Wall clock time and date at job start Sat Apr 11 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35649 * 116.99585 * 2 1 4 4 C 1.39121 * 119.89013 * 359.72477 * 3 2 1 5 5 C 1.36550 * 120.25739 * 180.28439 * 4 3 2 6 6 C 1.40123 * 120.02874 * 359.97438 * 5 4 3 7 7 C 1.47070 * 120.10885 * 180.02562 * 6 5 4 8 8 O 1.21409 * 120.00016 * 353.65523 * 7 6 5 9 9 C 1.49257 * 119.99506 * 173.65441 * 7 6 5 10 10 O 1.21370 * 120.00202 * 5.28422 * 9 7 6 11 11 N 1.34782 * 119.99402 * 185.27592 * 9 7 6 12 12 C 1.46501 * 119.99419 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46754 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00320 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99746 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00353 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99726 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99890 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47040 * 60.00267 * 20 18 16 22 22 H 1.48499 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47218 * 300.00240 * 20 18 16 24 24 C 1.40128 * 119.77689 * 0.02562 * 6 5 4 25 25 C 1.37683 * 119.74503 * 359.97438 * 24 6 5 26 26 Cl 1.73605 * 120.01086 * 179.97438 * 25 24 6 27 27 H 1.09005 * 109.47238 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47482 * 299.99583 * 1 2 3 29 29 H 1.09000 * 109.47430 * 60.00571 * 1 2 3 30 30 H 1.07997 * 119.87524 * 0.25104 * 4 3 2 31 31 H 1.08003 * 119.98942 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00348 * 0.02562 * 11 9 7 33 33 H 1.08999 * 109.47384 * 300.00236 * 12 11 9 34 34 H 1.08999 * 109.47529 * 60.00125 * 12 11 9 35 35 H 0.96995 * 119.99561 * 0.02562 * 15 13 12 36 36 H 0.97004 * 119.99805 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.12393 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2848 2.3739 -0.0058 5 6 1.8968 3.5946 -0.0117 6 6 3.2956 3.6777 -0.0114 7 6 3.9566 4.9914 -0.0172 8 8 3.2960 6.0028 -0.1384 9 6 5.4396 5.0812 0.1260 10 8 6.1092 4.0693 0.1508 11 7 6.0350 6.2861 0.2277 12 6 7.4906 6.3743 0.3677 13 6 7.8994 7.8217 0.4617 14 8 7.0577 8.6938 0.4166 15 7 9.2004 8.1472 0.5968 16 6 9.5723 9.4639 0.6817 17 1 8.8228 10.2405 0.6408 18 6 10.9135 9.7994 0.8205 19 7 11.8255 8.8546 0.8698 20 14 11.4203 11.5936 0.9370 21 1 10.7708 12.2157 2.1187 22 1 12.8958 11.6831 1.0783 23 1 10.9971 12.3085 -0.2939 24 6 4.0624 2.5048 -0.0056 25 6 3.4356 1.2789 0.0004 26 17 4.3789 -0.1785 0.0069 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.2065 2.3129 -0.0062 31 1 1.3026 4.4964 -0.0166 32 1 5.4997 7.0948 0.2082 33 1 7.8012 5.8499 1.2714 34 1 7.9674 5.9172 -0.4994 35 1 9.8734 7.4497 0.6331 36 1 12.7618 9.0888 0.9670 37 1 5.1408 2.5624 -0.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344122724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:39 Heat of formation + Delta-G solvation = -132.486676 kcal Electronic energy + Delta-G solvation = -25400.311155 eV Core-core repulsion = 21168.980630 eV Total energy + Delta-G solvation = -4231.330526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06731 -41.13369 -40.30751 -39.48751 -38.45034 -37.39235 -36.32172 -35.47277 -33.39142 -32.22918 -31.80200 -29.86276 -28.47537 -27.08173 -25.88244 -23.79600 -23.31887 -21.51780 -21.24079 -20.11110 -19.41174 -19.18150 -18.17783 -17.59224 -17.21569 -17.13202 -16.87061 -16.79971 -16.49071 -16.06529 -15.99262 -15.90169 -15.35620 -15.08293 -14.92194 -14.74608 -14.18064 -14.03250 -13.97043 -13.59918 -13.54725 -13.31830 -12.90952 -12.60846 -12.53491 -12.47423 -12.13665 -12.13586 -12.11834 -11.97397 -11.57494 -10.64213 -10.56032 -10.42499 -10.13205 -10.10317 -9.42919 -8.51591 -6.01708 -0.86341 0.04581 0.41667 1.08264 1.37719 1.41707 1.47753 1.55556 1.79423 1.89946 2.08912 2.28192 2.51554 2.92999 3.09181 3.15519 3.48658 3.65511 3.76823 4.01738 4.15848 4.19451 4.35521 4.37964 4.38681 4.41802 4.61267 4.71296 4.77527 4.90953 5.01646 5.13257 5.37592 5.40829 5.69943 5.90667 6.10094 6.22724 6.47281 6.75133 7.02996 7.42342 7.93563 8.64723 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.001960 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.274940 B =14285.520587 C =15251.713454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.314 6.314 3 C 0.181 3.819 4 C -0.206 4.206 5 C -0.002 4.002 6 C -0.211 4.211 7 C 0.408 3.592 8 O -0.434 6.434 9 C 0.484 3.516 10 O -0.526 6.526 11 N -0.681 5.681 12 C 0.116 3.884 13 C 0.428 3.572 14 O -0.626 6.626 15 N -0.556 5.556 16 C -0.339 4.339 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.913 5.913 20 Si 0.996 3.004 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.023 4.023 25 C -0.109 4.109 26 Cl -0.056 7.056 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.401 0.599 36 H 0.280 0.720 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 -19.168 -1.619 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.133 3.867 4 C -0.225 4.225 5 C -0.020 4.020 6 C -0.214 4.214 7 C 0.283 3.717 8 O -0.308 6.308 9 C 0.268 3.732 10 O -0.404 6.404 11 N -0.336 5.336 12 C -0.011 4.011 13 C 0.215 3.785 14 O -0.514 6.514 15 N -0.191 5.191 16 C -0.468 4.468 17 H 0.103 0.897 18 C -0.210 4.210 19 N -0.553 5.553 20 Si 0.819 3.181 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.041 4.041 25 C -0.136 4.136 26 Cl -0.028 7.028 27 H 0.140 0.860 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.257 0.743 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.905 -19.079 -1.671 29.097 hybrid contribution 0.761 0.846 0.090 1.142 sum -21.144 -18.233 -1.581 27.964 Atomic orbital electron populations 1.23598 0.75040 1.06443 1.03347 1.86135 1.24592 1.25470 1.86357 1.19319 0.90265 0.86314 0.90848 1.21228 1.02305 0.89818 1.09109 1.21243 0.92085 0.99483 0.89203 1.19770 0.94885 0.91772 1.14936 1.22133 0.87625 0.89377 0.72579 1.90619 1.66989 1.38458 1.34716 1.20945 0.90490 0.83469 0.78344 1.90529 1.65670 1.34351 1.49885 1.45732 1.08205 1.09475 1.70143 1.21013 0.80929 0.93778 1.05341 1.20431 0.83186 0.90972 0.83883 1.90504 1.51177 1.51474 1.58293 1.41805 1.06201 1.08517 1.62588 1.19691 0.93001 0.84186 1.49965 0.89680 1.26106 0.94912 1.04212 0.95744 1.69664 1.02327 1.34664 1.48643 0.84943 0.77365 0.76744 0.79029 1.19564 1.19544 1.19592 1.22344 1.03529 0.88834 0.89403 1.20275 0.89482 0.89100 1.14777 1.98369 1.71969 1.35148 1.97271 0.85963 0.90517 0.90502 0.80101 0.82244 0.74320 0.87246 0.87287 0.76493 0.91010 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.80 113.37 1.11 1.15 16 2 O -0.31 -4.52 9.94 -89.64 -0.89 -5.41 16 3 C 0.18 3.05 6.70 22.73 0.15 3.20 16 4 C -0.21 -2.58 8.96 22.09 0.20 -2.38 16 5 C 0.00 -0.03 9.54 22.33 0.21 0.18 16 6 C -0.21 -4.71 5.88 -20.04 -0.12 -4.83 16 7 C 0.41 10.78 7.16 27.56 0.20 10.97 16 8 O -0.43 -12.48 16.49 -3.43 -0.06 -12.53 16 9 C 0.48 14.46 7.84 87.21 0.68 15.14 16 10 O -0.53 -16.47 13.41 -3.31 -0.04 -16.52 16 11 N -0.68 -22.39 5.52 -468.32 -2.59 -24.98 16 12 C 0.12 4.00 6.15 85.63 0.53 4.53 16 13 C 0.43 19.45 7.85 87.66 0.69 20.13 16 14 O -0.63 -32.64 15.24 -3.06 -0.05 -32.69 16 15 N -0.56 -27.36 5.29 -306.98 -1.62 -28.99 16 16 C -0.34 -18.54 9.68 84.04 0.81 -17.72 16 17 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 18 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 19 N -0.91 -47.83 13.05 21.66 0.28 -47.54 16 20 Si 1.00 41.54 29.55 68.60 2.03 43.56 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 C -0.02 -0.53 9.07 22.60 0.21 -0.33 16 25 C -0.11 -2.33 6.33 22.38 0.14 -2.19 16 26 Cl -0.06 -1.23 28.50 -2.72 -0.08 -1.31 16 27 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 28 H 0.08 0.15 7.66 -2.39 -0.02 0.13 16 29 H 0.08 0.15 7.64 -2.39 -0.02 0.13 16 30 H 0.18 0.86 6.27 -2.91 -0.02 0.84 16 31 H 0.16 2.11 7.66 -2.91 -0.02 2.08 16 32 H 0.42 14.66 6.92 -92.71 -0.64 14.02 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 36 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.17 4.57 4.84 -3.67 -0.02 4.55 16 Total: -1.00 -66.89 347.55 2.07 -64.82 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.20 Total: 33.70 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 5.28 Total: 27.89 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.93 Total: -101.51 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -1.04 Total: -67.15 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -66.89 2.07 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344122724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.671 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds