Wall clock time and date at job start Sat Apr 11 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 120.00058 * 2 1 4 4 C 1.50695 * 109.47198 * 275.00029 * 3 2 1 5 5 H 1.08005 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00144 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99807 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99917 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47240 * 90.00410 * 8 6 4 10 10 H 1.48506 * 109.46998 * 210.00095 * 8 6 4 11 11 H 1.48498 * 109.46964 * 329.99939 * 8 6 4 12 12 S 1.65594 * 119.99722 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40146 * 156.45934 * 12 2 1 14 14 O 1.42101 * 106.40518 * 23.54295 * 12 2 1 15 15 N 1.65599 * 107.22287 * 270.00051 * 12 2 1 16 16 C 1.46503 * 120.00064 * 64.99770 * 15 12 2 17 17 C 1.50693 * 109.47415 * 165.00490 * 16 15 12 18 18 C 1.37508 * 119.91090 * 260.48207 * 17 16 15 19 19 C 1.38811 * 120.18627 * 180.02562 * 18 17 16 20 20 C 1.36130 * 120.59425 * 359.74544 * 19 18 17 21 21 C 1.41132 * 120.45565 * 359.97438 * 20 19 18 22 22 C 1.45393 * 129.34986 * 179.97438 * 21 20 19 23 23 C 1.31823 * 114.89304 * 180.02562 * 22 21 20 24 24 S 1.75298 * 111.41126 * 0.02562 * 23 22 21 25 25 C 1.39775 * 118.82752 * 0.02562 * 21 20 19 26 26 H 1.09004 * 109.46821 * 270.00360 * 1 2 3 27 27 H 1.09002 * 109.46830 * 29.99728 * 1 2 3 28 28 H 1.08995 * 109.46798 * 150.00167 * 1 2 3 29 29 H 1.09002 * 109.47530 * 35.00169 * 3 2 1 30 30 H 1.08996 * 109.47361 * 155.00009 * 3 2 1 31 31 H 0.97009 * 119.99698 * 180.02562 * 7 6 4 32 32 H 0.97003 * 120.00360 * 245.00780 * 15 12 2 33 33 H 1.09006 * 109.46691 * 45.00213 * 16 15 12 34 34 H 1.08999 * 109.47078 * 285.00473 * 16 15 12 35 35 H 1.08002 * 119.91059 * 359.74479 * 18 17 16 36 36 H 1.08004 * 119.70233 * 179.76755 * 19 18 17 37 37 H 1.07992 * 119.76835 * 180.02562 * 20 19 18 38 38 H 1.07993 * 122.54965 * 0.02762 * 22 21 20 39 39 H 1.07999 * 124.28832 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0008 2.9503 -1.6664 7 7 3.1259 3.3842 -2.9016 8 14 3.7149 3.9397 -0.2520 9 1 5.1118 3.5041 0.0011 10 1 3.7020 5.3830 -0.6014 11 1 2.8985 3.7185 0.9685 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1570 -0.5440 14 8 1.4114 -2.4067 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 1.3947 -2.1768 2.4412 17 6 1.8801 -2.8727 3.6865 18 6 1.8021 -4.2423 3.7813 19 6 2.2471 -4.8892 4.9260 20 6 2.7693 -4.1799 5.9640 21 6 2.8671 -2.7738 5.8921 22 6 3.3851 -1.8344 6.8735 23 6 3.3402 -0.5687 6.5077 24 16 2.6509 -0.3896 4.9059 25 6 2.4183 -2.1251 4.7383 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6503 2.0043 0.5895 30 1 3.1858 1.1177 0.4343 31 1 3.5901 4.2175 -3.0783 32 1 3.4388 -1.8952 1.9408 33 1 0.7079 -2.8308 1.9036 34 1 0.8794 -1.2566 2.7166 35 1 1.3893 -4.8160 2.9647 36 1 2.1787 -5.9649 4.9937 37 1 3.1119 -4.6968 6.8481 38 1 3.7768 -2.1496 7.8293 39 1 3.6837 0.2535 7.1179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593617375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:04 Heat of formation + Delta-G solvation = -49.476559 kcal Electronic energy + Delta-G solvation = -24969.023765 eV Core-core repulsion = 21321.922500 eV Total energy + Delta-G solvation = -3647.101265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67312 -38.36508 -37.33710 -37.06556 -36.90631 -35.54874 -34.50930 -32.00527 -30.28423 -30.27827 -26.97845 -26.68799 -24.61573 -23.85187 -22.78317 -21.44591 -20.45881 -19.21363 -18.95868 -18.68909 -18.18095 -17.49598 -16.96148 -16.62700 -16.17136 -16.05146 -15.82545 -15.33986 -15.11645 -14.78097 -14.61580 -14.48826 -14.26454 -14.10204 -13.88531 -13.43053 -13.33953 -13.19549 -13.16313 -13.14087 -13.00169 -12.66197 -12.37998 -12.27151 -12.19863 -12.09260 -11.97214 -11.71021 -11.50745 -10.78922 -10.68548 -10.52050 -9.79802 -9.49871 -8.71301 -8.29375 -6.35132 -0.47702 -0.19079 0.23874 0.59104 1.10221 1.33425 1.36487 1.40326 1.48636 2.01279 2.35061 2.56149 2.78680 3.04538 3.35154 3.55719 3.69139 3.88148 4.00077 4.20697 4.25309 4.30800 4.45919 4.49587 4.66029 4.69567 4.73369 4.78365 4.86813 4.89839 5.01370 5.06671 5.08764 5.33361 5.41906 5.47124 5.47677 5.53215 5.67775 5.91730 5.98282 6.30281 6.67839 7.27812 8.88174 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.004004 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.960441 B = 6990.688166 C = 8394.920607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.998 5.998 3 C 0.236 3.764 4 C -0.544 4.544 5 H 0.029 0.971 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.228 1.228 12 S 2.798 3.202 13 O -1.009 7.009 14 O -1.004 7.004 15 N -1.114 6.114 16 C 0.154 3.846 17 C -0.077 4.077 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.196 4.196 24 S 0.054 5.946 25 C -0.142 4.142 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.419 0.581 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -14.330 26.320 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.840 5.840 3 C 0.111 3.889 4 C -0.583 4.583 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.763 3.237 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.151 1.151 12 S 2.806 3.194 13 O -0.993 6.993 14 O -0.988 6.988 15 N -0.876 5.876 16 C 0.028 3.972 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.105 4.105 22 C -0.150 4.150 23 C -0.329 4.329 24 S 0.317 5.683 25 C -0.258 4.258 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.558 -13.332 24.496 28.116 hybrid contribution 1.027 -0.076 0.861 1.342 sum -2.531 -13.409 25.357 28.795 Atomic orbital electron populations 1.21666 0.77707 1.03797 1.02878 1.57296 1.15903 1.21419 1.89336 1.19193 0.91875 0.82427 0.95388 1.21719 1.36345 1.06845 0.93418 0.95301 1.25922 0.95761 0.98610 0.98710 1.70075 1.44058 1.22936 1.21744 0.85816 0.79859 0.77709 0.80307 1.19510 1.20326 1.15102 1.01235 0.72133 0.72629 0.73376 1.93586 1.42973 1.85401 1.77320 1.93504 1.67613 1.60014 1.77642 1.55889 1.15604 1.85533 1.30590 1.20341 0.87480 1.00247 0.89105 1.19182 1.01817 0.94055 0.93315 1.21378 0.98029 0.92378 0.99173 1.21080 0.98406 1.01772 0.92673 1.21110 0.97367 0.90768 1.00068 1.19723 1.02088 0.95456 0.93279 1.21235 1.01763 0.91204 1.00774 1.25408 1.06579 1.01786 0.99109 1.84778 1.65621 1.02305 1.15569 1.22789 1.06507 0.97406 0.99101 0.90016 0.91099 0.90775 0.92554 0.94968 0.92338 0.74581 0.88154 0.90381 0.83468 0.82325 0.82768 0.80995 0.79358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.70 10.68 127.77 1.36 4.06 16 2 N -1.00 -39.70 3.23 -543.22 -1.75 -41.45 16 3 C 0.24 10.96 4.15 85.63 0.36 11.32 16 4 C -0.54 -32.03 9.94 25.60 0.25 -31.78 16 5 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 6 C 0.01 0.46 5.47 84.66 0.46 0.92 16 7 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 8 Si 0.94 43.25 27.47 68.60 1.88 45.13 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 12 S 2.80 108.69 6.10 -56.49 -0.34 108.35 16 13 O -1.01 -49.02 17.11 -128.00 -2.19 -51.21 16 14 O -1.00 -40.62 16.21 -128.00 -2.08 -42.69 16 15 N -1.11 -31.49 6.05 -190.79 -1.15 -32.65 16 16 C 0.15 3.50 6.16 85.63 0.53 4.02 16 17 C -0.08 -1.60 5.30 -19.66 -0.10 -1.71 16 18 C -0.09 -1.46 9.64 22.23 0.21 -1.25 16 19 C -0.12 -1.53 9.95 21.92 0.22 -1.32 16 20 C -0.07 -0.99 10.05 22.49 0.23 -0.76 16 21 C -0.10 -1.75 6.04 -20.36 -0.12 -1.87 16 22 C -0.12 -1.79 10.39 23.33 0.24 -1.54 16 23 C -0.20 -3.15 11.02 67.04 0.74 -2.42 16 24 S 0.05 1.16 22.81 -56.49 -1.29 -0.13 16 25 C -0.14 -3.05 6.31 23.02 0.15 -2.91 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 28 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 29 H 0.06 2.38 7.17 -2.39 -0.02 2.36 16 30 H 0.03 1.49 7.04 -2.39 -0.02 1.47 16 31 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 32 H 0.42 11.15 8.64 -96.74 -0.84 10.31 16 33 H 0.10 2.08 7.60 -2.38 -0.02 2.06 16 34 H 0.08 1.68 7.99 -2.39 -0.02 1.66 16 35 H 0.15 1.98 8.03 -2.91 -0.02 1.96 16 36 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -81.01 357.07 -1.91 -82.92 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.19 Total: 17.24 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.52 Total: -25.22 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -2.61 Total: -134.39 kcal Atomic # 8 Polarization: -89.64 SS G_CDS: -4.27 Total: -93.90 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 109.86 SS G_CDS: -1.63 Total: 108.22 kcal Total: -81.01 -1.91 -82.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593617375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.445 kcal (2) G-P(sol) polarization free energy of solvation -81.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds