Wall clock time and date at job start Sat Apr 11 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47788 * 336.34013 * 3 2 1 5 5 N 1.46494 * 109.47531 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00318 * 275.00257 * 5 4 3 7 7 C 1.50694 * 109.47144 * 274.99849 * 6 5 4 8 8 H 1.08003 * 120.00551 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00079 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00100 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99662 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47059 * 90.00071 * 11 9 7 13 13 H 1.48505 * 109.46876 * 209.99750 * 11 9 7 14 14 H 1.48501 * 109.47344 * 330.00018 * 11 9 7 15 15 S 1.65607 * 119.99713 * 95.00236 * 5 4 3 16 16 O 1.42097 * 106.40132 * 156.45958 * 15 5 4 17 17 O 1.42107 * 106.39904 * 23.54230 * 15 5 4 18 18 C 1.76199 * 107.21942 * 270.00130 * 15 5 4 19 19 C 1.38224 * 119.61932 * 149.99999 * 18 15 5 20 20 C 1.38625 * 119.16434 * 180.02562 * 19 18 15 21 21 C 1.38671 * 118.41661 * 359.97438 * 20 19 18 22 22 N 1.48027 * 120.41847 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99471 * 0.02562 * 22 21 20 24 24 O 1.21794 * 120.00267 * 179.97438 * 22 21 20 25 25 C 1.38180 * 119.16587 * 0.02562 * 21 20 19 26 26 N 1.31856 * 119.61421 * 329.73096 * 18 15 5 27 27 H 1.09000 * 109.47434 * 216.34193 * 3 2 1 28 28 H 1.09001 * 109.47368 * 96.34440 * 3 2 1 29 29 H 1.09005 * 109.46429 * 60.00343 * 4 3 2 30 30 H 1.09001 * 109.47015 * 300.00644 * 4 3 2 31 31 H 1.08998 * 109.47024 * 35.00447 * 6 5 4 32 32 H 1.09007 * 109.46904 * 154.99954 * 6 5 4 33 33 H 0.97003 * 119.99966 * 180.02562 * 10 9 7 34 34 H 1.08004 * 120.41892 * 359.97438 * 19 18 15 35 35 H 1.07993 * 120.79155 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.62043 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.3203 0.5789 5 7 4.5836 -1.3198 0.5783 6 6 5.3158 -1.7256 -0.6240 7 6 5.4603 -3.2255 -0.6418 8 1 5.0483 -3.8174 0.1622 9 6 6.1184 -3.8424 -1.6846 10 7 6.2449 -5.1513 -1.7000 11 14 6.8317 -2.8187 -3.0749 12 1 8.2289 -2.4399 -2.7443 13 1 6.8176 -3.6112 -4.3307 14 1 6.0155 -1.5912 -3.2550 15 16 5.4120 -0.8605 1.9367 16 8 6.6950 -1.4647 1.8477 17 8 4.5307 -1.0655 3.0325 18 6 5.6721 0.8786 1.8260 19 6 5.7501 1.6327 2.9818 20 6 5.9544 3.0003 2.8836 21 6 6.0738 3.5608 1.6209 22 7 6.2922 5.0164 1.4645 23 8 6.3686 5.7299 2.4488 24 8 6.3965 5.5006 0.3519 25 6 5.9852 2.7434 0.5102 26 7 5.7955 1.4449 0.6416 27 1 2.9709 0.8286 0.6090 28 1 2.9712 0.1144 -1.0214 29 1 2.7557 -2.1482 -0.0302 30 1 2.7553 -1.4340 1.6002 31 1 4.7681 -1.4027 -1.5093 32 1 6.3040 -1.2654 -0.6202 33 1 6.7083 -5.5852 -2.4334 34 1 5.6522 1.1625 3.9491 35 1 6.0199 3.6145 3.7695 36 1 6.0775 3.1721 -0.4767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593546706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:01 Heat of formation + Delta-G solvation = 5.950678 kcal Electronic energy + Delta-G solvation = -27199.617198 eV Core-core repulsion = 23008.626224 eV Total energy + Delta-G solvation = -4190.990974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.072 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.74910 -40.85241 -37.50618 -37.17544 -37.07389 -36.00991 -35.83421 -33.82423 -32.81170 -32.76819 -31.10884 -27.75805 -27.60322 -24.89673 -24.05139 -23.64548 -22.04502 -20.02676 -19.69365 -19.23817 -18.28512 -18.07027 -17.63926 -17.45719 -16.97687 -16.76010 -16.04685 -15.62645 -15.13318 -14.86206 -14.73759 -14.50000 -14.12325 -13.98448 -13.83141 -12.91172 -12.72244 -12.55377 -12.34564 -12.12259 -12.10401 -12.08057 -11.86734 -11.83056 -11.75741 -11.60315 -11.55526 -11.22389 -11.14945 -10.79936 -10.65424 -10.55074 -10.50449 -10.34409 -9.69609 -8.70114 -8.54693 -6.19170 -4.20651 -1.06769 0.14970 0.21508 0.59290 0.75103 2.46018 2.58785 2.72809 2.84099 3.21051 3.25605 3.29944 3.41657 3.59556 3.61163 3.75594 3.95749 4.02724 4.28852 4.52435 4.59494 4.65789 4.82133 4.89757 4.96948 5.11427 5.24401 5.28906 5.40081 5.77672 5.92399 6.09555 6.56659 6.61535 6.77218 6.98472 7.09786 7.41967 7.49275 8.33894 8.84254 9.38595 10.93744 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004243 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.007543 B = 6597.232370 C = 7280.953252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.216 3.784 3 C -0.052 4.052 4 C 0.123 3.877 5 N -0.951 5.951 6 C 0.225 3.775 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.890 5.890 11 Si 0.867 3.133 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.261 1.261 15 S 2.682 3.318 16 O -0.907 6.907 17 O -0.946 6.946 18 C -0.393 4.393 19 C -0.089 4.089 20 C -0.018 4.018 21 C -0.064 4.064 22 N 0.027 4.973 23 O -0.149 6.149 24 O -0.140 6.140 25 C 0.157 3.843 26 N -0.378 5.378 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 16.422 6.862 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.005 4.005 5 N -0.790 5.790 6 C 0.103 3.897 7 C -0.579 4.579 8 H 0.099 0.901 9 C -0.126 4.126 10 N -0.528 5.528 11 Si 0.694 3.306 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.186 1.186 15 S 2.761 3.239 16 O -0.896 6.896 17 O -0.936 6.936 18 C -0.606 4.606 19 C -0.110 4.110 20 C -0.046 4.046 21 C -0.149 4.149 22 N 0.549 4.451 23 O -0.366 6.366 24 O -0.359 6.359 25 C -0.005 4.005 26 N -0.088 5.088 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.436 14.548 6.768 16.229 hybrid contribution 1.111 2.190 -0.409 2.490 sum -1.325 16.738 6.360 17.955 Atomic orbital electron populations 1.81217 1.12912 1.08407 1.09023 1.28939 0.94956 0.93304 0.93047 1.19869 0.81855 1.01409 1.06257 1.21256 0.79615 0.96081 1.03557 1.57027 1.13321 1.77292 1.31403 1.19663 0.91421 0.96956 0.81666 1.21315 1.37672 0.89539 1.09353 0.90081 1.24820 0.95178 0.94783 0.97803 1.69875 1.42038 1.08448 1.32438 0.86995 0.80587 0.80843 0.82191 1.19768 1.20964 1.18551 1.03245 0.74764 0.72360 0.73552 1.93715 1.39648 1.70635 1.85643 1.93610 1.65962 1.83346 1.50640 1.35406 1.01978 1.29650 0.93583 1.22067 0.95471 0.92930 1.00571 1.21687 0.90280 0.95741 0.96862 1.22597 1.11861 0.82146 0.98309 1.43459 0.98119 1.02703 1.00832 1.94573 1.53355 1.58389 1.30236 1.94589 1.52598 1.76819 1.11880 1.23309 0.89444 0.88694 0.99003 1.68402 1.07212 1.09626 1.23565 0.88824 0.85977 0.87057 0.88655 0.93896 0.94205 0.92342 0.80758 0.80737 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.42 18.54 42.15 0.78 -5.64 16 2 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 3 C -0.05 -0.51 6.02 -29.52 -0.18 -0.69 16 4 C 0.12 1.54 5.63 -4.05 -0.02 1.52 16 5 N -0.95 -14.89 2.71 -115.67 -0.31 -15.20 16 6 C 0.23 4.35 4.17 -5.20 -0.02 4.33 16 7 C -0.54 -13.46 9.94 -34.44 -0.34 -13.80 16 8 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 9 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 11 Si 0.87 19.21 27.47 -169.99 -4.67 14.54 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.26 -5.19 6.54 56.52 0.37 -4.82 16 15 S 2.68 40.58 5.61 -107.50 -0.60 39.98 16 16 O -0.91 -17.59 16.99 -57.17 -0.97 -18.56 16 17 O -0.95 -14.27 16.20 -57.17 -0.93 -15.19 16 18 C -0.39 -4.55 6.77 -17.55 -0.12 -4.67 16 19 C -0.09 -0.78 9.57 -39.44 -0.38 -1.15 16 20 C -0.02 -0.14 9.67 -39.28 -0.38 -0.52 16 21 C -0.06 -0.60 6.87 -79.80 -0.55 -1.14 16 22 N 0.03 0.28 4.45 34.03 0.15 0.43 16 23 O -0.15 -1.63 18.53 -29.46 -0.55 -2.18 16 24 O -0.14 -1.56 18.48 -29.46 -0.54 -2.11 16 25 C 0.16 1.47 10.72 -17.55 -0.19 1.28 16 26 N -0.38 -4.29 10.24 -12.45 -0.13 -4.41 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 30 H 0.10 1.11 6.92 -51.93 -0.36 0.75 16 31 H 0.04 0.76 7.17 -51.93 -0.37 0.39 16 32 H 0.04 0.78 7.04 -51.92 -0.37 0.42 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.18 1.06 7.94 -52.48 -0.42 0.64 16 35 H 0.18 0.86 7.70 -52.49 -0.40 0.45 16 36 H 0.20 1.38 7.62 -52.49 -0.40 0.98 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -33.09 349.33 -7.50 -40.59 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.17 Total: -2.20 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.60 Total: -10.62 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 1.27 Total: -49.52 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.99 Total: -38.04 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.54 kcal Atomic # 16 Polarization: 40.58 SS G_CDS: -0.60 Total: 39.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.09 -7.50 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593546706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.541 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds