Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00130 * 2 1 4 4 C 1.50697 * 109.46897 * 276.81798 * 3 2 1 5 5 H 1.07992 * 120.00282 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00081 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00062 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47241 * 89.99439 * 8 6 4 10 10 H 1.48496 * 109.46912 * 209.99664 * 8 6 4 11 11 H 1.48495 * 109.46979 * 329.99752 * 8 6 4 12 12 S 1.65604 * 119.99796 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40086 * 147.39071 * 12 2 1 14 14 O 1.42092 * 106.40234 * 14.47237 * 12 2 1 15 15 N 1.65598 * 107.21972 * 260.92780 * 12 2 1 16 16 C 1.46374 * 119.65181 * 266.35579 * 15 12 2 17 17 C 1.53236 * 109.48941 * 114.88933 * 16 15 12 18 18 S 1.81739 * 108.79931 * 57.65502 * 17 16 15 19 19 O 1.42098 * 109.46918 * 61.50226 * 18 17 16 20 20 C 1.81735 * 102.30648 * 305.46328 * 18 17 16 21 21 C 1.46386 * 119.64233 * 86.33224 * 15 12 2 22 22 H 1.09009 * 109.46431 * 125.10773 * 21 15 12 23 23 C 1.50692 * 109.46995 * 5.11833 * 21 15 12 24 24 O 1.20826 * 120.00202 * 288.25520 * 23 21 15 25 25 O 1.34233 * 120.00028 * 108.25427 * 23 21 15 26 26 H 1.08996 * 109.47159 * 270.00175 * 1 2 3 27 27 H 1.08996 * 109.46683 * 30.00573 * 1 2 3 28 28 H 1.09002 * 109.46935 * 150.00382 * 1 2 3 29 29 H 1.09004 * 109.47026 * 36.81927 * 3 2 1 30 30 H 1.09004 * 109.47278 * 156.81772 * 3 2 1 31 31 H 0.96997 * 119.99486 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46748 * 354.87754 * 16 15 12 33 33 H 1.08995 * 109.46761 * 234.89316 * 16 15 12 34 34 H 1.08997 * 109.58332 * 177.45540 * 17 16 15 35 35 H 1.09004 * 109.58196 * 297.72598 * 17 16 15 36 36 H 1.09008 * 109.58485 * 174.33272 * 20 18 17 37 37 H 1.09002 * 109.58448 * 294.74068 * 20 18 17 38 38 H 0.96700 * 116.99809 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3026 1.7880 -1.4108 5 1 1.8677 1.2288 -2.2258 6 6 2.9541 2.9772 -1.6609 7 7 3.0462 3.4302 -2.8921 8 14 3.7070 3.9442 -0.2511 9 1 5.1106 3.5057 -0.0440 10 1 3.6839 5.3929 -0.5766 11 1 2.9251 3.7027 0.9880 12 16 2.2930 -1.4342 0.0006 13 8 3.4881 -1.2079 -0.7341 14 8 1.3505 -2.4417 -0.3396 15 7 2.7541 -1.7334 1.5627 16 6 4.0767 -1.3063 2.0218 17 6 3.9203 -0.2309 3.1021 18 16 2.9228 -0.9078 4.4622 19 8 3.5922 -2.0254 5.0298 20 6 1.4253 -1.4719 3.6007 21 6 1.8343 -2.4217 2.4699 22 1 2.3275 -3.2976 2.8917 23 6 0.6077 -2.8540 1.7088 24 8 -0.1977 -2.0309 1.3430 25 8 0.4097 -4.1535 1.4370 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6667 1.9947 0.6159 30 1 3.1973 1.1110 0.4046 31 1 3.5049 4.2666 -3.0680 32 1 4.6386 -0.8983 1.1816 33 1 4.6114 -2.1614 2.4352 34 1 4.9028 0.0558 3.4771 35 1 3.4217 0.6415 2.6797 36 1 0.7763 -1.9967 4.3019 37 1 0.8982 -0.6135 3.1842 38 1 -0.3917 -4.3824 0.9466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547928708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -163.815351 kcal Electronic energy + Delta-G solvation = -28402.080707 eV Core-core repulsion = 24306.879325 eV Total energy + Delta-G solvation = -4095.201381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52977 -37.53442 -36.93369 -35.99688 -35.86684 -35.56303 -35.45213 -32.42401 -32.33789 -29.62401 -28.39499 -25.59930 -25.17845 -23.17571 -21.96460 -21.50562 -19.25383 -18.45456 -17.68689 -17.39976 -17.16665 -16.84523 -16.66050 -16.12660 -15.37261 -15.29785 -15.15511 -14.94870 -14.35921 -14.32988 -13.99200 -13.67460 -13.39097 -13.03022 -12.80295 -12.64020 -12.49912 -12.38748 -12.02359 -11.93385 -11.90790 -11.64439 -11.54143 -11.39160 -11.20117 -11.02391 -10.62725 -10.58024 -10.49190 -10.29688 -10.10468 -9.67622 -9.55770 -8.65741 -8.48100 -8.12184 -6.13377 -4.13262 0.79264 1.32416 2.10678 2.15281 2.83703 3.18865 3.22456 3.22593 3.29461 3.53725 3.79613 4.20037 4.31298 4.47326 4.55549 4.73380 4.81157 5.07751 5.13793 5.15373 5.21064 5.37222 5.59118 5.62468 5.68691 5.79789 6.16165 6.26719 6.39045 6.45221 6.62107 6.81239 7.02114 7.34885 7.50912 7.95677 8.43869 8.92641 9.44457 11.00286 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.006191 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.873856 B = 4521.255443 C = 5710.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.979 5.979 3 C 0.227 3.773 4 C -0.531 4.531 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.262 1.262 12 S 2.773 3.227 13 O -0.951 6.951 14 O -0.978 6.978 15 N -1.009 6.009 16 C 0.120 3.880 17 C -0.465 4.465 18 S 1.257 4.743 19 O -0.846 6.846 20 C -0.452 4.452 21 C 0.170 3.830 22 H 0.110 0.890 23 C 0.484 3.516 24 O -0.495 6.495 25 O -0.505 6.505 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -7.419 17.591 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.822 5.822 3 C 0.104 3.896 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.532 5.532 8 Si 0.696 3.304 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.186 1.186 12 S 2.782 3.218 13 O -0.935 6.935 14 O -0.962 6.962 15 N -0.848 5.848 16 C -0.005 4.005 17 C -0.603 4.603 18 S 1.454 4.546 19 O -0.841 6.841 20 C -0.590 4.590 21 C 0.061 3.939 22 H 0.128 0.872 23 C 0.324 3.676 24 O -0.383 6.383 25 O -0.316 6.316 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.225 -7.571 17.830 19.638 hybrid contribution 0.324 -0.717 -1.104 1.356 sum -2.901 -8.289 16.726 18.892 Atomic orbital electron populations 1.21447 0.78176 1.02578 1.01483 1.57250 1.15235 1.21604 1.88069 1.19462 0.90348 0.80992 0.98824 1.21355 1.36749 1.06774 0.92180 0.90461 1.24901 0.95484 0.97123 0.95569 1.69897 1.42766 1.21408 1.19098 0.86950 0.80400 0.79875 0.83131 1.19817 1.20865 1.18641 1.02371 0.73262 0.73428 0.72760 1.93643 1.47243 1.85566 1.67022 1.93442 1.63435 1.58284 1.81019 1.58573 1.23033 1.71617 1.31555 1.21273 0.82639 0.96901 0.99717 1.28076 1.12970 1.06993 1.12305 1.70494 0.88501 1.05173 0.90394 1.93113 1.71624 1.54863 1.64531 1.28187 1.17837 1.07421 1.05524 1.20069 0.87940 0.96043 0.89824 0.87248 1.22554 0.87691 0.81281 0.76026 1.90794 1.46476 1.52237 1.48801 1.84346 1.49157 1.27399 1.70677 0.92591 0.91214 0.91223 0.94555 0.95964 0.92471 0.86598 0.89913 0.85498 0.85124 0.85696 0.84239 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.93 8.75 59.85 0.52 2.46 16 2 N -0.98 -19.46 3.23 -123.06 -0.40 -19.85 16 3 C 0.23 5.01 4.17 -5.20 -0.02 4.99 16 4 C -0.53 -14.73 9.92 -34.44 -0.34 -15.07 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 7 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 12 S 2.77 54.18 5.53 -107.50 -0.59 53.59 16 13 O -0.95 -22.17 15.81 -57.18 -0.90 -23.07 16 14 O -0.98 -19.63 11.88 -69.91 -0.83 -20.46 16 15 N -1.01 -15.00 3.15 -108.44 -0.34 -15.34 16 16 C 0.12 1.58 6.27 -3.99 -0.02 1.56 16 17 C -0.46 -4.50 6.65 37.28 0.25 -4.25 16 18 S 1.26 10.13 13.71 -107.50 -1.47 8.66 16 19 O -0.85 -11.41 18.14 -35.23 -0.64 -12.05 16 20 C -0.45 -4.09 5.77 37.28 0.21 -3.88 16 21 C 0.17 2.18 3.21 -69.03 -0.22 1.96 16 22 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 23 C 0.48 6.89 4.36 36.00 0.16 7.04 16 24 O -0.49 -7.63 10.75 -26.66 -0.29 -7.92 16 25 O -0.50 -6.47 13.04 -45.74 -0.60 -7.06 16 26 H 0.06 0.86 6.70 -51.93 -0.35 0.51 16 27 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.07 1.28 6.21 -51.93 -0.32 0.96 16 29 H 0.04 0.74 7.18 -51.93 -0.37 0.37 16 30 H 0.02 0.47 6.98 -51.93 -0.36 0.11 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.12 1.69 6.72 -51.93 -0.35 1.34 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.13 1.21 7.89 -51.93 -0.41 0.80 16 36 H 0.12 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.14 1.17 7.88 -51.93 -0.41 0.76 16 38 H 0.41 3.82 9.10 45.56 0.41 4.23 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -39.59 327.66 -8.44 -48.04 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.86 Total: 4.90 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.44 Total: -3.27 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.03 Total: -61.37 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -3.26 Total: -70.57 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Atomic # 16 Polarization: 64.31 SS G_CDS: -2.07 Total: 62.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -39.59 -8.44 -48.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547928708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.778 kcal (2) G-P(sol) polarization free energy of solvation -39.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds