Wall clock time and date at job start Sat Apr 11 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38761 * 120.79081 * 2 1 4 4 Br 1.89097 * 120.43040 * 0.02562 * 3 2 1 5 5 C 1.38287 * 119.13856 * 180.29556 * 3 2 1 6 6 N 1.31870 * 120.75070 * 359.68674 * 5 3 2 7 7 C 1.31856 * 121.73984 * 0.02562 * 6 5 3 8 8 C 1.38238 * 120.78340 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.41289 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47011 * 260.00076 * 9 8 7 11 11 C 1.48720 * 111.01412 * 54.49113 * 10 9 8 12 12 C 1.54380 * 104.51798 * 158.96554 * 11 10 9 13 13 C 1.54264 * 105.15118 * 336.27099 * 12 11 10 14 14 O 1.42892 * 110.32452 * 241.05615 * 13 12 11 15 15 C 1.50694 * 110.32580 * 118.84023 * 13 12 11 16 16 H 1.07996 * 120.00120 * 0.38509 * 15 13 12 17 17 C 1.37883 * 119.99926 * 180.38413 * 15 13 12 18 18 N 1.31513 * 119.99677 * 186.83153 * 17 15 13 19 19 Si 1.86797 * 120.00012 * 6.82955 * 17 15 13 20 20 H 1.48493 * 109.47165 * 94.01979 * 19 17 15 21 21 H 1.48502 * 109.47125 * 214.02234 * 19 17 15 22 22 H 1.48498 * 109.47077 * 334.01765 * 19 17 15 23 23 C 1.48558 * 110.99828 * 169.99894 * 10 9 8 24 24 H 1.09004 * 109.47220 * 270.28211 * 1 2 3 25 25 H 1.09003 * 109.47906 * 30.28452 * 1 2 3 26 26 H 1.09004 * 109.47477 * 150.28854 * 1 2 3 27 27 H 1.07994 * 119.61897 * 179.70650 * 5 3 2 28 28 H 1.08000 * 119.61140 * 179.97438 * 7 6 5 29 29 H 1.08996 * 109.46711 * 140.00148 * 9 8 7 30 30 H 1.08994 * 109.46929 * 20.00119 * 9 8 7 31 31 H 1.09000 * 110.38979 * 40.24402 * 11 10 9 32 32 H 1.08996 * 110.51110 * 277.74990 * 11 10 9 33 33 H 1.08996 * 110.32647 * 217.32480 * 12 11 10 34 34 H 1.09004 * 110.32083 * 95.21288 * 12 11 10 35 35 H 0.96704 * 113.99889 * 298.53736 * 14 13 12 36 36 H 0.97004 * 119.99578 * 179.97438 * 18 17 15 37 37 H 1.09005 * 110.40831 * 82.18389 * 23 10 9 38 38 H 1.08992 * 110.41532 * 319.74151 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2173 1.1920 0.0000 4 35 1.3069 2.8494 0.0007 5 6 3.5996 1.1522 -0.0062 6 7 4.2409 -0.0001 -0.0059 7 6 3.5984 -1.1515 -0.0002 8 6 2.2166 -1.1907 0.0062 9 6 1.4908 -2.5114 0.0133 10 7 1.0380 -2.8285 -1.3477 11 6 2.1721 -2.7923 -2.3091 12 6 1.6912 -3.6390 -3.5070 13 6 0.6130 -4.5790 -2.9294 14 8 1.0035 -5.9435 -3.0955 15 6 -0.7136 -4.3277 -3.5986 16 1 -0.7955 -3.5765 -4.3701 17 6 -1.8228 -5.0570 -3.2259 18 7 -2.9464 -4.9348 -3.8985 19 14 -1.7297 -6.2185 -1.7660 20 1 -2.1946 -5.5153 -0.5435 21 1 -2.5945 -7.3994 -2.0169 22 1 -0.3259 -6.6643 -1.5769 23 6 0.5327 -4.2232 -1.4292 24 1 -0.3634 0.0051 1.0277 25 1 -0.3635 0.8874 -0.5182 26 1 -0.3634 -0.8926 -0.5094 27 1 4.1601 2.0752 -0.0111 28 1 4.1583 -2.0751 -0.0006 29 1 0.6290 -2.4487 0.6776 30 1 2.1637 -3.2938 0.3639 31 1 3.0623 -3.2358 -1.8632 32 1 2.3734 -1.7683 -2.6238 33 1 2.5181 -4.2185 -3.9174 34 1 1.2612 -2.9971 -4.2760 35 1 1.1137 -6.2115 -4.0181 36 1 -3.7267 -5.4482 -3.6365 37 1 -0.4989 -4.2747 -1.0810 38 1 1.1657 -4.8916 -0.8456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597154546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:22 Heat of formation + Delta-G solvation = -17.074451 kcal Electronic energy + Delta-G solvation = -22118.770155 eV Core-core repulsion = 18813.849688 eV Total energy + Delta-G solvation = -3304.920467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66032 -40.11198 -37.06545 -35.31623 -34.42981 -33.95334 -31.66321 -30.67763 -29.91773 -28.85976 -27.20996 -25.70936 -23.42571 -23.23933 -21.83528 -21.20058 -19.06859 -18.13640 -17.50940 -17.24449 -17.12898 -16.36351 -16.04485 -15.52213 -15.34925 -15.07695 -14.70744 -14.60088 -14.05074 -13.87247 -13.79527 -13.73576 -13.62699 -13.34834 -13.26547 -12.63161 -12.54290 -12.34512 -12.20186 -12.04268 -11.86906 -11.68310 -11.34389 -10.95800 -10.75761 -10.54918 -10.41135 -10.19173 -9.90977 -9.35631 -8.30822 -6.40848 -0.19865 0.05717 0.49559 1.35917 1.43668 1.67224 2.41815 2.49040 3.00200 3.13167 3.34939 3.54122 3.62302 3.71469 3.78295 3.95032 3.97041 4.20825 4.30349 4.35371 4.46071 4.53352 4.57253 4.62539 4.68224 4.70093 4.84922 4.90126 5.02355 5.15727 5.23693 5.28505 5.38522 5.48103 5.61766 5.86698 6.10197 6.16034 6.68904 6.76280 7.20452 7.39127 8.84110 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.003585 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.349167 B = 7809.005131 C = 8510.639760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.004 3.996 3 C -0.159 4.159 4 Br -0.026 7.026 5 C 0.130 3.870 6 N -0.495 5.495 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.085 3.915 10 N -0.504 5.504 11 C 0.050 3.950 12 C -0.136 4.136 13 C 0.214 3.786 14 O -0.582 6.582 15 C -0.532 4.532 16 H 0.033 0.967 17 C 0.032 3.968 18 N -0.941 5.941 19 Si 0.932 3.068 20 H -0.282 1.282 21 H -0.306 1.306 22 H -0.209 1.209 23 C 0.054 3.946 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.183 0.817 28 H 0.177 0.823 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.375 0.625 36 H 0.264 0.736 37 H 0.059 0.941 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.246 13.053 11.684 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.006 4.006 3 C -0.241 4.241 4 Br 0.059 6.941 5 C -0.029 4.029 6 N -0.204 5.204 7 C -0.036 4.036 8 C -0.133 4.133 9 C -0.043 4.043 10 N -0.229 5.229 11 C -0.078 4.078 12 C -0.174 4.174 13 C 0.174 3.826 14 O -0.390 6.390 15 C -0.569 4.569 16 H 0.051 0.949 17 C -0.167 4.167 18 N -0.581 5.581 19 Si 0.758 3.242 20 H -0.209 1.209 21 H -0.235 1.235 22 H -0.131 1.131 23 C -0.074 4.074 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.200 0.800 28 H 0.194 0.806 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.240 14.020 12.182 22.809 hybrid contribution -0.924 -1.301 -0.265 1.617 sum 12.316 12.719 11.917 21.342 Atomic orbital electron populations 1.21087 0.89034 1.04756 1.03916 1.20282 0.97815 0.91048 0.91423 1.23012 0.96509 0.92748 1.11811 1.96699 1.77242 1.22554 1.97606 1.23126 0.89518 0.97543 0.92732 1.67889 1.40259 0.98432 1.13779 1.23113 0.90953 0.96992 0.92492 1.20669 0.94843 0.94955 1.02790 1.21215 0.99204 0.92677 0.91202 1.65408 1.28861 1.23172 1.05477 1.22953 0.92423 0.99595 0.92790 1.22872 0.98237 0.98420 0.97874 1.19635 0.91433 0.79697 0.91821 1.86447 1.91100 1.29536 1.31877 1.21579 0.93870 1.20426 1.21052 0.94922 1.25763 0.94560 0.97609 0.98781 1.70091 1.03127 1.43264 1.41580 0.86130 0.80833 0.77910 0.79342 1.20937 1.23455 1.13080 1.23085 0.99049 0.88558 0.96685 0.88741 0.90296 0.90056 0.80039 0.80585 0.89034 0.91635 0.92213 0.91140 0.90105 0.92960 0.77630 0.92702 0.92256 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.93 71.23 0.64 -2.55 16 2 C 0.00 0.10 5.92 -19.65 -0.12 -0.01 16 3 C -0.16 -3.53 6.24 22.41 0.14 -3.39 16 4 Br -0.03 -0.50 31.98 -20.37 -0.65 -1.15 16 5 C 0.13 2.72 10.95 84.70 0.93 3.65 16 6 N -0.49 -11.40 10.36 -195.76 -2.03 -13.43 16 7 C 0.12 2.65 10.21 84.69 0.87 3.52 16 8 C -0.13 -3.08 4.40 -19.77 -0.09 -3.17 16 9 C 0.08 2.18 4.36 85.56 0.37 2.56 16 10 N -0.50 -16.90 4.90 -885.61 -4.34 -21.24 16 11 C 0.05 1.54 5.22 86.42 0.45 2.00 16 12 C -0.14 -4.96 6.43 31.49 0.20 -4.76 16 13 C 0.21 9.25 0.90 -10.64 -0.01 9.24 16 14 O -0.58 -23.95 10.16 -148.98 -1.51 -25.46 16 15 C -0.53 -29.02 8.82 25.60 0.23 -28.79 16 16 H 0.03 2.02 7.60 -2.91 -0.02 1.99 16 17 C 0.03 1.81 5.43 84.66 0.46 2.27 16 18 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 19 Si 0.93 44.12 24.05 68.60 1.65 45.77 16 20 H -0.28 -12.97 7.09 99.48 0.71 -12.27 16 21 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 22 H -0.21 -9.23 5.22 99.48 0.52 -8.71 16 23 C 0.05 2.12 4.16 86.45 0.36 2.48 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 1.87 6.80 -2.39 -0.02 1.86 16 26 H 0.08 2.37 6.53 -2.38 -0.02 2.36 16 27 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.18 3.07 8.04 -2.91 -0.02 3.05 16 29 H 0.09 2.29 7.40 -2.39 -0.02 2.28 16 30 H 0.07 1.46 7.75 -2.39 -0.02 1.44 16 31 H 0.06 1.57 7.86 -2.39 -0.02 1.55 16 32 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 33 H 0.08 2.56 7.98 -2.39 -0.02 2.54 16 34 H 0.05 2.11 7.42 -2.39 -0.02 2.09 16 35 H 0.38 13.50 9.08 -74.05 -0.67 12.83 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.06 2.61 4.85 -2.38 -0.01 2.59 16 38 H 0.05 1.75 7.76 -2.39 -0.02 1.73 16 Total: -1.00 -65.49 318.30 -1.93 -67.42 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.23 Total: 22.75 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.43 Total: -16.97 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -6.07 Total: -92.35 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.51 Total: -25.46 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.65 Total: 45.77 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.65 Total: -1.15 kcal Total: -65.49 -1.93 -67.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597154546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.346 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds