Wall clock time and date at job start Sat Apr 11 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47206 * 269.99708 * 3 2 1 5 5 H 1.48498 * 109.47022 * 29.99480 * 3 2 1 6 6 H 1.48504 * 109.47298 * 149.99941 * 3 2 1 7 7 C 1.37882 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00260 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99587 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46811 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.76200 * 100.00126 * 180.02562 * 13 12 11 15 15 N 1.31546 * 126.45019 * 0.17896 * 14 13 12 16 16 N 1.28426 * 110.49886 * 180.28543 * 15 14 13 17 17 N 1.28903 * 110.33718 * 359.72800 * 16 15 14 18 18 N 1.35386 * 126.45404 * 180.02562 * 14 13 12 19 19 C 1.46505 * 127.38557 * 359.97438 * 18 14 13 20 20 C 1.52997 * 109.47212 * 269.70875 * 19 18 14 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 18 22 22 C 1.33395 * 125.20149 * 89.99725 * 21 20 19 23 23 C 1.38425 * 114.92071 * 179.97438 * 22 21 20 24 24 C 1.33393 * 114.91923 * 0.02562 * 23 22 21 25 25 S 1.75877 * 125.20456 * 269.69723 * 21 20 19 26 26 H 0.97001 * 119.99698 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46625 * 60.00079 * 9 7 2 28 28 H 1.08996 * 109.47209 * 300.00118 * 9 7 2 29 29 H 1.08994 * 109.47275 * 60.00836 * 11 10 9 30 30 H 1.09004 * 109.47338 * 300.00021 * 11 10 9 31 31 H 1.09001 * 109.47155 * 60.00204 * 12 11 10 32 32 H 1.09000 * 109.46692 * 300.00381 * 12 11 10 33 33 H 1.09002 * 109.47068 * 29.70935 * 19 18 14 34 34 H 1.09001 * 109.47372 * 149.71022 * 19 18 14 35 35 H 1.09002 * 109.47153 * 300.00008 * 20 19 18 36 36 H 1.08998 * 109.47533 * 59.99637 * 20 19 18 37 37 H 1.08001 * 122.53822 * 359.96346 * 22 21 20 38 38 H 1.07994 * 122.53927 * 180.02562 * 23 22 21 39 39 H 1.07997 * 125.19905 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0022 11 6 5.4124 -2.6542 0.0022 12 6 5.8068 -4.1325 0.0028 13 16 7.6112 -4.2755 0.0036 14 6 7.7792 -6.0295 0.0034 15 7 6.8004 -6.9083 -0.0006 16 7 7.2694 -8.1039 0.0065 17 7 8.5582 -8.0795 0.0096 18 7 8.9399 -6.7264 0.0043 19 6 10.3017 -6.1864 0.0051 20 6 10.7795 -6.0054 -1.4370 21 6 12.1801 -5.4493 -1.4362 22 6 13.2970 -6.1786 -1.4296 23 6 14.4718 -5.4463 -1.4309 24 6 14.3088 -4.1224 -1.4379 25 16 12.5922 -3.7395 -1.4514 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 5.8151 -2.1701 0.8918 30 1 5.8151 -2.1714 -0.8882 31 1 5.4041 -4.6164 -0.8870 32 1 5.4040 -4.6157 0.8930 33 1 10.3101 -5.2226 0.5143 34 1 10.9663 -6.8772 0.5240 35 1 10.7712 -6.9691 -1.9462 36 1 10.1150 -5.3146 -1.9560 37 1 13.2856 -7.2585 -1.4236 38 1 15.4463 -5.9117 -1.4265 39 1 15.1087 -3.3968 -1.4403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338537607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:34 Heat of formation + Delta-G solvation = 81.589323 kcal Electronic energy + Delta-G solvation = -22790.285425 eV Core-core repulsion = 19181.160355 eV Total energy + Delta-G solvation = -3609.125071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.10204 -39.05414 -38.82873 -37.03575 -34.95125 -33.54930 -33.43997 -32.65601 -29.79702 -29.35769 -26.55324 -24.94258 -24.41506 -24.05258 -23.75599 -23.04608 -20.18851 -19.33258 -18.98099 -18.45820 -17.83998 -17.63804 -17.57503 -17.07916 -16.48734 -16.43659 -15.90270 -15.40910 -14.99065 -14.95612 -14.75200 -14.50769 -14.28214 -14.05687 -13.68970 -13.50975 -13.23574 -13.19301 -13.15595 -13.02160 -12.57139 -12.52716 -12.41747 -12.23631 -12.13046 -11.92005 -11.79848 -11.74150 -11.59640 -11.37070 -10.92221 -10.42965 -9.64596 -9.40049 -9.18770 -8.35675 -6.44755 -0.55736 -0.38381 0.03428 0.55741 0.67865 0.94322 0.94718 1.08936 1.36434 1.40096 1.50615 1.83254 2.31532 2.97025 3.01052 3.08668 3.50929 3.62577 3.70356 3.80278 3.87651 3.94844 4.03535 4.11479 4.27168 4.32714 4.49078 4.54702 4.59898 4.60883 4.73493 4.80622 4.81144 4.90654 5.00650 5.20067 5.37315 5.42928 5.56753 5.90411 6.58873 6.68978 7.15138 7.19277 8.81382 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.002159 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.567496 B =12967.914927 C =14933.231036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.238 1.238 7 C -0.550 4.550 8 H 0.028 0.972 9 C 0.179 3.821 10 O -0.403 6.403 11 C 0.067 3.933 12 C -0.116 4.116 13 S 0.114 5.886 14 C 0.208 3.792 15 N -0.358 5.358 16 N -0.058 5.058 17 N -0.085 5.085 18 N -0.351 5.351 19 C 0.118 3.882 20 C -0.056 4.056 21 C -0.192 4.192 22 C -0.129 4.129 23 C -0.145 4.145 24 C -0.211 4.211 25 S 0.095 5.905 26 H 0.273 0.727 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.860 -7.597 -2.011 37.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.588 4.588 8 H 0.046 0.954 9 C 0.104 3.896 10 O -0.323 6.323 11 C -0.011 4.011 12 C -0.265 4.265 13 S 0.339 5.661 14 C -0.177 4.177 15 N -0.215 5.215 16 N -0.053 5.053 17 N -0.073 5.073 18 N -0.151 5.151 19 C -0.002 4.002 20 C -0.097 4.097 21 C -0.309 4.309 22 C -0.160 4.160 23 C -0.175 4.175 24 C -0.347 4.347 25 S 0.359 5.641 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 36.084 -6.802 -2.017 36.775 hybrid contribution 0.068 -1.012 -0.039 1.015 sum 36.152 -7.814 -2.056 37.044 Atomic orbital electron populations 1.70044 1.08430 1.28833 1.50902 1.25913 0.95848 1.03663 0.93402 0.85573 0.79614 0.77071 0.79869 1.18305 1.20171 1.16123 1.21178 0.91132 0.93823 1.52632 0.95383 1.20398 0.93117 0.80271 0.95850 1.87884 1.19970 1.29050 1.95426 1.22152 0.83119 0.93306 1.02573 1.23527 0.93552 1.00864 1.08556 1.85269 1.06979 0.83667 1.90209 1.28038 0.85618 1.03464 1.00540 1.74972 1.26747 0.94890 1.24889 1.77885 1.02161 1.14658 1.10612 1.82361 1.07586 0.95539 1.21779 1.51818 1.08399 1.03734 1.51165 1.22577 0.75556 1.02356 0.99740 1.20334 0.91329 1.03017 0.95009 1.24061 0.97929 0.96445 1.12505 1.20456 0.90996 1.02187 1.02335 1.20451 1.00416 0.93098 1.03570 1.26007 0.99056 1.00414 1.09190 1.84608 1.01424 1.05451 1.72628 0.91815 0.96151 0.96236 0.91033 0.90965 0.87970 0.88027 0.85606 0.84892 0.88644 0.89641 0.82849 0.82424 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 2 C 0.01 0.56 5.47 84.66 0.46 1.02 16 3 Si 0.96 41.70 27.47 68.60 1.88 43.58 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 7 C -0.55 -32.86 9.99 25.60 0.26 -32.60 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.18 8.50 4.76 71.24 0.34 8.84 16 10 O -0.40 -17.61 10.33 -148.98 -1.54 -19.15 16 11 C 0.07 1.96 5.94 71.98 0.43 2.39 16 12 C -0.12 -2.96 5.60 71.98 0.40 -2.56 16 13 S 0.11 2.04 21.78 -56.49 -1.23 0.81 16 14 C 0.21 4.73 8.15 179.85 1.47 6.20 16 15 N -0.36 -10.66 11.57 -57.41 -0.66 -11.33 16 16 N -0.06 -1.75 13.38 37.02 0.50 -1.25 16 17 N -0.09 -2.14 13.93 37.02 0.52 -1.63 16 18 N -0.35 -6.72 3.69 -347.86 -1.28 -8.00 16 19 C 0.12 1.22 6.36 86.38 0.55 1.77 16 20 C -0.06 -0.55 6.03 29.85 0.18 -0.37 16 21 C -0.19 -1.83 5.76 24.59 0.14 -1.69 16 22 C -0.13 -1.09 10.05 21.22 0.21 -0.88 16 23 C -0.15 -1.13 10.18 21.22 0.22 -0.91 16 24 C -0.21 -1.72 11.23 66.72 0.75 -0.97 16 25 S 0.10 0.95 23.33 -56.49 -1.32 -0.37 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 28 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.10 2.81 8.14 -2.40 -0.02 2.79 16 33 H 0.13 0.93 7.84 -2.39 -0.02 0.91 16 34 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 39 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -75.23 369.85 3.57 -71.65 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.01 Total: 4.00 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 5.40 Total: -19.76 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -0.64 Total: -80.78 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.54 Total: -19.15 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.58 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.55 Total: 0.45 kcal Total: -75.23 3.57 -71.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338537607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.241 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds