9 7 27 27 H 0.97003 * 120.00070 * 355.40078 * 11 10 9 28 28 H 1.07988 * 119.47618 * 180.29049 * 16 15 14 29 29 H 1.08003 * 120.78553 * 180.02562 * 19 17 16 30 30 H 0.96696 * 114.00038 * 270.02425 * 21 20 19 31 31 H 1.09000 * 117.50253 * 215.01074 * 22 9 7 32 32 H 1.09001 * 117.49753 * 0.02562 * 22 9 7 33 33 H 1.08996 * 117.49897 * 359.97074 * 23 9 7 34 34 H 1.08997 * 117.49926 * 144.97482 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4703 2.0616 -1.3998 5 1 1.4599 2.6449 0.7262 6 1 3.5595 1.4327 0.6736 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0185 9 6 3.5113 -1.1942 -0.0240 10 6 4.1934 -1.1061 1.3427 11 7 3.8848 -2.3083 2.1209 12 6 4.4555 -2.4950 3.3276 13 8 5.1534 -1.6249 3.8110 14 6 4.2329 -3.7575 4.0629 15 7 3.3835 -4.6596 3.5830 16 6 3.1612 -5.7964 4.2023 17 6 3.8009 -6.0980 5.3976 18 35 3.4593 -7.7381 6.2747 19 6 4.6909 -5.1878 5.9411 20 6 4.9134 -3.9918 5.2628 21 8 5.7763 -3.0693 5.7572 22 6 4.2003 -2.0295 -1.1049 23 6 4.1988 -0.5019 -1.2026 24 1 -0.4850 0.8400 -0.0004 25 1 3.8304 -0.2263 1.8740 26 1 5.2720 -1.0286 1.2061 27 1 3.2698 -2.9701 1.7678 28 1 2.4667 -6.5059 3.7775 29 1 5.2007 -5.4000 6.8693 30 1 5.3659 -2.4246 6.3496 31 1 5.1394 -2.5165 -0.8424 32 1 3.5636 -2.5788 -1.7986 33 1 3.5612 -0.0468 -1.9605 34 1 5.1368 0.0165 -1.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433968938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -31.128737 kcal Electronic energy + Delta-G solvation = -20970.928167 eV Core-core repulsion = 17529.565165 eV Total energy + Delta-G solvation = -3441.363001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03204 -40.21047 -38.75009 -38.35535 -35.13367 -34.35674 -34.17814 -32.00640 -30.99738 -28.52601 -27.26632 -25.39305 -24.40475 -23.34932 -21.77476 -21.13368 -19.56184 -19.19692 -18.52880 -18.07078 -17.05233 -16.74527 -16.63579 -16.51633 -15.87935 -15.44488 -15.09309 -14.76519 -14.65114 -14.47010 -14.20739 -13.92233 -13.79708 -13.08541 -12.72518 -12.67362 -12.46069 -12.19242 -11.97367 -11.66206 -11.56381 -11.36255 -10.98767 -10.80103 -10.70457 -10.62229 -10.33544 -10.13835 -9.84358 -8.28813 -6.35845 -0.84262 -0.16172 0.24152 1.35065 1.40445 1.50598 1.52414 2.05265 2.37440 2.46026 2.84725 2.99227 3.06624 3.24132 3.52654 3.59873 3.82303 4.00279 4.08236 4.34921 4.41276 4.47235 4.51148 4.65026 4.80801 4.86497 5.06523 5.08448 5.27590 5.45119 5.50135 5.69628 6.29108 6.31378 6.55339 6.66379 6.73668 7.13274 7.34719 8.85958 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.002903 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.439937 B = 9642.574902 C =10139.159834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.302 1.302 6 H -0.239 1.239 7 C -0.480 4.480 8 H 0.042 0.958 9 C -0.041 4.041 10 C 0.162 3.838 11 N -0.684 5.684 12 C 0.555 3.445 13 O -0.558 6.558 14 C 0.044 3.956 15 N -0.448 5.448 16 C 0.120 3.880 17 C -0.107 4.107 18 Br 0.001 6.999 19 C -0.072 4.072 20 C 0.127 3.873 21 O -0.477 6.477 22 C -0.154 4.154 23 C -0.187 4.187 24 H 0.265 0.735 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.415 0.585 28 H 0.197 0.803 29 H 0.186 0.814 30 H 0.416 0.584 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.896 -16.229 14.832 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.229 1.229 6 H -0.162 1.162 7 C -0.518 4.518 8 H 0.060 0.940 9 C -0.042 4.042 10 C 0.039 3.961 11 N -0.333 5.333 12 C 0.340 3.660 13 O -0.438 6.438 14 C -0.093 4.093 15 N -0.161 5.161 16 C -0.043 4.043 17 C -0.189 4.189 18 Br 0.086 6.914 19 C -0.099 4.099 20 C 0.077 3.923 21 O -0.290 6.290 22 C -0.192 4.192 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.251 0.749 28 H 0.214 0.786 29 H 0.203 0.797 30 H 0.277 0.723 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.125 -16.141 14.359 23.859 hybrid contribution -0.462 1.178 0.460 1.347 sum 9.663 -14.963 14.819 23.170 Atomic orbital electron populations 1.70019 1.08139 1.27918 1.52288 1.25721 0.95114 1.02520 0.93787 0.86021 0.80169 0.79204 0.79044 1.19111 1.22896 1.16197 1.20339 0.88471 0.92905 1.50053 0.93957 1.19440 0.93056 1.04408 0.87295 1.21021 0.97594 0.86299 0.91228 1.45786 1.45606 1.24076 1.17787 1.18064 0.80298 0.85972 0.81634 1.90748 1.40712 1.43990 1.68305 1.21776 0.96514 0.95105 0.95940 1.67756 1.13411 1.02214 1.32684 1.23362 0.97324 0.93199 0.90438 1.23286 1.01338 0.95966 0.98298 1.96839 1.94836 1.22853 1.76888 1.22176 0.95510 0.91233 1.01029 1.19316 0.89782 0.91371 0.91812 1.84703 1.33737 1.43250 1.67283 1.22859 1.01449 0.92569 1.02277 1.23029 1.01840 0.96068 1.01576 0.92647 0.93894 0.91888 0.74858 0.78602 0.79673 0.72285 0.88194 0.89646 0.90136 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 2 C 0.03 1.50 5.47 84.66 0.46 1.97 16 3 Si 0.93 43.88 24.87 68.60 1.71 45.59 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.24 -10.48 5.75 99.48 0.57 -9.91 16 7 C -0.48 -25.83 9.17 25.60 0.23 -25.60 16 8 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 9 C -0.04 -1.77 0.84 -52.93 -0.04 -1.82 16 10 C 0.16 6.77 5.13 86.38 0.44 7.22 16 11 N -0.68 -26.89 5.46 -466.02 -2.55 -29.44 16 12 C 0.56 20.78 7.79 86.77 0.68 21.45 16 13 O -0.56 -22.90 15.16 17.02 0.26 -22.64 16 14 C 0.04 1.34 6.76 41.92 0.28 1.63 16 15 N -0.45 -12.66 9.55 -184.56 -1.76 -14.42 16 16 C 0.12 2.48 10.94 84.92 0.93 3.41 16 17 C -0.11 -1.84 6.25 22.47 0.14 -1.70 16 18 Br 0.00 0.01 33.73 -20.37 -0.69 -0.68 16 19 C -0.07 -1.25 9.88 22.56 0.22 -1.03 16 20 C 0.13 3.09 6.74 22.93 0.15 3.24 16 21 O -0.48 -11.39 11.59 -68.70 -0.80 -12.18 16 22 C -0.15 -5.67 9.96 30.62 0.30 -5.37 16 23 C -0.19 -7.23 7.59 30.62 0.23 -7.00 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.04 1.97 6.68 -2.39 -0.02 1.96 16 26 H 0.06 2.43 8.09 -2.39 -0.02 2.41 16 27 H 0.41 16.35 7.66 -92.71 -0.71 15.64 16 28 H 0.20 3.01 8.06 -2.92 -0.02 2.98 16 29 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.42 6.80 9.06 -74.06 -0.67 6.13 16 31 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.08 3.29 7.26 -2.39 -0.02 3.27 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -68.67 316.43 0.16 -68.50 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.35 Total: 26.20 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.04 Total: -3.60 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.01 Total: -101.19 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.54 Total: -34.82 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.71 Total: 45.59 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -68.67 0.16 -68.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433968938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.374 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds