Wall clock time and date at job start Sat Apr 11 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09005 * 109.47368 * 185.60512 * 3 2 1 5 5 C 1.50706 * 109.46952 * 305.60505 * 3 2 1 6 6 H 1.07997 * 119.99932 * 116.75877 * 5 3 2 7 7 C 1.37871 * 119.99816 * 296.75034 * 5 3 2 8 8 N 1.31516 * 120.00240 * 352.24659 * 7 5 3 9 9 Si 1.86803 * 119.99762 * 172.24177 * 7 5 3 10 10 H 1.48497 * 109.47168 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46912 * 300.00173 * 9 7 5 12 12 H 1.48495 * 109.47300 * 60.00260 * 9 7 5 13 13 N 1.46901 * 109.47185 * 65.60610 * 3 2 1 14 14 C 1.46896 * 111.00150 * 87.01396 * 13 3 2 15 15 H 1.08999 * 109.47065 * 327.11256 * 14 13 3 16 16 C 1.50700 * 109.47251 * 87.11085 * 14 13 3 17 17 N 1.34778 * 119.99898 * 179.97438 * 16 14 13 18 18 O 1.21280 * 119.99962 * 359.97438 * 16 14 13 19 19 C 1.50700 * 109.47050 * 207.11507 * 14 13 3 20 20 C 1.38242 * 119.98832 * 319.72120 * 19 14 13 21 21 C 1.38219 * 120.01070 * 179.76801 * 20 19 14 22 22 C 1.38324 * 119.98569 * 0.51190 * 21 20 19 23 23 Br 1.89105 * 120.00784 * 179.76524 * 22 21 20 24 24 C 1.38321 * 119.98238 * 359.74168 * 22 21 20 25 25 C 1.38221 * 119.99172 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46572 * 183.31830 * 1 2 3 27 27 H 1.09004 * 109.47283 * 303.31777 * 1 2 3 28 28 H 1.09002 * 109.46823 * 63.31963 * 1 2 3 29 29 H 1.09002 * 109.47279 * 239.99872 * 2 1 3 30 30 H 1.08999 * 109.47357 * 119.99957 * 2 1 3 31 31 H 0.96996 * 120.00051 * 355.82801 * 8 7 5 32 32 H 1.00904 * 110.99803 * 323.05575 * 13 3 2 33 33 H 0.97000 * 119.99549 * 0.02562 * 17 16 14 34 34 H 0.96993 * 120.00029 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.99551 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.00754 * 180.22675 * 21 20 19 37 37 H 1.08003 * 120.00949 * 179.97438 * 24 22 21 38 38 H 1.07997 * 119.99633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4442 -0.1004 5 6 1.4275 2.1918 -1.1553 6 1 0.7772 3.0337 -0.9688 7 6 1.6974 1.8026 -2.4500 8 7 2.6046 0.8795 -2.6837 9 14 0.7745 2.5864 -3.8725 10 1 1.2454 1.9982 -5.1522 11 1 -0.6806 2.3335 -3.7178 12 1 1.0247 4.0501 -3.8784 13 7 1.6639 2.0948 1.2614 14 6 2.6733 1.8527 2.3007 15 1 3.1149 0.8667 2.1556 16 6 3.7498 2.9034 2.2101 17 7 4.7868 2.8817 3.0706 18 8 3.6829 3.7685 1.3627 19 6 2.0219 1.9165 3.6582 20 6 1.0645 2.8785 3.9205 21 6 0.4633 2.9345 5.1639 22 6 0.8275 2.0344 6.1490 23 35 0.0101 2.1146 7.8524 24 6 1.7894 1.0754 5.8877 25 6 2.3866 1.0171 4.6425 26 1 -0.3632 -1.0260 0.0595 27 1 -0.3634 0.5645 0.8588 28 1 -0.3633 0.4614 -0.9183 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1264 0.5159 -1.9513 32 1 0.7508 1.7926 1.5665 33 1 4.8404 2.1895 3.7481 34 1 5.4795 3.5582 3.0126 35 1 0.7831 3.5839 3.1525 36 1 -0.2874 3.6837 5.3676 37 1 2.0744 0.3726 6.6567 38 1 3.1373 0.2680 4.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:10 Heat of formation + Delta-G solvation = -34.910849 kcal Electronic energy + Delta-G solvation = -21859.179454 eV Core-core repulsion = 18553.485542 eV Total energy + Delta-G solvation = -3305.693911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31836 -39.73353 -38.26088 -35.35681 -34.49144 -33.39328 -32.28860 -32.05842 -30.35034 -27.99295 -26.46141 -25.50760 -23.80737 -23.01596 -21.72894 -20.88497 -18.97483 -18.31396 -18.19708 -17.42357 -16.60203 -16.38771 -15.76417 -15.69308 -15.46909 -15.42770 -15.08847 -14.61331 -14.43656 -14.32507 -14.15328 -13.69521 -13.43346 -13.08624 -12.60887 -12.35151 -12.25069 -12.09716 -11.97718 -11.92776 -11.81188 -11.68224 -11.27376 -11.04773 -10.64815 -10.60409 -10.34250 -10.04995 -9.62193 -9.08544 -8.46891 -6.13572 -0.05474 0.28209 0.59639 1.54394 1.62041 1.70540 1.80503 2.42445 2.58282 2.67079 3.28578 3.48533 3.52674 3.82108 3.93082 4.12775 4.17945 4.33750 4.35686 4.37385 4.45618 4.55485 4.63462 4.92395 4.96541 5.08093 5.10527 5.16821 5.22533 5.41688 5.48344 5.57908 5.73577 5.92407 5.97936 6.24452 6.43503 6.59057 6.71848 6.83048 7.45473 7.58491 8.88995 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.003045 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.747795 B = 9192.552003 C = 9754.597187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.143 4.143 3 C 0.219 3.781 4 H -0.014 1.014 5 C -0.565 4.565 6 H 0.038 0.962 7 C -0.029 4.029 8 N -0.940 5.940 9 Si 1.104 2.896 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.110 3.890 15 H 0.080 0.920 16 C 0.515 3.485 17 N -0.837 5.837 18 O -0.564 6.564 19 C -0.076 4.076 20 C -0.101 4.101 21 C -0.091 4.091 22 C -0.094 4.094 23 Br -0.046 7.046 24 C -0.084 4.084 25 C -0.099 4.099 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.255 0.745 32 H 0.343 0.657 33 H 0.413 0.587 34 H 0.406 0.594 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -2.126 25.773 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.183 4.183 3 C 0.110 3.890 4 H 0.004 0.996 5 C -0.604 4.604 6 H 0.057 0.943 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.927 3.073 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.211 1.211 13 N -0.293 5.293 14 C -0.004 4.004 15 H 0.098 0.902 16 C 0.298 3.702 17 N -0.403 5.403 18 O -0.441 6.441 19 C -0.078 4.078 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.173 4.173 23 Br 0.040 6.960 24 C -0.103 4.103 25 C -0.118 4.118 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.237 0.763 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.503 -1.044 23.988 24.141 hybrid contribution 0.809 -0.694 1.286 1.670 sum -1.694 -1.738 25.274 25.391 Atomic orbital electron populations 1.21446 0.95013 0.99957 1.01287 1.22080 0.97648 0.99211 0.99314 1.19039 0.92866 0.89556 0.87563 0.99640 1.22016 1.30334 1.15691 0.92347 0.94348 1.26857 0.97274 0.96200 1.02322 1.70915 1.22372 1.29215 1.35360 0.83095 0.75735 0.75120 0.73304 1.21165 1.19318 1.21053 1.60278 1.03623 1.63238 1.02119 1.20328 0.93173 0.96410 0.90455 0.90198 1.20888 0.83225 0.85753 0.80302 1.43590 1.25575 1.35015 1.36137 1.90771 1.77570 1.38890 1.36854 1.19726 0.97431 0.97058 0.93551 1.21102 0.95972 0.98175 0.96786 1.21211 0.99658 0.98460 0.91785 1.21989 1.01492 1.01118 0.92736 1.96727 1.80616 1.98523 1.20178 1.21331 0.94291 0.97097 0.97605 1.21298 1.00443 0.98379 0.91657 0.92848 0.92938 0.93974 0.94104 0.93469 0.93424 0.83473 0.75577 0.76256 0.86055 0.83973 0.82259 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 9.38 71.98 0.68 -4.05 16 2 C -0.14 -6.26 5.44 30.59 0.17 -6.09 16 3 C 0.22 10.85 1.67 44.17 0.07 10.92 16 4 H -0.01 -0.81 7.11 -2.38 -0.02 -0.83 16 5 C -0.57 -32.29 7.33 25.60 0.19 -32.10 16 6 H 0.04 2.28 7.83 -2.91 -0.02 2.26 16 7 C -0.03 -1.69 5.24 84.65 0.44 -1.24 16 8 N -0.94 -57.46 12.90 21.45 0.28 -57.19 16 9 Si 1.10 52.47 29.91 68.60 2.05 54.53 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.66 -27.26 4.98 -481.03 -2.40 -29.66 16 14 C 0.11 3.57 2.41 43.42 0.10 3.67 16 15 H 0.08 2.44 7.12 -2.39 -0.02 2.42 16 16 C 0.51 18.32 7.26 87.66 0.64 18.95 16 17 N -0.84 -19.27 8.77 -173.53 -1.52 -20.79 16 18 O -0.56 -27.44 17.18 -3.03 -0.05 -27.49 16 19 C -0.08 -1.87 4.50 -19.86 -0.09 -1.96 16 20 C -0.10 -2.59 8.96 22.27 0.20 -2.39 16 21 C -0.09 -1.93 9.79 22.29 0.22 -1.71 16 22 C -0.09 -1.73 6.22 22.31 0.14 -1.59 16 23 Br -0.05 -0.75 33.70 -20.37 -0.69 -1.44 16 24 C -0.08 -1.31 9.79 22.29 0.22 -1.09 16 25 C -0.10 -1.69 9.50 22.27 0.21 -1.48 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.86 6.34 -2.38 -0.02 1.85 16 28 H 0.04 1.89 7.19 -2.39 -0.02 1.88 16 29 H 0.04 2.04 6.26 -2.39 -0.01 2.02 16 30 H 0.05 1.76 7.56 -2.39 -0.02 1.75 16 31 H 0.26 15.73 6.02 -92.71 -0.56 15.17 16 32 H 0.34 13.08 5.70 -89.69 -0.51 12.57 16 33 H 0.41 6.26 8.55 -92.71 -0.79 5.46 16 34 H 0.41 8.43 8.93 -92.71 -0.83 7.60 16 35 H 0.12 3.68 7.73 -2.91 -0.02 3.65 16 36 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.16 1.83 8.04 -2.91 -0.02 1.81 16 Total: -1.00 -74.96 334.89 0.05 -74.90 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.80 Total: 27.30 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.18 Total: -20.16 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -3.64 Total: -107.64 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.05 Total: 54.53 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -0.69 Total: -1.44 kcal Total: -74.96 0.05 -74.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.993 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds