Wall clock time and date at job start Sat Apr 11 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38763 * 120.78886 * 2 1 4 4 Br 1.89096 * 120.43176 * 359.97438 * 3 2 1 5 5 C 1.38280 * 119.13575 * 180.24909 * 3 2 1 6 6 N 1.31875 * 120.75258 * 359.76939 * 5 3 2 7 7 C 1.31854 * 121.73849 * 359.97438 * 6 5 3 8 8 C 1.38229 * 120.78304 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.41605 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47407 * 260.00795 * 9 8 7 11 11 C 1.48559 * 111.00066 * 69.86567 * 10 9 8 12 12 C 1.54387 * 104.58955 * 159.04379 * 11 10 9 13 13 C 1.54259 * 105.06271 * 336.15098 * 12 11 10 14 14 O 1.42891 * 110.32753 * 118.99791 * 13 12 11 15 15 C 1.50701 * 110.32157 * 241.10373 * 13 12 11 16 16 H 1.08005 * 119.99834 * 118.53799 * 15 13 12 17 17 C 1.37878 * 120.00375 * 298.54694 * 15 13 12 18 18 N 1.31512 * 119.99477 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00285 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46909 * 90.00158 * 19 17 15 21 21 H 1.48505 * 109.47218 * 209.99855 * 19 17 15 22 22 H 1.48495 * 109.47005 * 329.99872 * 19 17 15 23 23 C 1.48560 * 111.00239 * 185.29090 * 10 9 8 24 24 H 1.09001 * 109.47434 * 270.24825 * 1 2 3 25 25 H 1.09003 * 109.47068 * 30.24747 * 1 2 3 26 26 H 1.08999 * 109.46550 * 150.24681 * 1 2 3 27 27 H 1.08005 * 119.62186 * 179.74386 * 5 3 2 28 28 H 1.07993 * 119.60949 * 179.97438 * 7 6 5 29 29 H 1.08996 * 109.47595 * 139.99876 * 9 8 7 30 30 H 1.09004 * 109.46561 * 20.00015 * 9 8 7 31 31 H 1.08999 * 110.40971 * 40.26912 * 11 10 9 32 32 H 1.08999 * 110.41180 * 277.82119 * 11 10 9 33 33 H 1.09000 * 110.32138 * 95.04641 * 12 11 10 34 34 H 1.09003 * 110.32046 * 217.14933 * 12 11 10 35 35 H 0.96701 * 113.99998 * 61.45138 * 14 13 12 36 36 H 0.97001 * 119.99820 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.40940 * 82.17346 * 23 10 9 38 38 H 1.08996 * 110.50752 * 319.78735 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2173 1.1921 0.0000 4 35 1.3070 2.8494 -0.0007 5 6 3.5996 1.1522 -0.0053 6 7 4.2409 -0.0001 -0.0056 7 6 3.5984 -1.1515 -0.0006 8 6 2.2167 -1.1906 0.0059 9 6 1.4909 -2.5113 0.0122 10 7 1.0381 -2.8278 -1.3490 11 6 2.1886 -3.1533 -2.2306 12 6 1.5713 -3.9586 -3.3942 13 6 0.2688 -4.5551 -2.8222 14 8 -0.8602 -4.0781 -3.5569 15 6 0.3205 -6.0607 -2.8631 16 1 0.2648 -6.6281 -1.9458 17 6 0.4392 -6.7139 -4.0715 18 7 0.5077 -6.0230 -5.1885 19 14 0.5041 -8.5801 -4.1221 20 1 -0.8736 -9.1200 -4.2480 21 1 1.3148 -9.0158 -5.2876 22 1 1.1225 -9.0880 -2.8713 23 6 0.2087 -4.0602 -1.3612 24 1 -0.3634 0.0045 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3632 -0.8922 -0.5100 27 1 4.1602 2.0753 -0.0095 28 1 4.1583 -2.0750 -0.0015 29 1 0.6290 -2.4491 0.6766 30 1 2.1639 -3.2940 0.3623 31 1 2.9189 -3.7592 -1.6943 32 1 2.6518 -2.2400 -2.6040 33 1 1.3493 -3.3004 -4.2342 34 1 2.2489 -4.7536 -3.7057 35 1 -0.8522 -4.3221 -4.4925 36 1 0.5908 -6.4825 -6.0387 37 1 -0.8189 -3.8297 -1.0799 38 1 0.6272 -4.8088 -0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597154547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:28 Heat of formation + Delta-G solvation = -9.719742 kcal Electronic energy + Delta-G solvation = -21830.282245 eV Core-core repulsion = 18525.680702 eV Total energy + Delta-G solvation = -3304.601543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56475 -38.33340 -35.31587 -34.18036 -32.73152 -32.14787 -30.26879 -29.31343 -28.09174 -27.70222 -25.78175 -24.08996 -22.39075 -21.73614 -20.19947 -19.45477 -17.07599 -17.03375 -16.52129 -15.52741 -15.27793 -14.95063 -14.63158 -14.10100 -13.91974 -13.50399 -13.38147 -12.92824 -12.83429 -12.63130 -12.43340 -12.28614 -11.75666 -11.35305 -11.34516 -11.28607 -11.12219 -10.97670 -10.59594 -10.56218 -10.44841 -10.40672 -9.90177 -9.56383 -9.35118 -9.16278 -8.95599 -8.61578 -8.15107 -7.91949 -6.23841 -4.33036 0.78877 1.08173 1.41296 3.19823 3.27407 3.29562 3.52356 4.25597 4.29837 4.53456 4.58786 4.66535 4.77526 5.03870 5.05912 5.30325 5.44691 5.54848 5.60505 5.62913 5.72162 5.83727 5.91646 5.98662 6.12521 6.14791 6.27824 6.38022 6.46631 6.55823 6.87647 6.99163 7.27978 7.43616 7.50838 7.55668 7.75163 7.77165 8.16161 8.69939 9.36127 9.52937 10.82716 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.002871 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.115816 B = 9749.883265 C =10153.959308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.012 3.988 3 C -0.153 4.153 4 Br -0.040 7.040 5 C 0.126 3.874 6 N -0.482 5.482 7 C 0.119 3.881 8 C -0.114 4.114 9 C 0.083 3.917 10 N -0.503 5.503 11 C 0.033 3.967 12 C -0.119 4.119 13 C 0.254 3.746 14 O -0.586 6.586 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.051 3.949 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.379 0.621 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 15.251 11.071 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.002 3.998 3 C -0.234 4.234 4 Br 0.044 6.956 5 C -0.033 4.033 6 N -0.190 5.190 7 C -0.037 4.037 8 C -0.118 4.118 9 C -0.046 4.046 10 N -0.227 5.227 11 C -0.094 4.094 12 C -0.158 4.158 13 C 0.214 3.786 14 O -0.394 6.394 15 C -0.578 4.578 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.076 4.076 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.517 16.548 11.276 20.332 hybrid contribution 0.151 -2.290 -0.391 2.328 sum 3.668 14.259 10.885 18.310 Atomic orbital electron populations 1.21103 0.89110 1.05606 1.03036 1.20117 0.97590 0.90493 0.91593 1.22902 0.96177 0.92318 1.12026 1.96669 1.77407 1.23792 1.97684 1.22727 0.89464 0.96952 0.94153 1.67822 1.40016 0.98045 1.13147 1.22846 0.91319 0.96291 0.93290 1.20774 0.94497 0.95611 1.00882 1.21131 0.98455 0.91694 0.93346 1.65471 1.16429 1.34737 1.06097 1.23162 0.92342 0.98291 0.95649 1.22845 0.99801 0.97782 0.95329 1.19186 0.82681 0.90974 0.85739 1.86123 1.46991 1.79705 1.26610 1.21707 1.51212 0.91581 0.93265 0.92224 1.24994 0.93828 0.98839 0.95524 1.69706 1.49878 1.35763 0.97911 0.86499 0.78198 0.85052 0.77687 1.20439 1.21088 1.19868 1.23094 0.97064 0.88671 0.98816 0.90387 0.90424 0.88173 0.82260 0.82390 0.89714 0.93445 0.94708 0.92121 0.92755 0.91035 0.77083 0.92291 0.90796 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.93 36.01 0.32 -1.26 16 2 C 0.01 0.16 5.92 -104.29 -0.62 -0.46 16 3 C -0.15 -1.88 6.24 -39.37 -0.25 -2.13 16 4 Br -0.04 -0.42 31.98 -68.01 -2.18 -2.60 16 5 C 0.13 1.54 10.95 -17.52 -0.19 1.35 16 6 N -0.48 -6.54 10.36 -13.23 -0.14 -6.68 16 7 C 0.12 1.57 10.64 -17.55 -0.19 1.39 16 8 C -0.11 -1.54 4.95 -104.49 -0.52 -2.06 16 9 C 0.08 1.16 4.11 -4.97 -0.02 1.14 16 10 N -0.50 -8.93 4.78 -231.41 -1.11 -10.04 16 11 C 0.03 0.62 5.82 -2.18 -0.01 0.61 16 12 C -0.12 -2.69 5.55 -25.35 -0.14 -2.83 16 13 C 0.25 6.11 1.05 -90.39 -0.10 6.01 16 14 O -0.59 -15.08 12.94 -35.23 -0.46 -15.53 16 15 C -0.54 -14.00 8.08 -34.44 -0.28 -14.28 16 16 H 0.06 1.54 7.58 -52.48 -0.40 1.14 16 17 C 0.07 1.82 5.02 -17.82 -0.09 1.74 16 18 N -0.89 -23.45 10.81 55.43 0.60 -22.85 16 19 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.05 1.03 5.76 -2.18 -0.01 1.01 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.90 6.79 -51.93 -0.35 0.55 16 26 H 0.10 1.38 6.53 -51.93 -0.34 1.04 16 27 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.16 1.83 8.04 -52.49 -0.42 1.41 16 29 H 0.08 1.09 7.39 -51.93 -0.38 0.71 16 30 H 0.05 0.63 7.76 -51.93 -0.40 0.23 16 31 H 0.03 0.61 7.82 -51.93 -0.41 0.21 16 32 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 33 H 0.05 1.29 7.98 -51.93 -0.41 0.87 16 34 H 0.07 1.74 7.24 -51.93 -0.38 1.37 16 35 H 0.38 9.95 7.32 45.56 0.33 10.28 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 38 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -27.10 327.47 -9.82 -36.93 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.38 Total: 10.41 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.09 Total: -9.76 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.64 Total: -39.57 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.46 Total: -15.53 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.18 Total: -2.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.10 -9.82 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597154547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.208 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds