Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46737 * 2 1 4 4 C 1.50703 * 109.47030 * 240.00428 * 2 1 3 5 5 H 1.07997 * 119.99822 * 240.00195 * 4 2 1 6 6 C 1.37879 * 120.00321 * 59.99488 * 4 2 1 7 7 N 1.31515 * 119.99641 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47529 * 89.99958 * 8 6 4 10 10 H 1.48503 * 109.47002 * 210.00206 * 8 6 4 11 11 H 1.48506 * 109.47090 * 329.99695 * 8 6 4 12 12 N 1.46496 * 109.47219 * 120.00173 * 2 1 3 13 13 S 1.65600 * 119.99807 * 265.00057 * 12 2 1 14 14 O 1.42106 * 106.40346 * 311.45981 * 13 12 2 15 15 O 1.42101 * 106.40034 * 178.54380 * 13 12 2 16 16 C 1.76198 * 107.21964 * 65.00147 * 13 12 2 17 17 C 1.39039 * 120.06278 * 90.00172 * 16 13 12 18 18 N 1.31386 * 121.79501 * 179.97438 * 17 16 13 19 19 C 1.33348 * 121.22433 * 359.97438 * 18 17 16 20 20 N 1.34044 * 121.74618 * 179.97438 * 19 18 17 21 21 C 1.31758 * 120.49379 * 180.02562 * 20 19 18 22 22 O 1.35383 * 118.56231 * 179.97438 * 21 20 19 23 23 N 1.32881 * 122.87886 * 359.97438 * 21 20 19 24 24 C 1.32367 * 121.32918 * 359.97438 * 23 21 20 25 25 O 1.35247 * 120.85854 * 180.02562 * 24 23 21 26 26 C 1.41406 * 118.27705 * 0.02562 * 24 23 21 27 27 C 1.36943 * 120.06290 * 269.97592 * 16 13 12 28 28 H 1.09002 * 109.47622 * 60.00432 * 1 2 3 29 29 H 1.09012 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47641 * 299.99578 * 1 2 3 31 31 H 0.97005 * 120.00017 * 179.97438 * 7 6 4 32 32 H 0.96990 * 120.00123 * 85.00288 * 12 2 1 33 33 H 1.08004 * 119.10335 * 359.97219 * 17 16 13 34 34 H 0.96699 * 113.99847 * 90.00156 * 22 21 20 35 35 H 0.96699 * 114.00355 * 269.98294 * 25 24 23 36 36 H 1.07996 * 120.98771 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9425 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0183 -0.6906 1.1961 13 16 2.4121 0.1772 2.5504 14 8 3.2436 1.2444 2.1155 15 8 2.8125 -0.7698 3.5314 16 6 0.9275 0.9147 3.1474 17 6 0.1330 0.2365 4.0651 18 7 -0.9802 0.7544 4.5329 19 6 -1.3979 1.9601 4.1456 20 7 -2.5320 2.4982 4.6157 21 6 -2.9219 3.6915 4.2157 22 8 -4.0740 4.1973 4.7153 23 7 -2.2338 4.4204 3.3433 24 6 -1.1003 3.9796 2.8208 25 8 -0.4073 4.7296 1.9340 26 6 -0.6327 2.7042 3.2138 27 6 0.5541 2.1571 2.7088 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7084 1.1613 -3.4844 32 1 2.1110 -1.6561 1.1948 33 1 0.4393 -0.7427 4.4026 34 1 -3.9584 4.7140 5.5245 35 1 -0.6555 4.5780 1.0118 36 1 1.1576 2.6998 1.9963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267601521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -55.622885 kcal Electronic energy + Delta-G solvation = -27572.332068 eV Core-core repulsion = 23378.671064 eV Total energy + Delta-G solvation = -4193.661004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10527 -39.45556 -38.67643 -37.01485 -36.71223 -35.68714 -35.58956 -34.01102 -32.70065 -32.36741 -30.86623 -28.54795 -25.77003 -25.45573 -25.11489 -23.24676 -21.21055 -20.98251 -19.64461 -19.39419 -18.60912 -18.33530 -17.59287 -17.18275 -16.64863 -16.20476 -16.11178 -15.68855 -15.35318 -14.87530 -14.70156 -14.59427 -13.76129 -13.58540 -13.03670 -12.90228 -12.78019 -12.41457 -12.38549 -12.02106 -11.89344 -11.79654 -11.72777 -11.66320 -11.38406 -11.27955 -11.11692 -10.77628 -10.56598 -10.31373 -10.24528 -10.06779 -9.50511 -9.43140 -9.34182 -8.83047 -8.50166 -6.29584 -4.36254 -0.54746 -0.04649 0.66864 1.21780 2.12286 2.34489 2.93680 3.17401 3.25206 3.27503 3.36320 3.46855 3.57524 3.96526 3.99096 4.05663 4.24162 4.38788 4.57284 4.74775 4.79709 5.04573 5.15158 5.26454 5.48042 5.84487 6.06847 6.19102 6.48476 6.54829 6.74969 6.82441 6.97769 7.16350 7.34358 7.45103 7.64031 7.67733 7.79305 8.05942 8.66316 9.30791 10.76980 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.004058 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.124275 B = 6899.088878 C = 8092.897322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.266 3.734 3 H 0.052 0.948 4 C -0.521 4.521 5 H 0.067 0.933 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 N -1.093 6.093 13 S 2.694 3.306 14 O -0.950 6.950 15 O -0.969 6.969 16 C -0.746 4.746 17 C 0.270 3.730 18 N -0.479 5.479 19 C 0.409 3.591 20 N -0.520 5.520 21 C 0.562 3.438 22 O -0.451 6.451 23 N -0.564 5.564 24 C 0.474 3.526 25 O -0.463 6.463 26 C -0.266 4.266 27 C 0.121 3.879 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.004 0.996 31 H 0.265 0.735 32 H 0.414 0.586 33 H 0.189 0.811 34 H 0.418 0.582 35 H 0.428 0.572 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 4.971 10.299 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.561 4.561 5 H 0.085 0.915 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.856 5.856 13 S 2.778 3.222 14 O -0.940 6.940 15 O -0.959 6.959 16 C -0.831 4.831 17 C 0.094 3.906 18 N -0.190 5.190 19 C 0.163 3.837 20 N -0.250 5.250 21 C 0.255 3.745 22 O -0.255 6.255 23 N -0.301 5.301 24 C 0.272 3.728 25 O -0.274 6.274 26 C -0.276 4.276 27 C 0.092 3.908 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.206 0.794 34 H 0.279 0.721 35 H 0.292 0.708 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.083 5.330 11.625 13.762 hybrid contribution 0.466 -0.272 -1.836 1.913 sum -4.616 5.058 9.789 11.947 Atomic orbital electron populations 1.22345 0.98688 1.00454 1.00461 1.18680 0.90562 0.93236 0.81311 0.93012 1.21184 1.32071 1.13299 0.89550 0.91471 1.24896 0.94723 0.94966 0.99164 1.69820 1.36211 1.22647 1.24158 0.86408 0.79345 0.79280 0.81900 1.20564 1.21034 1.19660 1.55539 1.83528 1.19460 1.27047 1.02060 0.73321 0.73820 0.72996 1.93605 1.62195 1.56745 1.81416 1.93553 1.80672 1.61439 1.60238 1.32302 1.28253 1.08109 1.14400 1.22942 0.85000 0.97753 0.84885 1.67828 1.15282 1.09426 1.26457 1.19034 0.87889 0.89908 0.86837 1.67929 1.15395 1.13347 1.28300 1.19757 0.84080 0.84475 0.86187 1.84696 1.22939 1.71210 1.46623 1.67478 1.08230 1.38499 1.15891 1.19252 0.83744 0.83210 0.86561 1.84571 1.58554 1.63601 1.20624 1.20468 1.02126 0.97735 1.07290 1.21307 0.89810 0.90843 0.88820 0.88558 0.94250 0.97746 0.92466 0.75153 0.79404 0.72107 0.70750 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.29 37.16 0.35 -2.85 16 2 C 0.27 5.59 2.89 -69.09 -0.20 5.39 16 3 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 4 C -0.52 -12.48 8.76 -34.44 -0.30 -12.78 16 5 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.07 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -22.25 11.32 55.43 0.63 -21.62 16 8 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 N -1.09 -18.84 5.46 -5.88 -0.03 -18.87 16 13 S 2.69 43.02 5.72 -107.50 -0.61 42.41 16 14 O -0.95 -17.80 16.64 -57.17 -0.95 -18.75 16 15 O -0.97 -16.06 17.27 -57.17 -0.99 -17.04 16 16 C -0.75 -10.71 5.05 -39.75 -0.20 -10.91 16 17 C 0.27 3.71 10.64 -17.45 -0.19 3.52 16 18 N -0.48 -7.41 10.44 -12.62 -0.13 -7.54 16 19 C 0.41 6.35 7.66 -157.84 -1.21 5.14 16 20 N -0.52 -7.90 10.53 -14.42 -0.15 -8.05 16 21 C 0.56 7.43 8.64 -91.24 -0.79 6.64 16 22 O -0.45 -4.62 13.63 -17.84 -0.24 -4.87 16 23 N -0.56 -7.44 10.45 -14.42 -0.15 -7.59 16 24 C 0.47 6.01 7.89 -16.12 -0.13 5.88 16 25 O -0.46 -4.76 12.96 -17.44 -0.23 -4.98 16 26 C -0.27 -3.74 5.75 -106.67 -0.61 -4.35 16 27 C 0.12 1.68 8.21 -39.35 -0.32 1.36 16 28 H 0.10 2.15 6.07 -51.93 -0.32 1.84 16 29 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.00 0.06 6.16 -51.93 -0.32 -0.26 16 31 H 0.27 6.37 8.31 -40.82 -0.34 6.04 16 32 H 0.41 6.38 8.83 -34.47 -0.30 6.08 16 33 H 0.19 2.04 7.58 -52.48 -0.40 1.65 16 34 H 0.42 1.85 9.06 45.56 0.41 2.26 16 35 H 0.43 2.53 9.06 45.56 0.41 2.95 16 36 H 0.17 2.19 7.37 -52.49 -0.39 1.80 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -33.26 331.28 -7.85 -41.11 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -1.26 Total: 7.91 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.70 Total: -1.45 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.16 Total: -63.68 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.41 Total: -45.65 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 43.02 SS G_CDS: -0.61 Total: 42.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.26 -7.85 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267601521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.513 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds