Wall clock time and date at job start Sat Apr 11 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 H 1.09000 * 109.46769 * 55.41698 * 3 2 1 5 5 C 1.50702 * 109.46929 * 175.41093 * 3 2 1 6 6 H 1.08002 * 119.99288 * 120.00082 * 5 3 2 7 7 C 1.37874 * 120.00214 * 300.00144 * 5 3 2 8 8 N 1.31508 * 119.99974 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99679 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47265 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46844 * 120.00135 * 9 7 5 12 12 H 1.48501 * 109.47070 * 240.00305 * 9 7 5 13 13 N 1.46891 * 109.47417 * 295.41788 * 3 2 1 14 14 C 1.46895 * 111.00458 * 156.68314 * 13 3 2 15 15 H 1.08997 * 109.46803 * 36.00076 * 14 13 3 16 16 C 1.50707 * 109.47137 * 276.00416 * 14 13 3 17 17 N 1.34771 * 120.00194 * 153.19714 * 16 14 13 18 18 O 1.21279 * 119.99519 * 333.20155 * 16 14 13 19 19 C 1.50696 * 109.47781 * 156.00278 * 14 13 3 20 20 C 1.38247 * 119.98807 * 39.72137 * 19 14 13 21 21 C 1.38220 * 120.01181 * 179.77164 * 20 19 14 22 22 C 1.38318 * 119.98665 * 0.50842 * 21 20 19 23 23 Br 1.89098 * 120.01197 * 179.76845 * 22 21 20 24 24 C 1.38335 * 119.98375 * 359.74605 * 22 21 20 25 25 C 1.38217 * 119.98395 * 359.97438 * 24 22 21 26 26 H 1.08997 * 109.47423 * 305.96956 * 1 2 3 27 27 H 1.08997 * 109.47044 * 65.97165 * 1 2 3 28 28 H 1.09003 * 109.46747 * 185.96937 * 1 2 3 29 29 H 1.08998 * 109.47116 * 240.00051 * 2 1 3 30 30 H 1.09006 * 109.46971 * 120.00044 * 2 1 3 31 31 H 0.97001 * 119.99621 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00255 * 32.72292 * 13 3 2 33 33 H 0.96999 * 119.99968 * 0.02562 * 17 16 14 34 34 H 0.96997 * 120.00007 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.99123 * 0.02562 * 20 19 14 36 36 H 1.07991 * 120.00749 * 180.27785 * 21 20 19 37 37 H 1.07999 * 120.00541 * 179.97438 * 24 22 21 38 38 H 1.08006 * 119.99226 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6111 1.9794 0.8461 5 6 3.5427 1.4440 0.1137 6 1 4.1426 1.8905 -0.6655 7 6 4.1515 0.8755 1.2123 8 7 3.4210 0.3314 2.1608 9 14 6.0143 0.8768 1.3527 10 1 6.5999 1.5449 0.1629 11 1 6.4176 1.6095 2.5798 12 1 6.5061 -0.5224 1.4274 13 7 1.6428 2.1023 -1.2508 14 6 1.6038 3.5616 -1.0870 15 1 2.4063 3.8737 -0.4187 16 6 0.2757 3.9660 -0.5005 17 7 0.1762 5.0965 0.2264 18 8 -0.7034 3.2739 -0.6825 19 6 1.7823 4.2229 -2.4293 20 6 1.1707 3.6901 -3.5489 21 6 1.3303 4.2989 -4.7794 22 6 2.1105 5.4354 -4.8925 23 35 2.3346 6.2652 -6.5769 24 6 2.7266 5.9652 -3.7729 25 6 2.5617 5.3590 -2.5418 26 1 -0.3634 0.6036 0.8317 27 1 -0.3633 0.4184 -0.9386 28 1 -0.3633 -1.0221 0.1069 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8494 -0.0689 2.9335 32 1 0.7555 1.7515 -1.5788 33 1 0.9593 5.6502 0.3717 34 1 -0.6785 5.3566 0.6041 35 1 0.5648 2.8004 -3.4611 36 1 0.8488 3.8853 -5.6531 37 1 3.3363 6.8523 -3.8609 38 1 3.0424 5.7727 -1.6676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:13 Heat of formation + Delta-G solvation = -18.191868 kcal Electronic energy + Delta-G solvation = -21829.173894 eV Core-core repulsion = 18524.204972 eV Total energy + Delta-G solvation = -3304.968922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05751 -38.58966 -36.05241 -33.70275 -33.16065 -31.96182 -31.07299 -30.93805 -29.10120 -26.77650 -25.16424 -22.91956 -22.50367 -21.83143 -19.89097 -19.56586 -17.44046 -16.72224 -16.58497 -16.16236 -15.32083 -15.21955 -14.68541 -14.41431 -14.09153 -13.74507 -13.42221 -13.37781 -13.03578 -12.77423 -12.19440 -12.04035 -11.73624 -11.30237 -11.12365 -11.03494 -10.92083 -10.78290 -10.62169 -10.33139 -10.02735 -9.95561 -9.75215 -9.61537 -9.47494 -9.14807 -8.94529 -8.45119 -8.41087 -7.48736 -6.02632 -4.08102 1.12354 1.39489 1.60423 2.90283 3.27043 3.36077 3.40518 3.60245 3.89074 4.39344 4.77207 4.92678 4.94375 5.15529 5.25591 5.30798 5.46375 5.58994 5.70442 5.80723 6.05145 6.22985 6.25908 6.29580 6.30060 6.51485 6.66586 6.86407 6.93040 6.96257 7.05394 7.13028 7.38475 7.51909 7.74463 7.84083 8.11728 8.31238 8.48440 8.61758 9.00272 9.57550 11.02593 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.003443 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.695288 B = 8129.909388 C = 9088.084922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.499 4.499 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.657 5.657 14 C 0.111 3.889 15 H 0.115 0.885 16 C 0.499 3.501 17 N -0.855 5.855 18 O -0.541 6.541 19 C -0.037 4.037 20 C -0.082 4.082 21 C -0.093 4.093 22 C -0.094 4.094 23 Br -0.065 7.065 24 C -0.093 4.093 25 C -0.107 4.107 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.259 0.741 32 H 0.335 0.665 33 H 0.400 0.600 34 H 0.394 0.606 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 13.733 -11.862 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.289 5.289 14 C -0.004 4.004 15 H 0.133 0.867 16 C 0.282 3.718 17 N -0.418 5.418 18 O -0.417 6.417 19 C -0.039 4.039 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.174 4.174 23 Br 0.020 6.980 24 C -0.113 4.113 25 C -0.127 4.127 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.156 0.844 33 H 0.228 0.772 34 H 0.224 0.776 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.413 13.323 -12.803 18.790 hybrid contribution 0.230 0.222 1.399 1.435 sum -3.183 13.545 -11.404 17.990 Atomic orbital electron populations 1.21843 0.99081 0.99379 1.00187 1.21734 0.91578 0.99790 1.03085 1.19234 0.95343 0.90392 0.83850 0.98050 1.21243 0.90908 1.36869 1.04755 0.91807 1.24955 0.98149 0.95470 0.95762 1.69892 1.34757 1.38827 1.09718 0.86509 0.85747 0.77755 0.77810 1.19711 1.21249 1.21081 1.61027 1.34850 0.98682 1.34387 1.20576 0.93947 0.92750 0.93112 0.86708 1.21993 0.92264 0.80106 0.77449 1.43967 1.14934 1.26440 1.56444 1.90685 1.38983 1.52186 1.59881 1.19774 0.95480 0.93838 0.94810 1.21042 0.98707 0.99224 0.91150 1.21072 0.97754 0.94080 0.98409 1.21701 1.04867 0.99495 0.91298 1.96658 1.97064 1.80421 1.23880 1.20979 0.99049 1.00002 0.91297 1.21033 0.98660 0.95554 0.97422 0.93977 0.94140 0.94620 0.93952 0.88257 0.93053 0.84388 0.77188 0.77560 0.84787 0.85244 0.85223 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.61 37.16 0.36 -2.70 16 2 C -0.12 -2.92 5.38 -26.73 -0.14 -3.06 16 3 C 0.22 5.24 1.86 -68.87 -0.13 5.11 16 4 H 0.00 0.05 7.61 -51.93 -0.40 -0.35 16 5 C -0.50 -13.03 8.40 -34.44 -0.29 -13.32 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.89 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.66 -13.35 5.47 -103.40 -0.57 -13.92 16 14 C 0.11 1.91 2.41 -70.02 -0.17 1.74 16 15 H 0.12 2.02 7.44 -51.93 -0.39 1.64 16 16 C 0.50 8.33 6.87 -10.98 -0.08 8.26 16 17 N -0.85 -10.41 8.87 31.22 0.28 -10.14 16 18 O -0.54 -10.74 16.72 5.56 0.09 -10.65 16 19 C -0.04 -0.56 4.94 -104.62 -0.52 -1.08 16 20 C -0.08 -1.21 9.32 -39.58 -0.37 -1.57 16 21 C -0.09 -1.21 9.79 -39.56 -0.39 -1.60 16 22 C -0.09 -1.18 6.22 -39.52 -0.25 -1.42 16 23 Br -0.07 -0.72 33.70 -68.01 -2.29 -3.01 16 24 C -0.09 -1.11 9.79 -39.55 -0.39 -1.50 16 25 C -0.11 -1.36 9.67 -39.59 -0.38 -1.74 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.79 6.62 -51.93 -0.34 0.45 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.33 6.74 4.73 -39.29 -0.19 6.56 16 33 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16 34 H 0.39 4.23 8.93 -40.82 -0.36 3.86 16 35 H 0.13 2.02 7.20 -52.49 -0.38 1.64 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.37 8.04 -52.48 -0.42 0.94 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -29.81 338.50 -9.42 -39.23 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.80 Total: 13.16 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.83 Total: -11.45 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.34 Total: -48.05 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.81 -9.42 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.037 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds