Wall clock time and date at job start Sat Apr 11 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 120.00058 * 2 1 4 4 C 1.50695 * 109.47198 * 275.00029 * 3 2 1 5 5 H 1.08005 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00144 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99807 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99917 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47240 * 90.00410 * 8 6 4 10 10 H 1.48506 * 109.46998 * 210.00095 * 8 6 4 11 11 H 1.48498 * 109.46964 * 329.99939 * 8 6 4 12 12 S 1.65594 * 119.99722 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40146 * 156.45934 * 12 2 1 14 14 O 1.42101 * 106.40518 * 23.54295 * 12 2 1 15 15 N 1.65599 * 107.22287 * 270.00051 * 12 2 1 16 16 C 1.46503 * 120.00064 * 64.99770 * 15 12 2 17 17 C 1.50693 * 109.47415 * 165.00490 * 16 15 12 18 18 C 1.37508 * 119.91090 * 260.48207 * 17 16 15 19 19 C 1.38811 * 120.18627 * 180.02562 * 18 17 16 20 20 C 1.36130 * 120.59425 * 359.74544 * 19 18 17 21 21 C 1.41132 * 120.45565 * 359.97438 * 20 19 18 22 22 C 1.45393 * 129.34986 * 179.97438 * 21 20 19 23 23 C 1.31823 * 114.89304 * 180.02562 * 22 21 20 24 24 S 1.75298 * 111.41126 * 0.02562 * 23 22 21 25 25 C 1.39775 * 118.82752 * 0.02562 * 21 20 19 26 26 H 1.09004 * 109.46821 * 270.00360 * 1 2 3 27 27 H 1.09002 * 109.46830 * 29.99728 * 1 2 3 28 28 H 1.08995 * 109.46798 * 150.00167 * 1 2 3 29 29 H 1.09002 * 109.47530 * 35.00169 * 3 2 1 30 30 H 1.08996 * 109.47361 * 155.00009 * 3 2 1 31 31 H 0.97009 * 119.99698 * 180.02562 * 7 6 4 32 32 H 0.97003 * 120.00360 * 245.00780 * 15 12 2 33 33 H 1.09006 * 109.46691 * 45.00213 * 16 15 12 34 34 H 1.08999 * 109.47078 * 285.00473 * 16 15 12 35 35 H 1.08002 * 119.91059 * 359.74479 * 18 17 16 36 36 H 1.08004 * 119.70233 * 179.76755 * 19 18 17 37 37 H 1.07992 * 119.76835 * 180.02562 * 20 19 18 38 38 H 1.07993 * 122.54965 * 0.02762 * 22 21 20 39 39 H 1.07999 * 124.28832 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0008 2.9503 -1.6664 7 7 3.1259 3.3842 -2.9016 8 14 3.7149 3.9397 -0.2520 9 1 5.1118 3.5041 0.0011 10 1 3.7020 5.3830 -0.6014 11 1 2.8985 3.7185 0.9685 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1570 -0.5440 14 8 1.4114 -2.4067 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 1.3947 -2.1768 2.4412 17 6 1.8801 -2.8727 3.6865 18 6 1.8021 -4.2423 3.7813 19 6 2.2471 -4.8892 4.9260 20 6 2.7693 -4.1799 5.9640 21 6 2.8671 -2.7738 5.8921 22 6 3.3851 -1.8344 6.8735 23 6 3.3402 -0.5687 6.5077 24 16 2.6509 -0.3896 4.9059 25 6 2.4183 -2.1251 4.7383 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6503 2.0043 0.5895 30 1 3.1858 1.1177 0.4343 31 1 3.5901 4.2175 -3.0783 32 1 3.4388 -1.8952 1.9408 33 1 0.7079 -2.8308 1.9036 34 1 0.8794 -1.2566 2.7166 35 1 1.3893 -4.8160 2.9647 36 1 2.1787 -5.9649 4.9937 37 1 3.1119 -4.6968 6.8481 38 1 3.7768 -2.1496 7.8293 39 1 3.6837 0.2535 7.1179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593617375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:05 Heat of formation + Delta-G solvation = -23.382837 kcal Electronic energy + Delta-G solvation = -24967.892256 eV Core-core repulsion = 21321.922500 eV Total energy + Delta-G solvation = -3645.969756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97044 -36.74337 -36.19288 -35.63220 -35.23148 -34.71814 -32.37431 -31.15654 -29.60270 -28.39084 -25.96924 -25.15063 -23.93385 -22.07386 -21.89272 -20.74511 -19.03026 -18.15966 -17.34180 -16.97139 -16.65124 -16.22064 -16.13782 -15.38499 -15.33038 -14.92710 -14.38808 -14.21490 -13.99229 -13.68954 -13.39379 -13.19691 -13.01423 -12.66988 -12.51233 -12.35275 -12.03860 -11.87820 -11.75428 -11.52278 -11.51011 -11.34357 -11.23253 -11.22424 -10.75132 -10.67442 -10.45269 -10.24675 -9.85774 -9.56259 -9.43961 -8.79610 -8.58448 -8.14145 -7.94352 -6.07382 -4.06695 0.45371 0.84391 1.19759 1.32989 1.81361 2.01360 3.27253 3.31128 3.33675 3.35938 3.57120 4.06941 4.28325 4.33620 4.39250 4.57648 4.84342 4.94988 4.96893 5.04780 5.14688 5.22136 5.24339 5.47146 5.51431 5.54681 5.65318 5.73408 5.83706 5.91921 6.08193 6.14962 6.19918 6.21960 6.45345 6.55858 6.72656 6.97964 7.12103 7.40656 7.58780 8.49662 8.97412 9.51646 11.06165 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.004004 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.960441 B = 6990.688166 C = 8394.920607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.990 5.990 3 C 0.228 3.772 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.264 1.264 12 S 2.782 3.218 13 O -0.959 6.959 14 O -0.992 6.992 15 N -1.131 6.131 16 C 0.158 3.842 17 C -0.059 4.059 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.076 4.076 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.196 4.196 24 S 0.107 5.893 25 C -0.129 4.129 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 -13.245 22.270 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.832 5.832 3 C 0.104 3.896 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.789 3.211 13 O -0.942 6.942 14 O -0.975 6.975 15 N -0.889 5.889 16 C 0.032 3.968 17 C -0.065 4.065 18 C -0.107 4.107 19 C -0.140 4.140 20 C -0.096 4.096 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.330 4.330 24 S 0.372 5.628 25 C -0.245 4.245 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.466 -12.218 20.435 24.060 hybrid contribution 1.070 -0.232 2.109 2.376 sum -2.396 -12.450 22.545 25.865 Atomic orbital electron populations 1.21424 0.79697 1.04066 1.00219 1.57365 1.14477 1.22544 1.88784 1.19433 0.90864 0.80676 0.98581 1.21385 1.36829 1.07054 0.91872 0.90411 1.24868 0.95366 0.97190 0.95524 1.69902 1.42539 1.22027 1.18861 0.86933 0.80467 0.79710 0.83113 1.19776 1.20970 1.18870 1.01989 0.73460 0.72964 0.72656 1.93659 1.40550 1.84753 1.75281 1.93530 1.67550 1.59843 1.76597 1.56365 1.14341 1.86207 1.32027 1.20132 0.88386 0.99441 0.88861 1.19228 1.00165 0.93373 0.93729 1.21085 0.98583 0.92878 0.98167 1.20714 0.99491 1.00254 0.93505 1.20712 0.98466 0.91402 0.99041 1.19321 1.01914 0.94333 0.93310 1.20904 1.02634 0.91628 1.00059 1.25188 1.06578 1.00769 1.00445 1.84721 1.64181 1.01059 1.12884 1.22680 1.05708 0.97781 0.98293 0.94237 0.90029 0.91203 0.94833 0.95277 0.92533 0.75337 0.89035 0.91010 0.84692 0.85241 0.85615 0.83861 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 10.68 59.85 0.64 2.15 16 2 N -0.99 -19.78 3.23 -123.05 -0.40 -20.18 16 3 C 0.23 5.34 4.15 -5.20 -0.02 5.32 16 4 C -0.53 -15.21 9.94 -34.44 -0.34 -15.56 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 8 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 12 S 2.78 53.79 6.10 -107.50 -0.66 53.13 16 13 O -0.96 -22.67 17.11 -57.17 -0.98 -23.65 16 14 O -0.99 -20.07 16.21 -57.17 -0.93 -20.99 16 15 N -1.13 -16.43 6.05 -11.66 -0.07 -16.50 16 16 C 0.16 1.91 6.16 -5.20 -0.03 1.88 16 17 C -0.06 -0.66 5.30 -104.30 -0.55 -1.21 16 18 C -0.09 -0.81 9.64 -39.64 -0.38 -1.20 16 19 C -0.12 -0.97 9.95 -40.13 -0.40 -1.37 16 20 C -0.08 -0.65 10.05 -39.24 -0.39 -1.04 16 21 C -0.08 -0.83 6.04 -105.38 -0.64 -1.46 16 22 C -0.12 -1.08 10.39 -38.63 -0.40 -1.48 16 23 C -0.20 -1.79 11.02 28.84 0.32 -1.48 16 24 S 0.11 1.22 22.81 -107.50 -2.45 -1.23 16 25 C -0.13 -1.48 6.31 -38.42 -0.24 -1.73 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 28 H 0.07 1.09 7.02 -51.93 -0.36 0.73 16 29 H 0.03 0.75 7.17 -51.93 -0.37 0.37 16 30 H 0.03 0.69 7.04 -51.93 -0.37 0.32 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.41 5.60 8.64 -34.47 -0.30 5.30 16 33 H 0.09 1.02 7.60 -51.93 -0.39 0.63 16 34 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 35 H 0.14 1.08 8.03 -52.49 -0.42 0.66 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -35.85 357.07 -11.29 -47.14 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.75 Total: 2.45 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.55 Total: -15.14 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.31 Total: -63.53 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.91 Total: -44.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -3.11 Total: 51.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.85 -11.29 -47.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593617375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.758 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds