Wall clock time and date at job start Sat Apr 11 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09005 * 109.47368 * 185.60512 * 3 2 1 5 5 C 1.50706 * 109.46952 * 305.60505 * 3 2 1 6 6 H 1.07997 * 119.99932 * 116.75877 * 5 3 2 7 7 C 1.37871 * 119.99816 * 296.75034 * 5 3 2 8 8 N 1.31516 * 120.00240 * 352.24659 * 7 5 3 9 9 Si 1.86803 * 119.99762 * 172.24177 * 7 5 3 10 10 H 1.48497 * 109.47168 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46912 * 300.00173 * 9 7 5 12 12 H 1.48495 * 109.47300 * 60.00260 * 9 7 5 13 13 N 1.46901 * 109.47185 * 65.60610 * 3 2 1 14 14 C 1.46896 * 111.00150 * 87.01396 * 13 3 2 15 15 H 1.08999 * 109.47065 * 327.11256 * 14 13 3 16 16 C 1.50700 * 109.47251 * 87.11085 * 14 13 3 17 17 N 1.34778 * 119.99898 * 179.97438 * 16 14 13 18 18 O 1.21280 * 119.99962 * 359.97438 * 16 14 13 19 19 C 1.50700 * 109.47050 * 207.11507 * 14 13 3 20 20 C 1.38242 * 119.98832 * 319.72120 * 19 14 13 21 21 C 1.38219 * 120.01070 * 179.76801 * 20 19 14 22 22 C 1.38324 * 119.98569 * 0.51190 * 21 20 19 23 23 Br 1.89105 * 120.00784 * 179.76524 * 22 21 20 24 24 C 1.38321 * 119.98238 * 359.74168 * 22 21 20 25 25 C 1.38221 * 119.99172 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46572 * 183.31830 * 1 2 3 27 27 H 1.09004 * 109.47283 * 303.31777 * 1 2 3 28 28 H 1.09002 * 109.46823 * 63.31963 * 1 2 3 29 29 H 1.09002 * 109.47279 * 239.99872 * 2 1 3 30 30 H 1.08999 * 109.47357 * 119.99957 * 2 1 3 31 31 H 0.96996 * 120.00051 * 355.82801 * 8 7 5 32 32 H 1.00904 * 110.99803 * 323.05575 * 13 3 2 33 33 H 0.97000 * 119.99549 * 0.02562 * 17 16 14 34 34 H 0.96993 * 120.00029 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.99551 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.00754 * 180.22675 * 21 20 19 37 37 H 1.08003 * 120.00949 * 179.97438 * 24 22 21 38 38 H 1.07997 * 119.99633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4442 -0.1004 5 6 1.4275 2.1918 -1.1553 6 1 0.7772 3.0337 -0.9688 7 6 1.6974 1.8026 -2.4500 8 7 2.6046 0.8795 -2.6837 9 14 0.7745 2.5864 -3.8725 10 1 1.2454 1.9982 -5.1522 11 1 -0.6806 2.3335 -3.7178 12 1 1.0247 4.0501 -3.8784 13 7 1.6639 2.0948 1.2614 14 6 2.6733 1.8527 2.3007 15 1 3.1149 0.8667 2.1556 16 6 3.7498 2.9034 2.2101 17 7 4.7868 2.8817 3.0706 18 8 3.6829 3.7685 1.3627 19 6 2.0219 1.9165 3.6582 20 6 1.0645 2.8785 3.9205 21 6 0.4633 2.9345 5.1639 22 6 0.8275 2.0344 6.1490 23 35 0.0101 2.1146 7.8524 24 6 1.7894 1.0754 5.8877 25 6 2.3866 1.0171 4.6425 26 1 -0.3632 -1.0260 0.0595 27 1 -0.3634 0.5645 0.8588 28 1 -0.3633 0.4614 -0.9183 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1264 0.5159 -1.9513 32 1 0.7508 1.7926 1.5665 33 1 4.8404 2.1895 3.7481 34 1 5.4795 3.5582 3.0126 35 1 0.7831 3.5839 3.1525 36 1 -0.2874 3.6837 5.3676 37 1 2.0744 0.3726 6.6567 38 1 3.1373 0.2680 4.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:10 Heat of formation + Delta-G solvation = -11.437177 kcal Electronic energy + Delta-G solvation = -21858.161559 eV Core-core repulsion = 18553.485542 eV Total energy + Delta-G solvation = -3304.676017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13707 -38.55245 -36.53900 -33.92947 -33.09358 -31.93306 -31.22744 -30.80009 -29.16965 -26.44489 -24.79081 -23.64490 -22.87532 -21.97404 -20.16280 -19.34721 -17.43754 -17.05634 -16.70809 -16.18736 -15.51650 -15.17218 -14.44474 -14.23590 -13.97859 -13.67143 -13.62282 -13.44229 -13.25328 -12.86029 -12.79526 -12.22799 -11.87816 -11.39768 -11.19144 -11.13913 -10.94713 -10.70932 -10.49782 -10.34361 -10.11698 -10.01242 -9.91013 -9.60074 -9.35027 -9.19084 -8.75598 -8.54411 -8.19415 -7.44758 -6.23107 -3.89863 0.85949 1.14134 1.41443 3.06822 3.40822 3.50912 3.54081 3.71336 3.78957 4.54073 4.61953 4.65578 4.73279 4.98634 5.18880 5.28910 5.37302 5.45506 5.49027 5.57370 5.82906 5.97308 6.04682 6.09170 6.10272 6.29709 6.38876 6.62524 6.64323 6.90095 6.96303 7.07202 7.22512 7.28828 7.57372 7.86279 8.24234 8.36872 8.70123 8.72605 8.98793 9.75695 11.12800 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.003045 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.747795 B = 9192.552003 C = 9754.597187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C 0.210 3.790 4 H 0.024 0.976 5 C -0.558 4.558 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.648 5.648 14 C 0.106 3.894 15 H 0.071 0.929 16 C 0.519 3.481 17 N -0.866 5.866 18 O -0.495 6.495 19 C -0.066 4.066 20 C -0.087 4.087 21 C -0.090 4.090 22 C -0.091 4.091 23 Br -0.059 7.059 24 C -0.092 4.092 25 C -0.111 4.111 26 H 0.026 0.974 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.266 0.734 32 H 0.337 0.663 33 H 0.393 0.607 34 H 0.397 0.603 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -0.913 23.077 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.102 3.898 4 H 0.042 0.958 5 C -0.597 4.597 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.281 5.281 14 C -0.008 4.008 15 H 0.089 0.911 16 C 0.301 3.699 17 N -0.432 5.432 18 O -0.365 6.365 19 C -0.067 4.067 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.171 4.171 23 Br 0.026 6.974 24 C -0.112 4.112 25 C -0.130 4.130 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.220 0.780 34 H 0.227 0.773 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.053 0.196 21.206 21.306 hybrid contribution 0.629 -1.091 1.928 2.302 sum -1.424 -0.895 23.134 23.195 Atomic orbital electron populations 1.21538 0.96544 0.98302 1.02054 1.22258 0.96405 1.01122 0.99479 1.19362 0.95584 0.88281 0.86590 0.95803 1.21734 1.31059 1.16185 0.90748 0.92541 1.25666 0.97076 0.96176 0.99636 1.70813 1.21174 1.27743 1.35780 0.83611 0.75503 0.75731 0.75846 1.21097 1.21583 1.21526 1.60572 1.02292 1.63106 1.02092 1.20378 0.94124 0.96641 0.89657 0.91147 1.20554 0.82258 0.86371 0.80711 1.43899 1.27191 1.34768 1.37340 1.90801 1.75845 1.36094 1.33769 1.20003 0.96583 0.95442 0.94689 1.21264 0.94921 0.98019 0.96411 1.21161 0.99572 0.97901 0.92324 1.21792 1.01502 1.01378 0.92388 1.96699 1.80761 1.98550 1.21384 1.21014 0.95401 0.97373 0.97375 1.21079 1.00448 0.99061 0.92411 0.95480 0.94656 0.91055 0.91071 0.96369 0.92299 0.84194 0.77964 0.77289 0.83632 0.84889 0.85012 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.38 37.16 0.35 -2.22 16 2 C -0.15 -3.36 5.44 -26.73 -0.15 -3.50 16 3 C 0.21 5.06 1.67 -68.86 -0.11 4.95 16 4 H 0.02 0.66 7.11 -51.93 -0.37 0.29 16 5 C -0.56 -15.43 7.33 -34.44 -0.25 -15.68 16 6 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 7 C 0.02 0.49 5.24 -17.82 -0.09 0.40 16 8 N -0.92 -27.22 12.90 55.43 0.72 -26.50 16 9 Si 1.06 25.58 29.91 -169.99 -5.08 20.50 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.65 -13.16 4.98 -103.39 -0.51 -13.68 16 14 C 0.11 1.75 2.41 -70.02 -0.17 1.58 16 15 H 0.07 1.13 7.12 -51.93 -0.37 0.76 16 16 C 0.52 9.16 7.26 -10.98 -0.08 9.08 16 17 N -0.87 -10.54 8.77 31.22 0.27 -10.27 16 18 O -0.49 -11.52 17.18 5.56 0.10 -11.42 16 19 C -0.07 -0.86 4.50 -104.62 -0.47 -1.33 16 20 C -0.09 -1.15 8.96 -39.59 -0.35 -1.50 16 21 C -0.09 -1.02 9.79 -39.56 -0.39 -1.41 16 22 C -0.09 -0.98 6.22 -39.52 -0.25 -1.22 16 23 Br -0.06 -0.57 33.70 -68.01 -2.29 -2.86 16 24 C -0.09 -0.91 9.79 -39.56 -0.39 -1.29 16 25 C -0.11 -1.15 9.50 -39.59 -0.38 -1.53 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.65 6.34 -51.93 -0.33 0.32 16 28 H 0.07 1.61 7.19 -51.93 -0.37 1.24 16 29 H 0.07 1.75 6.26 -51.93 -0.33 1.43 16 30 H 0.02 0.35 7.56 -51.93 -0.39 -0.04 16 31 H 0.27 7.85 6.02 -40.82 -0.25 7.60 16 32 H 0.34 6.42 5.70 -39.29 -0.22 6.19 16 33 H 0.39 3.52 8.55 -40.82 -0.35 3.17 16 34 H 0.40 4.35 8.93 -40.82 -0.36 3.99 16 35 H 0.15 2.12 7.73 -52.49 -0.41 1.72 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -32.78 334.89 -9.13 -41.91 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.64 Total: 10.98 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.73 Total: -13.70 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.47 Total: -50.45 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.10 Total: -11.42 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.78 -9.13 -41.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds