Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 H 1.09003 * 109.47375 * 303.27055 * 3 2 1 5 5 C 1.50697 * 109.47453 * 183.27078 * 3 2 1 6 6 H 1.08003 * 120.00096 * 239.99964 * 5 3 2 7 7 C 1.37878 * 120.00074 * 60.00135 * 5 3 2 8 8 N 1.31509 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47012 * 119.99598 * 9 7 5 12 12 H 1.48498 * 109.47198 * 239.99933 * 9 7 5 13 13 N 1.46905 * 109.47034 * 63.26733 * 3 2 1 14 14 C 1.46896 * 111.00213 * 206.18250 * 13 3 2 15 15 H 1.09007 * 109.47309 * 324.62895 * 14 13 3 16 16 C 1.50706 * 109.46933 * 84.62060 * 14 13 3 17 17 N 1.34780 * 120.00051 * 206.16185 * 16 14 13 18 18 O 1.21284 * 119.99753 * 26.16213 * 16 14 13 19 19 C 1.50698 * 109.47430 * 204.62088 * 14 13 3 20 20 C 1.38240 * 119.98976 * 140.00116 * 19 14 13 21 21 C 1.38219 * 120.01293 * 180.02562 * 20 19 14 22 22 C 1.38332 * 119.98548 * 0.02562 * 21 20 19 23 23 Br 1.89096 * 120.00914 * 180.02562 * 22 21 20 24 24 C 1.38321 * 119.97891 * 0.27491 * 22 21 20 25 25 C 1.38221 * 119.98951 * 359.42717 * 24 22 21 26 26 H 1.08999 * 109.47268 * 301.67384 * 1 2 3 27 27 H 1.09002 * 109.47293 * 61.67606 * 1 2 3 28 28 H 1.09004 * 109.46912 * 181.67830 * 1 2 3 29 29 H 1.09002 * 109.47144 * 240.00262 * 2 1 3 30 30 H 1.08999 * 109.47499 * 120.00266 * 2 1 3 31 31 H 0.97003 * 120.00178 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99489 * 82.23306 * 13 3 2 33 33 H 0.96999 * 119.99807 * 359.97438 * 17 16 14 34 34 H 0.96996 * 119.99677 * 180.02562 * 17 16 14 35 35 H 1.07997 * 119.99761 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.00577 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.00545 * 179.70208 * 24 22 21 38 38 H 1.08008 * 119.99584 * 180.31882 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9730 -0.8592 5 6 3.5448 1.4433 -0.0811 6 1 4.1278 1.8958 0.7075 7 6 4.1773 0.8664 -1.1619 8 7 3.4674 0.3151 -2.1218 9 14 6.0426 0.8668 -1.2620 10 1 6.6024 1.5440 -0.0649 11 1 6.5357 -0.5329 -1.3154 12 1 6.4724 1.5902 -2.4856 13 7 1.6158 2.1118 1.2370 14 6 1.5151 3.5642 1.0418 15 1 2.2964 3.8939 0.3569 16 6 0.1649 3.9008 0.4628 17 7 0.0079 5.0166 -0.2766 18 8 -0.7803 3.1674 0.6623 19 6 1.6814 4.2620 2.3671 20 6 2.4152 5.4310 2.4452 21 6 2.5685 6.0711 3.6606 22 6 1.9879 5.5415 4.7990 23 35 2.1967 6.4171 6.4620 24 6 1.2591 4.3685 4.7214 25 6 1.1011 3.7324 3.5044 26 1 -0.3634 0.5396 0.8746 27 1 -0.3634 0.4876 -0.9046 28 1 -0.3633 -1.0273 0.0301 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9123 -0.0911 -2.8821 32 1 2.2394 1.8918 1.9992 33 1 0.7638 5.6033 -0.4358 34 1 -0.8612 5.2334 -0.6489 35 1 2.8687 5.8442 1.5564 36 1 3.1414 6.9846 3.7214 37 1 0.8096 3.9520 5.6108 38 1 0.5277 2.8192 3.4429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = -17.205911 kcal Electronic energy + Delta-G solvation = -21822.710251 eV Core-core repulsion = 18517.784083 eV Total energy + Delta-G solvation = -3304.926168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93975 -38.44414 -35.99738 -33.63458 -33.04238 -31.91807 -31.09815 -30.95033 -29.16208 -26.71285 -25.06150 -22.93458 -22.50310 -21.85167 -19.76921 -19.43213 -17.30355 -16.88814 -16.39184 -16.20555 -15.33720 -15.16440 -14.73758 -14.26366 -13.79247 -13.59913 -13.46539 -13.17803 -13.05762 -12.83921 -12.40175 -11.93045 -11.36745 -11.33301 -11.19936 -11.03432 -10.94884 -10.79134 -10.70269 -10.38043 -10.26423 -9.66025 -9.52532 -9.50905 -9.27410 -9.08747 -9.01721 -8.50037 -8.44340 -7.41151 -6.06540 -4.20785 1.02924 1.31866 1.54355 3.13287 3.20876 3.30321 3.32553 3.57314 3.92363 4.33139 4.72892 4.87628 4.90780 5.15430 5.20541 5.37111 5.44080 5.53865 5.66705 5.89035 6.02785 6.15846 6.23061 6.49104 6.58510 6.65211 6.80609 6.84393 7.06474 7.13347 7.34363 7.38902 7.55677 7.68926 7.75726 7.97835 8.04907 8.22572 8.51460 8.75487 8.91421 9.47669 10.93596 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.003456 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.535302 B = 8099.156524 C = 9104.636630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.030 0.970 5 C -0.551 4.551 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.114 3.886 15 H 0.077 0.923 16 C 0.528 3.472 17 N -0.863 5.863 18 O -0.515 6.515 19 C -0.061 4.061 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.092 4.092 23 Br -0.063 7.063 24 C -0.094 4.094 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.020 0.980 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.339 0.661 33 H 0.396 0.604 34 H 0.396 0.604 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 14.126 12.141 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.048 0.952 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.292 5.292 14 C 0.000 4.000 15 H 0.095 0.905 16 C 0.311 3.689 17 N -0.428 5.428 18 O -0.387 6.387 19 C -0.062 4.062 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.171 4.171 23 Br 0.022 6.978 24 C -0.114 4.114 25 C -0.103 4.103 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.224 0.776 34 H 0.226 0.774 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.926 13.599 12.716 19.027 hybrid contribution 2.115 0.429 -0.913 2.344 sum -1.810 14.028 11.802 18.422 Atomic orbital electron populations 1.21686 0.98408 0.98013 1.01208 1.21453 0.92515 0.98600 1.01575 1.19207 0.92432 0.91553 0.85726 0.95193 1.21885 0.92402 1.38377 1.06339 0.92650 1.24921 0.98018 0.94829 0.95546 1.69899 1.34947 1.37337 1.09675 0.86610 0.86010 0.77890 0.77899 1.19871 1.20891 1.21049 1.60709 1.55883 1.02282 1.10328 1.20229 0.94293 0.92761 0.92746 0.90493 1.20604 0.90833 0.79947 0.77483 1.43895 1.15169 1.26936 1.56808 1.90681 1.41571 1.48334 1.58156 1.19944 0.96481 0.94750 0.95012 1.21091 0.98690 0.95064 0.97632 1.20998 0.99174 1.00069 0.91223 1.21759 1.05166 0.98637 0.91543 1.96672 1.97141 1.78379 1.25614 1.21137 0.97841 0.93670 0.98737 1.21251 0.98033 1.00214 0.90785 0.92205 0.94858 0.96098 0.89327 0.95064 0.92839 0.84259 0.77632 0.77420 0.84999 0.85177 0.85085 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.81 37.16 0.36 -2.63 16 2 C -0.10 -2.47 5.44 -26.73 -0.15 -2.62 16 3 C 0.22 5.18 1.80 -68.86 -0.12 5.06 16 4 H 0.03 0.80 7.61 -51.93 -0.40 0.41 16 5 C -0.55 -14.02 8.32 -34.44 -0.29 -14.31 16 6 H 0.06 1.39 7.72 -52.48 -0.41 0.99 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.54 16 9 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.66 -13.10 4.42 -103.39 -0.46 -13.56 16 14 C 0.11 1.93 2.42 -70.02 -0.17 1.76 16 15 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 16 C 0.53 9.09 6.92 -10.98 -0.08 9.01 16 17 N -0.86 -10.85 8.87 31.22 0.28 -10.57 16 18 O -0.51 -10.72 17.26 5.55 0.10 -10.63 16 19 C -0.06 -0.87 4.70 -104.62 -0.49 -1.36 16 20 C -0.11 -1.28 9.67 -39.59 -0.38 -1.67 16 21 C -0.09 -1.09 9.79 -39.55 -0.39 -1.47 16 22 C -0.09 -1.10 6.22 -39.52 -0.25 -1.35 16 23 Br -0.06 -0.67 33.70 -68.01 -2.29 -2.96 16 24 C -0.09 -1.17 9.79 -39.56 -0.39 -1.56 16 25 C -0.08 -1.18 9.01 -39.59 -0.36 -1.54 16 26 H 0.06 1.33 7.44 -51.93 -0.39 0.94 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.37 5.99 -51.93 -0.31 2.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.34 6.61 7.66 -39.29 -0.30 6.31 16 33 H 0.40 3.86 8.83 -40.82 -0.36 3.50 16 34 H 0.40 4.39 8.93 -40.82 -0.36 4.02 16 35 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 38 H 0.15 2.19 7.72 -52.48 -0.40 1.79 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -29.51 341.91 -9.39 -38.90 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -4.99 Total: 12.83 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.78 Total: -10.92 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.45 Total: -47.66 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.51 -9.39 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.699 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds