Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 H 1.09003 * 109.47375 * 303.27055 * 3 2 1 5 5 C 1.50697 * 109.47453 * 183.27078 * 3 2 1 6 6 H 1.08003 * 120.00096 * 239.99964 * 5 3 2 7 7 C 1.37878 * 120.00074 * 60.00135 * 5 3 2 8 8 N 1.31509 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47012 * 119.99598 * 9 7 5 12 12 H 1.48498 * 109.47198 * 239.99933 * 9 7 5 13 13 N 1.46905 * 109.47034 * 63.26733 * 3 2 1 14 14 C 1.46896 * 111.00213 * 206.18250 * 13 3 2 15 15 H 1.09007 * 109.47309 * 324.62895 * 14 13 3 16 16 C 1.50706 * 109.46933 * 84.62060 * 14 13 3 17 17 N 1.34780 * 120.00051 * 206.16185 * 16 14 13 18 18 O 1.21284 * 119.99753 * 26.16213 * 16 14 13 19 19 C 1.50698 * 109.47430 * 204.62088 * 14 13 3 20 20 C 1.38240 * 119.98976 * 140.00116 * 19 14 13 21 21 C 1.38219 * 120.01293 * 180.02562 * 20 19 14 22 22 C 1.38332 * 119.98548 * 0.02562 * 21 20 19 23 23 Br 1.89096 * 120.00914 * 180.02562 * 22 21 20 24 24 C 1.38321 * 119.97891 * 0.27491 * 22 21 20 25 25 C 1.38221 * 119.98951 * 359.42717 * 24 22 21 26 26 H 1.08999 * 109.47268 * 301.67384 * 1 2 3 27 27 H 1.09002 * 109.47293 * 61.67606 * 1 2 3 28 28 H 1.09004 * 109.46912 * 181.67830 * 1 2 3 29 29 H 1.09002 * 109.47144 * 240.00262 * 2 1 3 30 30 H 1.08999 * 109.47499 * 120.00266 * 2 1 3 31 31 H 0.97003 * 120.00178 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99489 * 82.23306 * 13 3 2 33 33 H 0.96999 * 119.99807 * 359.97438 * 17 16 14 34 34 H 0.96996 * 119.99677 * 180.02562 * 17 16 14 35 35 H 1.07997 * 119.99761 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.00577 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.00545 * 179.70208 * 24 22 21 38 38 H 1.08008 * 119.99584 * 180.31882 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9730 -0.8592 5 6 3.5448 1.4433 -0.0811 6 1 4.1278 1.8958 0.7075 7 6 4.1773 0.8664 -1.1619 8 7 3.4674 0.3151 -2.1218 9 14 6.0426 0.8668 -1.2620 10 1 6.6024 1.5440 -0.0649 11 1 6.5357 -0.5329 -1.3154 12 1 6.4724 1.5902 -2.4856 13 7 1.6158 2.1118 1.2370 14 6 1.5151 3.5642 1.0418 15 1 2.2964 3.8939 0.3569 16 6 0.1649 3.9008 0.4628 17 7 0.0079 5.0166 -0.2766 18 8 -0.7803 3.1674 0.6623 19 6 1.6814 4.2620 2.3671 20 6 2.4152 5.4310 2.4452 21 6 2.5685 6.0711 3.6606 22 6 1.9879 5.5415 4.7990 23 35 2.1967 6.4171 6.4620 24 6 1.2591 4.3685 4.7214 25 6 1.1011 3.7324 3.5044 26 1 -0.3634 0.5396 0.8746 27 1 -0.3634 0.4876 -0.9046 28 1 -0.3633 -1.0273 0.0301 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9123 -0.0911 -2.8821 32 1 2.2394 1.8918 1.9992 33 1 0.7638 5.6033 -0.4358 34 1 -0.8612 5.2334 -0.6489 35 1 2.8687 5.8442 1.5564 36 1 3.1414 6.9846 3.7214 37 1 0.8096 3.9520 5.6108 38 1 0.5277 2.8192 3.4429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = -36.605749 kcal Electronic energy + Delta-G solvation = -21823.551491 eV Core-core repulsion = 18517.784083 eV Total energy + Delta-G solvation = -3305.767408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14812 -39.63123 -37.70234 -35.07553 -34.37406 -33.54732 -32.44092 -32.00903 -30.43927 -28.36538 -26.59190 -24.57416 -23.72276 -22.96893 -21.38222 -20.93815 -18.85220 -18.21063 -17.81333 -17.49079 -16.78622 -16.36176 -16.22797 -15.45445 -15.36660 -15.06690 -14.74767 -14.56999 -14.39415 -14.09624 -13.95052 -13.41535 -13.15578 -13.08168 -12.84246 -12.58091 -12.26927 -12.16015 -12.09348 -11.83819 -11.52071 -11.38118 -11.25140 -11.10905 -10.82969 -10.50689 -10.46009 -9.98288 -9.55287 -9.08332 -8.04151 -6.26906 0.01836 0.35132 0.62369 1.39853 1.44102 1.53026 1.79599 2.41617 2.51660 2.75526 3.17216 3.60722 3.74551 3.91948 3.98629 4.22321 4.39207 4.42435 4.59474 4.60765 4.70545 4.79077 4.96701 5.03236 5.14263 5.18193 5.22134 5.44706 5.49832 5.56517 5.63744 5.78575 5.81427 6.02720 6.08557 6.14604 6.30552 6.56485 6.77395 6.98896 7.45209 7.51496 8.93249 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.003456 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.535302 B = 8099.156524 C = 9104.636630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.230 3.770 4 H -0.003 1.003 5 C -0.556 4.556 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.659 5.659 14 C 0.118 3.882 15 H 0.072 0.928 16 C 0.523 3.477 17 N -0.841 5.841 18 O -0.559 6.559 19 C -0.075 4.075 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.096 4.096 23 Br -0.047 7.047 24 C -0.095 4.095 25 C -0.095 4.095 26 H 0.057 0.943 27 H 0.018 0.982 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.340 0.660 33 H 0.412 0.588 34 H 0.406 0.594 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 15.925 13.251 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C 0.122 3.878 4 H 0.014 0.986 5 C -0.595 4.595 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.290 5.290 14 C 0.004 3.996 15 H 0.090 0.910 16 C 0.307 3.693 17 N -0.407 5.407 18 O -0.435 6.435 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.176 4.176 23 Br 0.038 6.962 24 C -0.115 4.115 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.243 0.757 34 H 0.238 0.762 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.825 15.456 13.824 20.928 hybrid contribution 1.758 -0.044 -1.200 2.129 sum -1.068 15.412 12.624 19.951 Atomic orbital electron populations 1.21502 0.96900 0.98969 1.00287 1.21345 0.93764 0.98676 1.00067 1.18884 0.91526 0.91254 0.86136 0.98554 1.22152 0.93338 1.37853 1.06203 0.92446 1.25645 1.02059 0.94652 0.95349 1.70034 1.36533 1.38199 1.10212 0.85627 0.81084 0.77589 0.78011 1.19090 1.21137 1.20746 1.60532 1.55476 1.04431 1.08541 1.20177 0.94006 0.91057 0.94388 0.91023 1.20722 0.90423 0.80542 0.77648 1.43656 1.16420 1.25637 1.54970 1.90657 1.42707 1.50098 1.60065 1.19775 0.98316 0.95937 0.93574 1.21294 0.97794 0.94080 0.98932 1.21289 0.98597 1.00563 0.90514 1.21963 1.04579 0.98425 0.92584 1.96695 1.97034 1.77883 1.24556 1.21243 0.97865 0.93864 0.98505 1.21149 0.98570 1.00144 0.91613 0.92369 0.96314 0.94187 0.92071 0.95109 0.92943 0.84113 0.75723 0.76236 0.82877 0.82697 0.83795 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 9.81 71.98 0.71 -4.63 16 2 C -0.10 -4.91 5.44 30.59 0.17 -4.74 16 3 C 0.23 11.19 1.80 44.17 0.08 11.27 16 4 H 0.00 -0.19 7.61 -2.39 -0.02 -0.21 16 5 C -0.56 -28.46 8.32 25.60 0.21 -28.25 16 6 H 0.06 2.86 7.72 -2.91 -0.02 2.84 16 7 C 0.02 1.23 5.30 84.66 0.45 1.67 16 8 N -0.91 -50.82 11.30 21.45 0.24 -50.58 16 9 Si 0.95 41.54 29.54 68.60 2.03 43.56 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.66 -26.57 4.42 -481.02 -2.12 -28.70 16 14 C 0.12 3.99 2.42 43.43 0.11 4.09 16 15 H 0.07 2.50 7.54 -2.38 -0.02 2.48 16 16 C 0.52 18.04 6.92 87.66 0.61 18.65 16 17 N -0.84 -20.34 8.87 -173.52 -1.54 -21.88 16 18 O -0.56 -23.73 17.26 -3.04 -0.05 -23.78 16 19 C -0.07 -2.08 4.70 -19.87 -0.09 -2.18 16 20 C -0.10 -2.24 9.67 22.27 0.22 -2.03 16 21 C -0.09 -1.80 9.79 22.29 0.22 -1.58 16 22 C -0.10 -2.08 6.22 22.31 0.14 -1.94 16 23 Br -0.05 -0.88 33.70 -20.37 -0.69 -1.57 16 24 C -0.10 -2.24 9.79 22.29 0.22 -2.02 16 25 C -0.10 -2.65 9.01 22.26 0.20 -2.45 16 26 H 0.06 2.61 7.44 -2.39 -0.02 2.60 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 3.36 5.99 -2.39 -0.01 3.35 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.34 13.43 7.66 -89.69 -0.69 12.75 16 33 H 0.41 7.34 8.83 -92.71 -0.82 6.52 16 34 H 0.41 8.55 8.93 -92.71 -0.83 7.72 16 35 H 0.15 2.65 8.04 -2.91 -0.02 2.63 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.13 3.99 7.72 -2.91 -0.02 3.97 16 Total: -1.00 -63.83 341.91 -0.14 -63.96 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.23 Total: 33.10 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.22 Total: -14.13 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.42 Total: -101.15 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.57 kcal Total: -63.83 -0.14 -63.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.359 kcal (2) G-P(sol) polarization free energy of solvation -63.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds